Wall clock time and date at job start Tue Mar 31 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.90184 * 2 1 4 4 N 1.40083 * 108.20750 * 180.25615 * 3 2 1 5 5 C 1.46503 * 126.04305 * 179.73422 * 4 3 2 6 6 C 1.50700 * 109.47249 * 269.98215 * 5 4 3 7 7 H 1.07997 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99661 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00154 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00510 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47245 * 90.00257 * 10 8 6 12 12 H 1.48496 * 109.47281 * 210.00535 * 10 8 6 13 13 H 1.48503 * 109.46993 * 330.00502 * 10 8 6 14 14 C 1.34954 * 107.92597 * 359.71974 * 4 3 2 15 15 C 1.50694 * 126.13110 * 179.97438 * 14 4 3 16 16 C 1.35320 * 107.73919 * 359.97438 * 14 4 3 17 17 C 1.50705 * 126.03629 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.46818 * 89.99864 * 17 16 14 19 19 C 1.50708 * 109.47136 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99682 * 0.02562 * 19 18 17 21 21 N 1.34769 * 119.99938 * 179.97438 * 19 18 17 22 22 C 1.46926 * 120.63293 * 354.21712 * 21 19 18 23 23 C 1.53196 * 108.77496 * 126.41050 * 22 21 19 24 24 C 1.53039 * 109.31144 * 54.63632 * 23 22 21 25 25 C 1.53040 * 109.52693 * 298.63995 * 24 23 22 26 26 C 1.46932 * 120.62682 * 174.23686 * 21 19 18 27 27 H 1.08996 * 109.58731 * 113.80593 * 26 21 19 28 28 C 1.52997 * 109.58749 * 353.37419 * 26 21 19 29 29 H 1.08994 * 109.47436 * 270.21625 * 1 2 3 30 30 H 1.09005 * 109.46931 * 30.21584 * 1 2 3 31 31 H 1.08996 * 109.47129 * 150.21248 * 1 2 3 32 32 H 1.09006 * 109.46632 * 29.97938 * 5 4 3 33 33 H 1.08998 * 109.47240 * 149.97326 * 5 4 3 34 34 H 0.96997 * 120.00701 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.47089 * 270.02410 * 15 14 4 36 36 H 1.09006 * 109.47021 * 30.02021 * 15 14 4 37 37 H 1.08993 * 109.47112 * 150.01988 * 15 14 4 38 38 H 1.09004 * 109.47156 * 330.00502 * 17 16 14 39 39 H 1.08998 * 109.47289 * 209.99855 * 17 16 14 40 40 H 1.09004 * 109.47476 * 60.00318 * 18 17 16 41 41 H 1.08997 * 109.47693 * 300.00183 * 18 17 16 42 42 H 1.09000 * 109.58608 * 6.62270 * 22 21 19 43 43 H 1.09003 * 109.70422 * 246.26442 * 22 21 19 44 44 H 1.08995 * 109.49707 * 294.68235 * 23 22 21 45 45 H 1.09003 * 109.51970 * 174.59920 * 23 22 21 46 46 H 1.09003 * 109.46675 * 58.65495 * 24 23 22 47 47 H 1.09004 * 109.46090 * 178.62928 * 24 23 22 48 48 H 1.09001 * 109.49724 * 181.31680 * 25 24 23 49 49 H 1.09000 * 109.49809 * 301.40610 * 25 24 23 50 50 H 1.08999 * 109.46697 * 65.79740 * 28 26 21 51 51 H 1.08997 * 109.46864 * 185.79910 * 28 26 21 52 52 H 1.09004 * 109.47231 * 305.80063 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0597 0.0000 4 7 3.6088 0.6340 -0.0059 5 6 4.7900 1.5005 -0.0135 6 6 5.1882 1.7948 -1.4368 7 1 4.6186 1.3777 -2.2541 8 6 6.2802 2.5956 -1.6956 9 7 6.6281 2.8520 -2.9377 10 14 7.2658 3.3165 -0.2820 11 1 8.3548 2.3784 0.0913 12 1 7.8526 4.6152 -0.6993 13 1 6.3736 3.5290 0.8859 14 6 3.6142 -0.7155 -0.0032 15 6 4.8349 -1.5991 -0.0082 16 6 2.3271 -1.1330 0.0048 17 6 1.8598 -2.5658 0.0108 18 6 1.7095 -3.0470 1.4554 19 6 1.2416 -4.4796 1.4616 20 8 1.0479 -5.0588 0.4137 21 7 1.0394 -5.1174 2.6314 22 6 1.3902 -4.4744 3.9051 23 6 0.1641 -4.4977 4.8233 24 6 -0.3364 -5.9372 4.9629 25 6 -0.7510 -6.4700 3.5894 26 6 0.4644 -6.4693 2.6573 27 1 1.2080 -7.1757 3.0261 28 6 0.0288 -6.8686 1.2461 29 1 -0.3634 0.0039 1.0276 30 1 -0.3633 0.8881 -0.5172 31 1 -0.3633 -0.8919 -0.5105 32 1 4.5589 2.4341 0.4996 33 1 5.6118 0.9990 0.4976 34 1 7.3961 3.4157 -3.1199 35 1 5.1238 -1.8139 -1.0370 36 1 5.6539 -1.0903 0.5004 37 1 4.6102 -2.5322 0.5084 38 1 2.5905 -3.1885 -0.5054 39 1 0.8982 -2.6365 -0.4976 40 1 0.9788 -2.4244 1.9717 41 1 2.6710 -2.9763 1.9639 42 1 1.6907 -3.4426 3.7229 43 1 2.2102 -5.0160 4.3767 44 1 -0.6236 -3.8786 4.3941 45 1 0.4369 -4.1106 5.8051 46 1 0.4599 -6.5609 5.3690 47 1 -1.1941 -5.9599 5.6352 48 1 -1.1293 -7.4870 3.6928 49 1 -1.5302 -5.8324 3.1719 50 1 0.9066 -6.9552 0.6058 51 1 -0.4898 -7.8265 1.2833 52 1 -0.6408 -6.1083 0.8437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043508651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:55 Heat of formation + Delta-G solvation = 24.509405 kcal Electronic energy + Delta-G solvation = -29363.241538 eV Core-core repulsion = 25556.828279 eV Total energy + Delta-G solvation = -3806.413259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.84131 -40.47806 -37.64149 -34.60257 -33.76256 -33.05612 -32.68995 -32.49336 -30.35252 -29.27084 -27.85264 -26.77462 -26.09723 -24.91427 -23.93004 -22.31437 -21.77617 -20.99485 -19.01335 -18.86525 -18.67436 -17.13252 -16.95505 -16.35428 -15.72674 -15.54852 -14.83171 -14.73808 -14.54771 -14.39708 -14.13776 -13.91355 -13.73458 -13.32737 -13.09542 -12.90100 -12.76097 -12.69440 -12.53953 -12.40857 -12.28273 -12.12803 -11.98677 -11.91382 -11.86543 -11.50765 -11.37719 -11.32326 -11.30490 -11.06543 -10.98731 -10.91309 -10.77293 -10.66672 -10.21618 -9.70229 -9.66631 -9.11764 -8.79600 -8.75682 -8.23906 -7.51044 -6.27229 -4.30401 2.59880 2.66409 2.80407 3.12278 3.20426 3.21336 3.33697 3.48995 4.20137 4.30891 4.40396 4.46481 4.61651 4.73926 4.91738 4.98739 5.00273 5.10614 5.17817 5.22871 5.27824 5.29921 5.33150 5.36153 5.46660 5.53560 5.58213 5.59154 5.64299 5.68218 5.74900 5.80431 5.86940 5.90796 5.94290 5.94897 6.01522 6.05665 6.19387 6.21986 6.28889 6.36054 6.45562 6.50480 6.52862 6.80650 6.93420 7.27987 7.28087 7.42685 7.85437 8.16613 8.30492 8.59312 8.78316 9.27862 10.85339 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.002449 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.162926 B =11431.041957 C =11562.395171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.054 3.946 3 N -0.294 5.294 4 N -0.325 5.325 5 C 0.230 3.770 6 C -0.540 4.540 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.886 5.886 10 Si 0.873 3.127 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.096 3.904 15 C -0.087 4.087 16 C -0.265 4.265 17 C -0.011 4.011 18 C -0.134 4.134 19 C 0.516 3.484 20 O -0.531 6.531 21 N -0.615 5.615 22 C 0.106 3.894 23 C -0.137 4.137 24 C -0.120 4.120 25 C -0.132 4.132 26 C 0.143 3.857 27 H 0.067 0.933 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.040 0.960 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.190 -18.636 17.283 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.118 5.118 4 N -0.104 5.104 5 C 0.111 3.889 6 C -0.578 4.578 7 H 0.098 0.902 8 C -0.126 4.126 9 N -0.523 5.523 10 Si 0.698 3.302 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.035 4.035 15 C -0.145 4.145 16 C -0.277 4.277 17 C -0.050 4.050 18 C -0.174 4.174 19 C 0.305 3.695 20 O -0.408 6.408 21 N -0.351 5.351 22 C -0.017 4.017 23 C -0.175 4.175 24 C -0.158 4.158 25 C -0.170 4.170 26 C 0.040 3.960 27 H 0.085 0.915 28 C -0.196 4.196 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.059 0.941 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.969 -17.426 16.587 26.871 hybrid contribution 0.722 -0.207 0.747 1.059 sum -11.248 -17.633 17.334 27.164 Atomic orbital electron populations 1.20034 0.87901 1.02589 1.01812 1.21964 0.96176 0.90711 1.02184 1.77274 0.87140 1.22626 1.24726 1.48779 1.05450 1.04010 1.52177 1.19959 0.79448 0.89788 0.99689 1.21159 1.13923 1.32428 0.90313 0.90160 1.24813 0.96639 0.95331 0.95768 1.69872 1.26917 1.37065 1.18448 0.86904 0.80867 0.79562 0.82819 1.19652 1.20459 1.18832 1.20768 0.96259 0.85381 1.01070 1.20365 0.93521 0.97144 1.03485 1.19367 0.91249 0.95228 1.21814 1.19407 1.01675 0.90697 0.93196 1.21808 1.02715 0.91783 1.01103 1.20981 0.76642 0.88954 0.82888 1.90734 1.50972 1.67186 1.31868 1.48234 1.63718 1.16843 1.06268 1.21754 0.96983 0.99002 0.84003 1.21928 0.98252 0.97446 0.99855 1.21519 1.01107 0.96175 0.96974 1.22017 0.97931 1.01741 0.95332 1.21235 0.94326 0.83094 0.97324 0.91492 1.22202 1.03104 0.99750 0.94498 0.91597 0.91466 0.91129 0.93310 0.93992 0.92112 0.90096 0.91214 0.90948 0.91321 0.91203 0.89185 0.89349 0.89194 0.91386 0.91309 0.90670 0.91829 0.91706 0.90946 0.91450 0.90120 0.94081 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.05 1.02 7.22 -82.41 -0.59 0.42 16 3 N -0.29 -6.64 12.58 33.67 0.42 -6.22 16 4 N -0.32 -7.39 3.60 -58.31 -0.21 -7.60 16 5 C 0.23 5.53 5.07 -5.19 -0.03 5.51 16 6 C -0.54 -15.20 9.94 -34.44 -0.34 -15.54 16 7 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 8 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 9 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 10 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 14 C 0.10 1.86 6.93 -82.26 -0.57 1.29 16 15 C -0.09 -1.38 9.72 36.00 0.35 -1.03 16 16 C -0.26 -4.64 5.35 -105.05 -0.56 -5.20 16 17 C -0.01 -0.15 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.51 4.04 -27.88 -0.11 -1.62 16 19 C 0.52 6.06 7.50 -10.98 -0.08 5.98 16 20 O -0.53 -7.74 11.55 5.55 0.06 -7.68 16 21 N -0.62 -5.74 2.97 -165.23 -0.49 -6.23 16 22 C 0.11 0.73 6.35 -3.71 -0.02 0.70 16 23 C -0.14 -0.79 6.08 -26.61 -0.16 -0.96 16 24 C -0.12 -0.67 5.88 -26.69 -0.16 -0.83 16 25 C -0.13 -0.89 5.37 -26.63 -0.14 -1.03 16 26 C 0.14 1.23 3.49 -67.61 -0.24 0.99 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -1.41 7.61 37.16 0.28 -1.13 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.88 7.25 -51.93 -0.38 0.50 16 32 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 33 H 0.04 0.93 6.48 -51.93 -0.34 0.59 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 37 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 38 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 39 H 0.07 1.01 7.20 -51.93 -0.37 0.63 16 40 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 41 H 0.09 0.92 7.70 -51.93 -0.40 0.52 16 42 H 0.09 0.59 5.93 -51.93 -0.31 0.28 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.99 6.54 -51.93 -0.34 0.65 16 51 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.06 0.78 6.96 -51.93 -0.36 0.42 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -33.05 403.41 -9.38 -42.43 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -9.12 Total: 0.57 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.23 Total: -11.16 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.50 Total: -45.73 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.06 Total: -7.68 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.05 -9.38 -42.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043508651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.935 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds