Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46805 * 300.00109 * 3 2 1 6 6 H 1.48499 * 109.47244 * 59.99786 * 3 2 1 7 7 C 1.38948 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99884 * 157.03372 * 7 2 1 9 9 N 1.37098 * 120.00385 * 337.03325 * 7 2 1 10 10 C 1.46503 * 119.99709 * 325.46132 * 9 7 2 11 11 C 1.50700 * 109.47240 * 266.52856 * 10 9 7 12 12 C 1.38240 * 119.99748 * 264.84635 * 11 10 9 13 13 C 1.38237 * 119.99574 * 179.76925 * 12 11 10 14 14 C 1.38234 * 120.00165 * 0.50067 * 13 12 11 15 15 C 1.38234 * 119.99917 * 359.75288 * 14 13 12 16 16 C 1.38229 * 120.00236 * 359.97438 * 15 14 13 17 17 C 1.34776 * 120.00240 * 145.46401 * 9 7 2 18 18 O 1.21298 * 119.99714 * 179.97438 * 17 9 7 19 19 C 1.50695 * 119.99949 * 359.97438 * 17 9 7 20 20 C 1.50700 * 109.47112 * 179.97438 * 19 17 9 21 21 C 1.34239 * 126.50458 * 265.02461 * 20 19 17 22 22 N 1.36834 * 109.92825 * 179.97438 * 21 20 19 23 23 H 0.96996 * 125.06067 * 180.02562 * 22 21 20 24 24 C 1.37685 * 109.87817 * 0.02562 * 22 21 20 25 25 C 1.39115 * 133.50540 * 180.02562 * 24 22 21 26 26 C 1.37756 * 119.77930 * 179.97438 * 25 24 22 27 27 C 1.38831 * 120.66231 * 359.97438 * 26 25 24 28 28 C 1.36628 * 120.53281 * 0.02562 * 27 26 25 29 29 C 1.39640 * 119.76117 * 359.69397 * 28 27 26 30 30 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47131 * 26.52468 * 10 9 7 32 32 H 1.09003 * 109.47251 * 146.52941 * 10 9 7 33 33 H 1.07994 * 120.00171 * 359.97438 * 12 11 10 34 34 H 1.08005 * 119.99785 * 180.23261 * 13 12 11 35 35 H 1.07994 * 120.00138 * 179.72526 * 14 13 12 36 36 H 1.08006 * 119.99937 * 179.97438 * 15 14 13 37 37 H 1.07999 * 120.00363 * 179.97438 * 16 15 14 38 38 H 1.08998 * 109.47404 * 299.99700 * 19 17 9 39 39 H 1.09002 * 109.47378 * 60.00047 * 19 17 9 40 40 H 1.07990 * 125.03450 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.11397 * 359.94509 * 25 24 22 42 42 H 1.08001 * 119.66812 * 179.97438 * 26 25 24 43 43 H 1.08005 * 119.73405 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.12064 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0245 -1.2404 -0.3655 9 7 1.4048 -2.3438 0.4622 10 6 0.4559 -2.2699 1.5760 11 6 1.1825 -2.5202 2.8724 12 6 1.2089 -3.7911 3.4157 13 6 1.8794 -4.0216 4.6023 14 6 2.5147 -2.9792 5.2510 15 6 2.4838 -1.7074 4.7104 16 6 1.8182 -1.4779 3.5209 17 6 1.6839 -3.5330 -0.1074 18 8 1.1498 -4.5420 0.3024 19 6 2.6595 -3.6089 -1.2534 20 6 2.7939 -5.0405 -1.7047 21 6 3.7329 -5.9164 -1.3133 22 7 3.5356 -7.1199 -1.9336 23 1 4.0873 -7.9080 -1.8092 24 6 2.4373 -7.0458 -2.7607 25 6 1.8094 -7.9578 -3.6029 26 6 0.6976 -7.5738 -4.3199 27 6 0.1953 -6.2842 -4.2107 28 6 0.7963 -5.3725 -3.3895 29 6 1.9210 -5.7421 -2.6490 30 1 -0.4850 0.8401 0.0004 31 1 0.0004 -1.2799 1.6002 32 1 -0.3200 -3.0238 1.4430 33 1 0.7085 -4.6044 2.9113 34 1 1.9032 -5.0152 5.0249 35 1 3.0348 -3.1584 6.1804 36 1 2.9799 -0.8929 5.2175 37 1 1.7937 -0.4841 3.0987 38 1 2.2963 -2.9994 -2.0809 39 1 3.6315 -3.2381 -0.9283 40 1 4.5259 -5.7029 -0.6121 41 1 2.1925 -8.9634 -3.6947 42 1 0.2117 -8.2832 -4.9735 43 1 -0.6771 -5.9991 -4.7800 44 1 0.3997 -4.3712 -3.3093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054246790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = 53.454960 kcal Electronic energy + Delta-G solvation = -27976.672260 eV Core-core repulsion = 24245.271338 eV Total energy + Delta-G solvation = -3731.400922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89646 -38.98461 -37.84801 -36.55798 -34.80888 -32.54830 -31.81907 -30.81754 -30.25260 -29.65599 -28.92433 -26.87670 -25.54371 -24.15526 -22.51503 -21.88647 -21.42598 -20.85395 -19.49050 -18.74777 -17.59063 -16.70125 -16.22831 -15.98572 -15.65327 -15.17083 -14.79249 -14.50913 -14.25241 -14.23393 -14.01649 -13.86607 -13.60030 -13.39544 -12.79334 -12.70280 -12.48545 -12.15229 -12.12580 -11.81860 -11.49901 -11.44493 -11.33340 -11.29933 -10.92033 -10.90545 -10.61556 -10.45167 -10.39202 -10.29288 -10.07974 -9.27660 -9.14652 -8.45916 -8.30243 -8.03172 -7.86307 -7.54543 -7.22543 -6.40741 -4.04991 1.47513 1.95976 1.97877 2.02671 3.07790 3.08311 3.20841 3.24066 3.44160 3.97393 4.09634 4.26272 4.38649 4.94863 5.04576 5.10822 5.18091 5.30889 5.44139 5.44558 5.50273 5.60250 5.64790 5.74152 5.89176 5.94179 6.10861 6.13632 6.18990 6.21812 6.27168 6.37730 6.45744 6.54354 6.63932 6.65790 6.81212 6.81987 6.95389 7.06013 7.07585 7.09594 7.20218 7.22853 7.43034 7.49371 7.52657 7.65653 7.85572 7.92225 8.36227 9.07911 9.55103 9.98782 10.61216 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.004064 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.553757 B = 6888.139084 C = 8454.297043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.044 3.956 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.334 4.334 8 H 0.090 0.910 9 N -0.437 5.437 10 C 0.147 3.853 11 C -0.076 4.076 12 C -0.102 4.102 13 C -0.133 4.133 14 C -0.136 4.136 15 C -0.133 4.133 16 C -0.098 4.098 17 C 0.478 3.522 18 O -0.591 6.591 19 C -0.051 4.051 20 C -0.123 4.123 21 C 0.042 3.958 22 N -0.599 5.599 23 H 0.410 0.590 24 C 0.094 3.906 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.157 4.157 28 C -0.057 4.057 29 C -0.087 4.087 30 H 0.269 0.731 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 -8.030 -1.060 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.162 4.162 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.462 4.462 8 H 0.108 0.892 9 N -0.156 5.156 10 C 0.023 3.977 11 C -0.078 4.078 12 C -0.120 4.120 13 C -0.151 4.151 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.116 4.116 17 C 0.266 3.734 18 O -0.476 6.476 19 C -0.091 4.091 20 C -0.130 4.130 21 C -0.082 4.082 22 N -0.202 5.202 23 H 0.246 0.754 24 C -0.013 4.013 25 C -0.160 4.160 26 C -0.124 4.124 27 C -0.176 4.176 28 C -0.076 4.076 29 C -0.092 4.092 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.182 0.818 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.982 -8.440 -0.828 9.835 hybrid contribution 0.768 0.609 0.211 1.003 sum 5.750 -7.831 -0.617 9.735 Atomic orbital electron populations 1.69955 1.06214 1.27695 1.45352 1.25267 0.94947 0.99678 0.96275 0.86233 0.80332 0.82275 0.78099 1.19099 1.20710 1.20454 1.19435 0.97539 0.85688 1.43534 0.89239 1.43391 1.39742 1.05699 1.26765 1.20387 0.90952 1.04650 0.81676 1.20659 0.97611 0.92812 0.96667 1.21251 0.98749 0.97025 0.95010 1.21038 0.99375 0.98351 0.96363 1.20949 1.01150 0.93422 0.99916 1.21045 1.00668 0.96655 0.96748 1.21118 0.96710 0.99451 0.94348 1.20341 0.84927 0.83812 0.84275 1.90527 1.55523 1.35555 1.65964 1.19760 0.99853 0.91264 0.98228 1.19962 0.96337 0.96025 1.00718 1.21460 1.02156 0.84459 1.00137 1.41582 1.26418 1.12684 1.39551 0.75406 1.18230 0.90626 0.96091 0.96345 1.19895 0.98326 0.97856 0.99906 1.20691 0.95891 0.96344 0.99468 1.20554 1.01367 0.93876 1.01792 1.20368 0.93470 0.99663 0.94100 1.19068 0.97287 0.92957 0.99875 0.92046 0.86835 0.92066 0.85933 0.87126 0.87220 0.86992 0.86187 0.88823 0.89795 0.81844 0.86915 0.86367 0.86458 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.63 11.40 55.50 0.63 -21.00 16 2 C 0.04 1.06 4.91 -17.47 -0.09 0.97 16 3 Si 0.90 18.64 29.61 -169.99 -5.03 13.60 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.33 -8.04 8.68 -14.93 -0.13 -8.17 16 8 H 0.09 2.07 7.00 -52.49 -0.37 1.70 16 9 N -0.44 -10.57 2.53 -116.09 -0.29 -10.86 16 10 C 0.15 3.46 5.07 -5.19 -0.03 3.43 16 11 C -0.08 -1.61 5.44 -104.62 -0.57 -2.18 16 12 C -0.10 -2.02 9.60 -39.58 -0.38 -2.40 16 13 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 14 C -0.14 -2.17 10.05 -39.58 -0.40 -2.57 16 15 C -0.13 -2.25 10.05 -39.59 -0.40 -2.65 16 16 C -0.10 -1.92 9.72 -39.58 -0.38 -2.31 16 17 C 0.48 11.29 7.60 -10.99 -0.08 11.21 16 18 O -0.59 -15.22 15.28 5.54 0.08 -15.13 16 19 C -0.05 -1.01 4.89 -29.04 -0.14 -1.15 16 20 C -0.12 -2.30 4.81 -102.71 -0.49 -2.80 16 21 C 0.04 0.67 11.73 -16.73 -0.20 0.47 16 22 N -0.60 -8.37 6.07 -10.65 -0.06 -8.44 16 23 H 0.41 4.13 8.96 -40.82 -0.37 3.77 16 24 C 0.09 1.52 7.28 -83.99 -0.61 0.91 16 25 C -0.14 -1.94 10.08 -39.43 -0.40 -2.33 16 26 C -0.10 -1.42 10.01 -39.54 -0.40 -1.81 16 27 C -0.16 -2.34 9.97 -39.94 -0.40 -2.74 16 28 C -0.06 -1.02 10.05 -39.64 -0.40 -1.41 16 29 C -0.09 -1.62 6.35 -105.13 -0.67 -2.28 16 30 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.11 2.82 5.37 -51.93 -0.28 2.54 16 32 H 0.06 1.51 7.44 -51.93 -0.39 1.12 16 33 H 0.12 2.55 7.75 -52.49 -0.41 2.14 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 38 H 0.09 1.88 8.10 -51.93 -0.42 1.46 16 39 H 0.08 1.53 7.65 -51.93 -0.40 1.13 16 40 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 44 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -29.90 375.64 -11.13 -41.04 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -5.56 Total: 15.61 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -6.55 Total: -20.48 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.27 Total: -40.30 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.90 -11.13 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.490 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds