Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30833 * 125.90026 * 2 1 4 4 N 1.40086 * 108.20657 * 180.25292 * 3 2 1 5 5 C 1.46499 * 126.03919 * 179.73785 * 4 3 2 6 6 C 1.50700 * 109.47092 * 269.97991 * 5 4 3 7 7 H 1.07994 * 120.00171 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99676 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00031 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99668 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47587 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47336 * 120.00388 * 10 8 6 13 13 H 1.48505 * 109.47435 * 240.00572 * 10 8 6 14 14 C 1.34943 * 107.92160 * 359.72241 * 4 3 2 15 15 C 1.50709 * 126.12353 * 179.97438 * 14 4 3 16 16 C 1.35316 * 107.75048 * 359.97438 * 14 4 3 17 17 C 1.50696 * 126.04301 * 180.02562 * 16 14 4 18 18 C 1.53001 * 109.47152 * 89.99855 * 17 16 14 19 19 C 1.50699 * 109.47009 * 180.02562 * 18 17 16 20 20 O 1.21285 * 120.00302 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00115 * 180.02562 * 19 18 17 22 22 C 1.47263 * 121.35923 * 179.97438 * 21 19 18 23 23 C 1.52987 * 108.19058 * 118.51557 * 22 21 19 24 24 N 1.45649 * 110.76952 * 46.72612 * 23 22 21 25 25 C 1.33560 * 124.65011 * 338.20271 * 24 23 22 26 26 O 1.21285 * 118.62618 * 184.22357 * 25 24 23 27 27 C 1.47055 * 121.35024 * 359.97438 * 21 19 18 28 28 H 1.08998 * 109.47306 * 270.21402 * 1 2 3 29 29 H 1.08998 * 109.46406 * 30.21612 * 1 2 3 30 30 H 1.09002 * 109.46857 * 150.20958 * 1 2 3 31 31 H 1.09000 * 109.46982 * 29.97832 * 5 4 3 32 32 H 1.08998 * 109.46918 * 149.98003 * 5 4 3 33 33 H 0.97000 * 119.99585 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.46930 * 270.01785 * 15 14 4 35 35 H 1.08991 * 109.46998 * 30.02433 * 15 14 4 36 36 H 1.08998 * 109.46608 * 150.02311 * 15 14 4 37 37 H 1.09005 * 109.47162 * 330.00378 * 17 16 14 38 38 H 1.09000 * 109.47655 * 210.00076 * 17 16 14 39 39 H 1.08997 * 109.47168 * 59.99921 * 18 17 16 40 40 H 1.09000 * 109.47145 * 299.99833 * 18 17 16 41 41 H 1.08996 * 109.72496 * 238.19186 * 22 21 19 42 42 H 1.09004 * 109.71787 * 358.80463 * 22 21 19 43 43 H 1.09001 * 109.22129 * 167.06266 * 23 22 21 44 44 H 1.09006 * 109.21883 * 286.39913 * 23 22 21 45 45 H 0.97001 * 117.70479 * 158.07427 * 24 23 22 46 46 H 1.09002 * 109.56819 * 342.53945 * 27 21 19 47 47 H 1.09004 * 109.56988 * 102.77575 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 6 4.7900 1.5007 -0.0133 6 6 5.1882 1.7949 -1.4366 7 1 4.6183 1.3784 -2.2539 8 6 6.2797 2.5967 -1.6953 9 7 6.9734 3.1043 -0.7000 10 14 6.7737 2.9609 -3.4596 11 1 5.8384 2.2753 -4.3872 12 1 6.7200 4.4258 -3.6965 13 1 8.1554 2.4713 -3.6979 14 6 3.6142 -0.7154 -0.0032 15 6 4.8351 -1.5990 -0.0081 16 6 2.3272 -1.1330 0.0048 17 6 1.8599 -2.5657 0.0108 18 6 1.7095 -3.0471 1.4553 19 6 1.2429 -4.4800 1.4613 20 8 1.0491 -5.0591 0.4134 21 7 1.0398 -5.1177 2.6311 22 6 0.5835 -6.5173 2.6719 23 6 1.6583 -7.3497 3.3736 24 7 2.1018 -6.6952 4.5968 25 6 1.9737 -5.3899 4.8490 26 8 2.4515 -4.9460 5.8716 27 6 1.2648 -4.4441 3.9188 28 1 -0.3634 0.0038 1.0276 29 1 -0.3632 0.8881 -0.5172 30 1 -0.3633 -0.8919 -0.5106 31 1 4.5589 2.4342 0.4997 32 1 5.6118 0.9991 0.4977 33 1 7.7415 3.6681 -0.8821 34 1 5.1239 -1.8138 -1.0369 35 1 5.6538 -1.0902 0.5006 36 1 4.6103 -2.5321 0.5085 37 1 2.5907 -3.1884 -0.5054 38 1 0.8984 -2.6365 -0.4977 39 1 0.9789 -2.4244 1.9715 40 1 2.6711 -2.9764 1.9638 41 1 -0.3527 -6.5830 3.2261 42 1 0.4365 -6.8859 1.6566 43 1 1.2496 -8.3300 3.6190 44 1 2.5096 -7.4742 2.7043 45 1 2.5183 -7.2464 5.2777 46 1 1.8779 -3.5562 3.7642 47 1 0.3072 -4.1556 4.3522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044337938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -7.779490 kcal Electronic energy + Delta-G solvation = -28711.132880 eV Core-core repulsion = 24702.060464 eV Total energy + Delta-G solvation = -4009.072416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07397 -40.57674 -39.41272 -36.81874 -34.70773 -34.41701 -33.41573 -32.49611 -30.89862 -30.04270 -28.97963 -27.89757 -26.69785 -25.88637 -24.68018 -23.32822 -22.15317 -20.77389 -19.34000 -18.84315 -18.67133 -17.88237 -17.41959 -16.74166 -16.64999 -16.34498 -15.74549 -15.58713 -15.35150 -14.63616 -14.43289 -14.31441 -14.10462 -13.92221 -13.27696 -13.20928 -12.95463 -12.88794 -12.62337 -12.56312 -12.48383 -12.30965 -12.24768 -11.96284 -11.80317 -11.65139 -11.35528 -11.28932 -10.96207 -10.83503 -10.82600 -10.74507 -10.27056 -10.01072 -9.71978 -9.65138 -9.62038 -9.14211 -8.65849 -8.19483 -7.49655 -6.27151 -4.34387 2.08853 2.31901 2.36365 2.75418 2.82412 3.19442 3.27457 3.32851 3.35510 3.60207 3.94654 4.13246 4.29065 4.32682 4.56541 4.66661 4.79793 4.89959 5.06409 5.11834 5.15107 5.19992 5.27331 5.31257 5.37303 5.62580 5.64644 5.78761 5.81731 5.92709 5.93146 6.00577 6.04087 6.21899 6.24239 6.34990 6.40031 6.52635 6.74999 6.83406 6.85372 7.02518 7.10821 7.50067 7.65881 7.66325 7.85584 7.87693 8.04479 8.65932 8.74955 9.32160 10.80545 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002466 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.753890 B =11353.422565 C =11806.982332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.324 5.324 5 C 0.256 3.744 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.095 3.905 15 C -0.086 4.086 16 C -0.271 4.271 17 C -0.010 4.010 18 C -0.136 4.136 19 C 0.524 3.476 20 O -0.529 6.529 21 N -0.626 5.626 22 C 0.094 3.906 23 C 0.096 3.904 24 N -0.719 5.719 25 C 0.513 3.487 26 O -0.543 6.543 27 C 0.096 3.904 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.267 0.733 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.401 0.599 46 H 0.125 0.875 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.540 -21.396 9.066 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.121 5.121 4 N -0.103 5.103 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.037 4.037 15 C -0.144 4.144 16 C -0.283 4.283 17 C -0.049 4.049 18 C -0.176 4.176 19 C 0.314 3.686 20 O -0.405 6.405 21 N -0.364 5.364 22 C -0.029 4.029 23 C -0.029 4.029 24 N -0.371 5.371 25 C 0.299 3.701 26 O -0.420 6.420 27 C -0.030 4.030 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.236 0.764 46 H 0.143 0.857 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.160 -19.775 8.867 24.850 hybrid contribution 0.616 -0.768 -0.568 1.137 sum -11.544 -20.543 8.299 24.983 Atomic orbital electron populations 1.20028 0.88042 1.02433 1.01813 1.21943 0.96112 0.90752 1.02533 1.77279 0.87494 1.22674 1.24605 1.49250 1.05795 1.04203 1.51102 1.19666 0.77967 0.89561 0.98948 1.21340 1.12996 1.31653 0.91325 0.91749 1.24932 0.95714 0.95016 0.98160 1.69928 1.18929 1.33002 1.31107 0.86305 0.78385 0.78304 0.83731 1.19560 1.20622 1.20640 1.20779 0.96108 0.85706 1.01096 1.20351 0.93810 0.97106 1.03179 1.19314 0.91355 0.94997 1.22645 1.19391 1.01686 0.91035 0.92745 1.21843 1.03097 0.90825 1.01815 1.21114 0.75919 0.89366 0.82210 1.90704 1.50803 1.68275 1.30674 1.48303 1.68963 1.13191 1.05897 1.21931 0.96238 0.81079 1.03640 1.21785 0.98577 0.96404 0.86161 1.45418 1.62290 1.08719 1.20700 1.20343 0.79653 0.83109 0.87030 1.90838 1.48035 1.75471 1.27654 1.21926 1.02394 0.96126 0.82553 0.91587 0.91562 0.91248 0.93046 0.93082 0.92301 0.90416 0.90893 0.91178 0.91357 0.91151 0.88602 0.88857 0.90298 0.86819 0.89161 0.90949 0.76372 0.85670 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.26 36.01 0.37 -0.52 16 2 C 0.05 0.95 7.22 -82.40 -0.59 0.35 16 3 N -0.30 -6.76 12.58 33.67 0.42 -6.33 16 4 N -0.32 -7.51 3.60 -58.31 -0.21 -7.72 16 5 C 0.26 6.57 6.00 -5.19 -0.03 6.53 16 6 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 10 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 15 C -0.09 -1.40 9.72 36.01 0.35 -1.05 16 16 C -0.27 -4.70 5.35 -105.06 -0.56 -5.26 16 17 C -0.01 -0.13 4.41 -27.88 -0.12 -0.25 16 18 C -0.14 -1.44 4.12 -27.88 -0.11 -1.55 16 19 C 0.52 5.50 7.72 -10.99 -0.08 5.41 16 20 O -0.53 -7.19 15.46 5.55 0.09 -7.10 16 21 N -0.63 -4.86 2.98 -174.17 -0.52 -5.37 16 22 C 0.09 0.52 6.53 -3.63 -0.02 0.49 16 23 C 0.10 0.40 7.34 -4.51 -0.03 0.36 16 24 N -0.72 -4.42 5.43 -61.29 -0.33 -4.75 16 25 C 0.51 4.54 7.85 -11.67 -0.09 4.45 16 26 O -0.54 -7.05 17.81 5.55 0.10 -6.95 16 27 C 0.10 0.68 6.39 -5.03 -0.03 0.65 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 31 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.05 1.29 7.05 -51.93 -0.37 0.93 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.22 7.08 -51.93 -0.37 0.85 16 36 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 37 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 38 H 0.07 0.95 7.21 -51.93 -0.37 0.58 16 39 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 40 H 0.09 0.95 7.57 -51.93 -0.39 0.56 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.11 0.71 7.06 -51.93 -0.37 0.34 16 43 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.40 2.07 8.80 -40.82 -0.36 1.71 16 46 H 0.13 0.89 6.27 -51.93 -0.33 0.57 16 47 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -35.24 389.86 -7.91 -43.15 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.08 Total: -0.03 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.96 Total: -2.51 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.10 Total: -48.61 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.18 Total: -14.06 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.24 -7.91 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044337938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.369 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds