Wall clock time and date at job start Tue Mar 31 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47225 * 2 1 4 4 C 1.53005 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47165 * 179.97438 * 4 3 2 6 6 O 1.21298 * 120.00160 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99964 * 179.97438 * 5 4 3 8 8 C 1.40179 * 119.99970 * 185.27431 * 7 5 4 9 9 C 1.39169 * 119.89285 * 213.41001 * 8 7 5 10 10 C 1.37892 * 120.37202 * 179.72439 * 9 8 7 11 11 C 1.38948 * 120.14571 * 0.54943 * 10 9 8 12 12 N 1.39009 * 120.11185 * 179.74787 * 11 10 9 13 13 C 1.46904 * 111.00136 * 295.77269 * 12 11 10 14 14 C 1.46903 * 110.99912 * 59.72097 * 12 11 10 15 15 C 1.50701 * 109.46870 * 170.00044 * 14 12 11 16 16 H 1.08004 * 120.00215 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99685 * 180.02562 * 15 14 12 18 18 N 1.31506 * 120.00210 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47468 * 60.00404 * 19 17 15 21 21 H 1.48503 * 109.47301 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47430 * 299.99940 * 19 17 15 23 23 C 1.40362 * 119.77934 * 359.47415 * 11 10 9 24 24 C 1.47293 * 120.18456 * 180.27391 * 23 11 10 25 25 O 1.21524 * 119.99594 * 359.97438 * 24 23 11 26 26 O 1.34766 * 120.00449 * 180.02562 * 24 23 11 27 27 C 1.38309 * 119.89184 * 33.43002 * 8 7 5 28 28 H 1.09010 * 109.47008 * 300.00318 * 1 2 3 29 29 H 1.08995 * 109.47286 * 59.99794 * 1 2 3 30 30 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47193 * 239.99741 * 2 1 3 32 32 H 1.09002 * 109.47521 * 119.99564 * 2 1 3 33 33 H 1.08998 * 109.47112 * 60.00232 * 3 2 1 34 34 H 1.09004 * 109.47084 * 299.99689 * 3 2 1 35 35 H 1.09003 * 109.46826 * 59.99601 * 4 3 2 36 36 H 1.09004 * 109.46737 * 299.99734 * 4 3 2 37 37 H 0.96997 * 120.00412 * 5.27951 * 7 5 4 38 38 H 1.08003 * 119.81475 * 0.02562 * 9 8 7 39 39 H 1.07996 * 119.92808 * 180.27862 * 10 9 8 40 40 H 1.08998 * 109.47657 * 183.95521 * 13 12 11 41 41 H 1.08997 * 109.47272 * 63.94558 * 13 12 11 42 42 H 1.09000 * 109.46829 * 303.95292 * 13 12 11 43 43 H 1.08997 * 109.47109 * 290.00177 * 14 12 11 44 44 H 1.08998 * 109.46683 * 50.00439 * 14 12 11 45 45 H 0.97005 * 120.00011 * 179.97438 * 18 17 15 46 46 H 0.96694 * 117.00235 * 180.02562 * 26 24 23 47 47 H 1.08002 * 120.07547 * 0.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2842 3.7853 -0.0017 7 7 5.3974 3.1095 -0.0014 8 6 5.8657 4.4261 0.1096 9 6 7.0353 4.8036 -0.5432 10 6 7.5018 6.0975 -0.4454 11 6 6.8118 7.0324 0.3166 12 7 7.2855 8.3352 0.4190 13 6 8.5882 8.3700 1.0971 14 6 7.3628 8.9726 -0.9023 15 6 7.6405 10.4443 -0.7346 16 1 7.7493 10.8640 0.2546 17 6 7.7558 11.2549 -1.8439 18 7 7.6229 10.7439 -3.0484 19 14 8.1008 13.0789 -1.6360 20 1 9.3909 13.2607 -0.9234 21 1 8.1776 13.7236 -2.9716 22 1 7.0077 13.7029 -0.8479 23 6 5.6316 6.6583 0.9780 24 6 4.8897 7.6436 1.7832 25 8 5.2994 8.7839 1.8766 26 8 3.7573 7.2804 2.4171 27 6 5.1639 5.3456 0.8679 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9287 -0.8909 36 1 3.9337 0.9285 0.8892 37 1 6.0271 2.3757 -0.0784 38 1 7.5782 4.0803 -1.1337 39 1 8.4079 6.3839 -0.9586 40 1 8.9031 9.4055 1.2265 41 1 9.3254 7.8386 0.4953 42 1 8.5028 7.8916 2.0728 43 1 8.1656 8.5149 -1.4802 44 1 6.4162 8.8389 -1.4260 45 1 7.7037 11.3143 -3.8288 46 1 3.3052 7.9617 2.9331 47 1 4.2568 5.0500 1.3741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046053427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:54 Heat of formation + Delta-G solvation = -119.216336 kcal Electronic energy + Delta-G solvation = -28610.621031 eV Core-core repulsion = 24564.423600 eV Total energy + Delta-G solvation = -4046.197431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89415 -40.97987 -39.91254 -37.96065 -36.79487 -36.19837 -35.47282 -34.50934 -32.47116 -31.69891 -30.03444 -29.05218 -26.92995 -25.82860 -25.41855 -24.38164 -22.66404 -22.21899 -21.50226 -21.10942 -19.33662 -18.64969 -18.46377 -17.95990 -17.43214 -16.97695 -16.76163 -16.71943 -16.43142 -16.24988 -15.59796 -15.44246 -15.29039 -15.01481 -14.72669 -14.54606 -14.18401 -14.04328 -13.86312 -13.67787 -13.53117 -13.23175 -13.09045 -12.91975 -12.81817 -12.57384 -12.41332 -12.38535 -12.16217 -12.06799 -12.04023 -11.83168 -11.57499 -11.40852 -11.39236 -11.24579 -10.87865 -10.63632 -10.10864 -9.08591 -9.05439 -8.21934 -6.31378 -0.34084 0.15638 1.37895 1.42554 1.46304 1.50283 1.76630 1.98928 2.21074 2.38999 2.71784 3.09296 3.15723 3.64056 3.81966 3.92935 3.97046 4.10994 4.19270 4.31382 4.37782 4.46819 4.48325 4.51289 4.63276 4.68284 4.79426 4.80998 4.87841 4.97608 5.00893 5.04274 5.05409 5.10956 5.14759 5.19896 5.25282 5.33169 5.43135 5.43674 5.54922 5.65744 5.70062 5.80753 6.06429 6.21383 6.45318 6.77706 6.81668 7.15915 7.18604 7.36873 8.88664 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.002488 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.304403 B =11252.298924 C =11493.883492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.126 4.126 5 C 0.502 3.498 6 O -0.566 6.566 7 N -0.657 5.657 8 C 0.122 3.878 9 C -0.078 4.078 10 C -0.151 4.151 11 C 0.132 3.868 12 N -0.513 5.513 13 C 0.054 3.946 14 C 0.226 3.774 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.276 1.276 23 C -0.120 4.120 24 C 0.514 3.486 25 O -0.501 6.501 26 O -0.514 6.514 27 C -0.064 4.064 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.433 0.567 38 H 0.174 0.826 39 H 0.133 0.867 40 H 0.062 0.938 41 H 0.030 0.970 42 H 0.066 0.934 43 H -0.018 1.018 44 H -0.013 1.013 45 H 0.265 0.735 46 H 0.426 0.574 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 -27.164 7.878 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.147 4.147 4 C -0.165 4.165 5 C 0.293 3.707 6 O -0.444 6.444 7 N -0.305 5.305 8 C 0.028 3.972 9 C -0.099 4.099 10 C -0.172 4.172 11 C 0.035 3.965 12 N -0.234 5.234 13 C -0.092 4.092 14 C 0.102 3.898 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.795 3.205 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.202 1.202 23 C -0.122 4.122 24 C 0.357 3.643 25 O -0.389 6.389 26 O -0.328 6.328 27 C -0.085 4.085 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.274 0.726 38 H 0.192 0.808 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.000 1.000 44 H 0.005 0.995 45 H 0.074 0.926 46 H 0.286 0.714 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.243 -26.221 7.798 28.060 hybrid contribution 0.455 1.339 -0.421 1.475 sum -5.788 -24.882 7.378 26.591 Atomic orbital electron populations 1.21805 0.96308 1.01982 1.01454 1.21507 0.95680 0.95127 1.03236 1.21387 0.93586 0.97703 1.02013 1.21764 0.97179 0.90094 1.07504 1.21874 0.81286 0.93605 0.73981 1.90778 1.56210 1.48208 1.49200 1.43503 1.08248 1.06020 1.72700 1.17570 0.95444 0.86435 0.97797 1.21267 0.95604 0.95940 0.97055 1.21692 1.01548 0.93861 1.00078 1.19252 0.93029 0.90081 0.94091 1.59390 1.28178 1.12907 1.22928 1.22156 0.87586 1.02068 0.97436 1.19313 0.93370 0.93856 0.83297 1.21366 1.47979 0.93677 0.92906 0.92332 1.25896 0.95148 1.03900 0.94669 1.70069 1.51176 1.37656 0.98366 0.85426 0.79060 0.78716 0.77329 1.18739 1.20400 1.20157 1.19036 0.96327 0.93614 1.03269 1.20819 0.79007 0.86839 0.77635 1.91018 1.67457 1.21314 1.59069 1.84544 1.37626 1.48111 1.62503 1.21278 0.99679 0.90959 0.96599 0.93283 0.93445 0.91724 0.90687 0.90528 0.92918 0.93235 0.85605 0.85410 0.72628 0.80835 0.84873 0.91904 0.95173 0.91505 1.00011 0.99522 0.92601 0.71376 0.83895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.02 5.93 30.59 0.18 -0.84 16 3 C -0.11 -1.46 4.50 30.60 0.14 -1.32 16 4 C -0.13 -1.13 5.70 29.85 0.17 -0.96 16 5 C 0.50 9.57 7.56 87.66 0.66 10.24 16 6 O -0.57 -17.18 13.67 -3.09 -0.04 -17.23 16 7 N -0.66 -10.50 5.35 -303.50 -1.62 -12.12 16 8 C 0.12 3.06 6.28 38.05 0.24 3.30 16 9 C -0.08 -1.89 9.94 22.41 0.22 -1.67 16 10 C -0.15 -5.04 8.67 22.36 0.19 -4.85 16 11 C 0.13 5.42 4.66 38.69 0.18 5.60 16 12 N -0.51 -24.79 2.65 -723.58 -1.91 -26.70 16 13 C 0.05 2.23 9.09 127.69 1.16 3.39 16 14 C 0.23 12.87 4.29 85.56 0.37 13.24 16 15 C -0.52 -31.56 8.52 25.60 0.22 -31.34 16 16 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 17 C 0.00 0.11 5.46 84.66 0.46 0.57 16 18 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 19 Si 0.97 46.64 29.54 68.60 2.03 48.66 16 20 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 C -0.12 -4.65 5.89 -20.00 -0.12 -4.77 16 24 C 0.51 20.74 8.26 70.20 0.58 21.32 16 25 O -0.50 -24.23 15.80 19.76 0.31 -23.92 16 26 O -0.51 -15.92 12.68 -56.77 -0.72 -16.64 16 27 C -0.06 -2.07 8.22 22.66 0.19 -1.88 16 28 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.05 0.88 8.10 -2.38 -0.02 0.86 16 35 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.13 0.43 8.14 -2.38 -0.02 0.42 16 37 H 0.43 2.72 8.82 -92.71 -0.82 1.90 16 38 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.13 4.44 7.14 -2.91 -0.02 4.42 16 40 H 0.06 2.79 6.86 -2.39 -0.02 2.78 16 41 H 0.03 1.14 7.47 -2.39 -0.02 1.12 16 42 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 43 H -0.02 -1.03 7.45 -2.39 -0.02 -1.04 16 44 H -0.01 -0.86 8.06 -2.39 -0.02 -0.88 16 45 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 46 H 0.43 9.03 9.11 -74.06 -0.67 8.36 16 47 H 0.14 4.69 5.96 -2.91 -0.02 4.68 16 Total: -1.00 -86.17 392.81 3.39 -82.78 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.49 Total: 13.74 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.56 Total: 9.08 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -3.25 Total: -96.48 kcal Atomic # 8 Polarization: -57.34 SS G_CDS: -0.45 Total: -57.78 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -86.17 3.39 -82.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046053427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.437 kcal (2) G-P(sol) polarization free energy of solvation -86.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds