Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36018 * 116.99878 * 2 1 4 4 C 1.38506 * 120.07907 * 359.97438 * 3 2 1 5 5 C 1.38283 * 120.01526 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.18231 * 0.02562 * 5 4 3 7 7 C 1.38226 * 120.15757 * 359.97348 * 6 5 4 8 8 C 1.38721 * 119.97951 * 359.77261 * 7 6 5 9 9 N 1.39964 * 120.08768 * 180.25113 * 8 7 6 10 10 C 1.46901 * 111.00243 * 297.84247 * 9 8 7 11 11 C 1.50701 * 109.46930 * 293.95437 * 10 9 8 12 12 H 1.07994 * 120.00248 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00032 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99620 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00162 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46857 * 89.99705 * 15 13 11 17 17 H 1.48495 * 109.47141 * 209.99926 * 15 13 11 18 18 H 1.48496 * 109.47141 * 330.00062 * 15 13 11 19 19 C 1.46904 * 111.00214 * 61.79805 * 9 8 7 20 20 C 1.52991 * 109.47188 * 75.97836 * 19 9 8 21 21 O 1.42902 * 109.50169 * 294.74754 * 20 19 9 22 22 C 1.53114 * 109.50462 * 54.82769 * 20 19 9 23 23 C 1.53127 * 109.16066 * 177.59335 * 22 20 19 24 24 C 1.53035 * 109.28087 * 302.34737 * 23 22 20 25 25 N 1.46853 * 109.52111 * 59.17726 * 24 23 22 26 26 C 1.46901 * 110.99574 * 174.15960 * 25 24 23 27 27 C 1.46845 * 111.19705 * 298.25873 * 25 24 23 28 28 H 1.09005 * 109.47126 * 299.99720 * 1 2 3 29 29 H 1.09000 * 109.47005 * 60.00059 * 1 2 3 30 30 H 1.09004 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99075 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.90354 * 179.97438 * 5 4 3 33 33 H 1.07992 * 119.91875 * 179.97438 * 6 5 4 34 34 H 1.08003 * 120.00520 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.46865 * 53.95249 * 10 9 8 36 36 H 1.09001 * 109.47685 * 173.95612 * 10 9 8 37 37 H 0.97004 * 119.99517 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.46874 * 195.98202 * 19 9 8 39 39 H 1.08997 * 109.46781 * 315.97552 * 19 9 8 40 40 H 0.96696 * 114.00093 * 300.00241 * 21 20 19 41 41 H 1.09001 * 109.52680 * 297.49990 * 22 20 19 42 42 H 1.08999 * 109.52213 * 57.63149 * 22 20 19 43 43 H 1.09008 * 109.49765 * 62.29245 * 23 22 20 44 44 H 1.08998 * 109.50352 * 182.40049 * 23 22 20 45 45 H 1.09000 * 109.46191 * 179.19311 * 24 23 22 46 46 H 1.08997 * 109.46234 * 299.16541 * 24 23 22 47 47 H 1.09000 * 109.46954 * 63.95573 * 26 25 24 48 48 H 1.09000 * 109.46773 * 183.95152 * 26 25 24 49 49 H 1.08997 * 109.47572 * 303.95351 * 26 25 24 50 50 H 1.09000 * 109.46339 * 301.72437 * 27 25 24 51 51 H 1.09005 * 109.46024 * 181.75768 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9229 3.6060 -0.0011 6 6 3.3034 3.6812 -0.0016 7 6 4.0618 2.5256 -0.0011 8 6 3.4376 1.2868 0.0048 9 7 4.2034 0.1153 0.0107 10 6 5.0279 0.0191 -1.2013 11 6 4.1351 -0.1422 -2.4047 12 1 3.0626 -0.1700 -2.2815 13 6 4.6876 -0.2531 -3.6631 14 7 5.9937 -0.2177 -3.8132 15 14 3.5809 -0.4523 -5.1548 16 1 3.2342 0.8864 -5.6961 17 1 4.2901 -1.2388 -6.1957 18 1 2.3387 -1.1627 -4.7582 19 6 5.0336 0.0350 1.2199 20 6 4.1604 -0.3584 2.4130 21 8 3.2169 0.6819 2.6771 22 6 3.4140 -1.6567 2.0941 23 6 2.5895 -2.0752 3.3147 24 6 3.5184 -2.2398 4.5197 25 7 4.2084 -0.9707 4.7843 26 6 5.0034 -1.0510 6.0170 27 6 5.0437 -0.5727 3.6441 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2152 2.3193 -0.0014 32 1 1.3341 4.5114 -0.0019 33 1 3.7903 4.6452 -0.0024 34 1 5.1401 2.5873 -0.0011 35 1 5.6225 0.9262 -1.3091 36 1 5.6906 -0.8427 -1.1226 37 1 6.3823 -0.2954 -4.6986 38 1 5.8124 -0.7142 1.0769 39 1 5.4932 1.0049 1.4101 40 1 3.6206 1.5348 2.8883 41 1 2.7507 -1.4963 1.2441 42 1 4.1324 -2.4400 1.8528 43 1 1.8450 -1.3088 3.5310 44 1 2.0892 -3.0214 3.1088 45 1 2.9324 -2.5238 5.3938 46 1 4.2539 -3.0157 4.3079 47 1 5.7936 -1.7914 5.8921 48 1 5.4473 -0.0779 6.2269 49 1 4.3595 -1.3432 6.8464 50 1 5.7722 -1.3565 3.4364 51 1 5.5657 0.3541 3.8824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057279839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = -36.377384 kcal Electronic energy + Delta-G solvation = -31780.422872 eV Core-core repulsion = 27873.650701 eV Total energy + Delta-G solvation = -3906.772170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.06070 -39.09515 -37.25973 -36.02931 -34.98762 -32.67757 -32.43250 -30.58248 -29.51859 -28.97435 -27.22171 -26.70364 -26.42172 -24.58025 -22.90566 -22.58701 -21.51274 -21.28614 -19.90543 -19.42852 -17.49966 -16.59011 -16.09226 -15.74554 -15.65065 -15.21545 -15.01890 -14.87632 -14.62907 -14.43460 -14.33979 -13.90907 -13.82183 -13.51122 -13.16950 -13.14374 -12.66610 -12.51492 -12.21767 -12.14744 -11.92079 -11.75749 -11.68255 -11.57927 -11.34320 -11.14394 -11.11151 -10.74625 -10.69746 -10.61566 -10.50758 -10.37371 -10.30420 -9.96919 -9.85449 -9.47831 -9.08098 -8.41442 -8.24993 -8.11661 -7.33664 -7.26977 -5.98503 -3.97240 1.96869 2.17626 3.35242 3.40856 3.46140 3.88040 3.97480 4.42814 4.45635 4.66662 4.81281 4.98446 5.06257 5.19404 5.24342 5.35544 5.37876 5.39675 5.44133 5.52899 5.55911 5.58111 5.61413 5.65556 5.67519 5.74327 5.75630 5.77266 5.86707 5.89012 6.04974 6.10879 6.19727 6.21930 6.23568 6.31860 6.41656 6.75552 6.84416 6.96580 7.00120 7.10316 7.12053 7.13482 7.19798 7.36913 7.43475 7.84156 7.96521 8.12689 8.18964 8.44658 8.61047 9.11469 9.66175 11.12697 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.004632 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.029434 B = 6043.208356 C = 6678.507659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.283 6.283 3 C 0.170 3.830 4 C -0.214 4.214 5 C -0.102 4.102 6 C -0.155 4.155 7 C -0.121 4.121 8 C 0.126 3.874 9 N -0.486 5.486 10 C 0.198 3.802 11 C -0.495 4.495 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.902 5.902 15 Si 0.894 3.106 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.033 3.967 20 C 0.152 3.848 21 O -0.531 6.531 22 C -0.098 4.098 23 C -0.112 4.112 24 C 0.057 3.943 25 N -0.531 5.531 26 C 0.025 3.975 27 C 0.031 3.969 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.116 0.884 35 H -0.006 1.006 36 H 0.032 0.968 37 H 0.260 0.740 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.360 0.640 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.020 0.980 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.038 0.962 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 1.399 16.086 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.195 6.195 3 C 0.124 3.876 4 C -0.234 4.234 5 C -0.120 4.120 6 C -0.174 4.174 7 C -0.141 4.141 8 C 0.031 3.969 9 N -0.207 5.207 10 C 0.075 3.925 11 C -0.534 4.534 12 H 0.083 0.917 13 C -0.145 4.145 14 N -0.542 5.542 15 Si 0.722 3.278 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.095 4.095 20 C 0.110 3.890 21 O -0.334 6.334 22 C -0.136 4.136 23 C -0.150 4.150 24 C -0.071 4.071 25 N -0.255 5.255 26 C -0.123 4.123 27 C -0.098 4.098 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.012 0.988 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.205 0.795 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.039 0.961 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.476 0.607 15.886 17.167 hybrid contribution 1.086 0.601 -0.995 1.591 sum -5.390 1.207 14.892 15.883 Atomic orbital electron populations 1.22932 0.80718 1.02958 1.00236 1.86275 1.18932 1.26392 1.87896 1.18708 0.90962 0.83690 0.94286 1.20993 0.99194 0.92560 1.10609 1.20649 0.94414 0.96357 1.00598 1.20700 0.93754 0.97523 1.05421 1.21344 0.99618 0.92559 1.00569 1.17832 0.89841 0.89065 1.00161 1.59680 1.25373 1.33244 1.02436 1.19878 0.91673 0.96066 0.84921 1.21124 0.93749 1.48296 0.90204 0.91688 1.24925 0.94935 0.95699 0.98907 1.69953 1.09828 1.51457 1.22975 0.86555 0.80786 0.78016 0.82465 1.20853 1.21354 1.19763 1.22789 0.95122 0.99933 0.91679 1.21125 0.88522 0.89509 0.89864 1.86615 1.34651 1.20140 1.91972 1.21440 0.99742 0.93449 0.98939 1.21533 0.98324 1.01060 0.94044 1.22132 0.96737 0.89306 0.98924 1.61808 1.29698 1.31355 1.02599 1.22354 0.96392 1.00879 0.92666 1.22796 0.94781 1.00288 0.91951 0.93518 0.93603 0.89135 0.86473 0.87096 0.87196 0.86635 0.98778 0.95030 0.93080 0.90657 0.95115 0.79452 0.87688 0.92182 0.90645 0.92257 0.91442 0.95464 0.96104 0.91651 0.91639 0.94395 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.28 -5.38 8.72 -19.80 -0.17 -5.55 16 3 C 0.17 3.27 5.83 -39.08 -0.23 3.05 16 4 C -0.21 -3.60 9.04 -39.47 -0.36 -3.96 16 5 C -0.10 -1.61 10.04 -39.56 -0.40 -2.00 16 6 C -0.15 -2.56 10.04 -39.58 -0.40 -2.95 16 7 C -0.12 -2.26 8.29 -39.41 -0.33 -2.59 16 8 C 0.13 2.53 2.44 -83.57 -0.20 2.32 16 9 N -0.49 -10.18 3.25 -172.31 -0.56 -10.74 16 10 C 0.20 5.05 4.58 -4.98 -0.02 5.02 16 11 C -0.50 -13.96 8.73 -34.44 -0.30 -14.26 16 12 H 0.06 1.88 7.47 -52.49 -0.39 1.49 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 19 C 0.03 0.57 4.24 -3.83 -0.02 0.56 16 20 C 0.15 2.28 0.75 -90.55 -0.07 2.21 16 21 O -0.53 -8.26 10.08 -35.23 -0.36 -8.61 16 22 C -0.10 -1.56 4.75 -26.61 -0.13 -1.68 16 23 C -0.11 -1.52 5.94 -26.65 -0.16 -1.67 16 24 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 25 N -0.53 -6.62 4.79 -242.96 -1.16 -7.78 16 26 C 0.03 0.26 9.59 60.07 0.58 0.83 16 27 C 0.03 0.40 4.41 -3.84 -0.02 0.38 16 28 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 29 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16 32 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.12 2.15 7.06 -52.48 -0.37 1.78 16 35 H -0.01 -0.15 7.06 -51.93 -0.37 -0.52 16 36 H 0.03 0.86 7.83 -51.93 -0.41 0.45 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.32 7.73 -51.93 -0.40 0.91 16 39 H 0.03 0.51 6.82 -51.93 -0.35 0.15 16 40 H 0.36 4.99 9.05 45.56 0.41 5.40 16 41 H 0.10 1.97 5.99 -51.93 -0.31 1.66 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.13 7.80 -51.92 -0.40 0.73 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 50 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -31.30 394.55 -9.68 -40.99 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.92 Total: 5.85 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.17 Total: -11.20 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.99 Total: -44.56 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.53 Total: -14.17 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.30 -9.68 -40.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057279839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.608 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds