Wall clock time and date at job start Tue Mar 31 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30113 * 124.94947 * 2 1 4 4 C 1.35786 * 109.64136 * 180.25993 * 3 2 1 5 5 C 1.39738 * 133.59954 * 179.74178 * 4 3 2 6 6 C 1.36605 * 119.88325 * 180.02562 * 5 4 3 7 7 C 1.38776 * 120.67083 * 359.95419 * 6 5 4 8 8 C 1.37851 * 120.44970 * 0.02586 * 7 6 5 9 9 C 1.38830 * 119.69322 * 359.97438 * 8 7 6 10 10 N 1.36032 * 124.94915 * 179.84416 * 2 1 3 11 11 C 1.46500 * 126.35023 * 0.02562 * 10 2 1 12 12 C 1.52997 * 109.47473 * 269.68724 * 11 10 2 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99872 * 179.97438 * 14 13 12 16 16 O 1.21273 * 120.00093 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99944 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47324 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00237 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99945 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99810 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00234 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46956 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47004 * 119.99779 * 23 21 19 26 26 H 1.48499 * 109.46781 * 240.00012 * 23 21 19 27 27 H 1.08996 * 109.47597 * 270.15228 * 1 2 3 28 28 H 1.09001 * 109.47080 * 30.15517 * 1 2 3 29 29 H 1.08995 * 109.47176 * 150.15001 * 1 2 3 30 30 H 1.07995 * 120.05974 * 0.02562 * 5 4 3 31 31 H 1.08003 * 119.65986 * 179.97438 * 6 5 4 32 32 H 1.08001 * 119.77061 * 180.02562 * 7 6 5 33 33 H 1.08008 * 120.14820 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47129 * 149.68467 * 11 10 2 35 35 H 1.08998 * 109.46845 * 29.69274 * 11 10 2 36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 38 38 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 40 40 H 0.97005 * 120.00448 * 359.97438 * 14 13 12 41 41 H 1.08998 * 109.47224 * 300.00395 * 17 15 14 42 42 H 1.09002 * 109.47152 * 59.99840 * 17 15 14 43 43 H 0.97007 * 120.00127 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5620 0.7080 -0.0058 5 6 4.7586 1.4296 -0.0129 6 6 5.9531 0.7669 -0.0182 7 6 5.9930 -0.6203 -0.0155 8 6 4.8252 -1.3528 -0.0081 9 6 3.6018 -0.6965 -0.0027 10 7 2.2863 -1.1150 0.0030 11 6 1.8166 -2.5026 0.0063 12 6 1.6599 -2.9848 1.4498 13 6 1.1700 -4.4342 1.4531 14 7 1.0195 -4.8956 2.8354 15 6 0.5957 -6.1505 3.0845 16 8 0.3385 -6.8976 2.1645 17 6 0.4414 -6.6254 4.5064 18 16 -0.1398 -8.3395 4.5105 19 6 -0.2302 -8.6279 6.2463 20 1 0.0381 -7.8437 6.9387 21 6 -0.6464 -9.8629 6.7238 22 7 -0.9740 -10.8185 5.8800 23 14 -0.7430 -10.1685 8.5642 24 1 -0.3250 -8.9434 9.2919 25 1 -2.1385 -10.5139 8.9360 26 1 0.1585 -11.2913 8.9274 27 1 -0.3634 0.0027 1.0276 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 4.7392 2.5094 -0.0143 31 1 6.8758 1.3282 -0.0241 32 1 6.9455 -1.1294 -0.0193 33 1 4.8619 -2.4322 -0.0065 34 1 2.5406 -3.1325 -0.5106 35 1 0.8547 -2.5618 -0.5030 36 1 0.9359 -2.3549 1.9667 37 1 2.6219 -2.9256 1.9590 38 1 0.2081 -4.4938 0.9438 39 1 1.8943 -5.0637 0.9364 40 1 1.2248 -4.2979 3.5714 41 1 1.4033 -6.5662 5.0157 42 1 -0.2826 -5.9954 5.0233 43 1 -1.2645 -11.6818 6.2137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057346313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:07 Heat of formation + Delta-G solvation = 24.689419 kcal Electronic energy + Delta-G solvation = -24265.579111 eV Core-core repulsion = 20630.260340 eV Total energy + Delta-G solvation = -3635.318771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.54351 -39.30853 -37.86920 -36.28782 -34.35128 -32.46845 -32.05245 -31.61080 -30.39913 -29.06747 -27.89041 -25.91819 -25.42299 -22.66981 -22.45228 -22.19519 -20.67340 -20.11838 -17.91010 -17.74504 -17.47271 -16.44748 -16.05628 -15.91540 -15.83922 -15.66731 -14.83997 -14.83633 -14.48189 -14.21769 -14.00208 -13.64732 -13.53458 -13.30165 -13.24479 -13.14401 -12.87991 -12.58163 -12.25811 -12.19530 -11.98515 -11.71473 -11.68912 -11.40762 -11.10007 -11.06079 -10.80671 -10.72346 -10.24868 -9.84999 -9.52139 -9.12246 -9.02717 -8.62617 -8.40040 -8.28547 -6.54830 -6.25708 -3.96652 0.62667 1.19625 2.13879 2.41526 2.96238 2.99775 3.18882 3.25156 3.29536 3.56514 3.62398 3.77986 4.05272 4.09127 4.16493 4.45011 4.49908 4.65530 4.68802 4.73592 4.78459 4.90674 5.03451 5.04910 5.09273 5.09731 5.12273 5.25621 5.28557 5.40784 5.43957 5.55593 5.56863 5.75605 5.82060 5.83396 6.07904 6.11642 6.20217 6.21314 6.46268 6.55681 6.76903 7.55747 7.57063 7.57844 8.31569 8.50107 9.19903 10.81747 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.001764 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.926819 B =15865.703243 C =16273.414142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.285 3.715 3 N -0.497 5.497 4 C 0.047 3.953 5 C -0.067 4.067 6 C -0.129 4.129 7 C -0.105 4.105 8 C -0.108 4.108 9 C 0.047 3.953 10 N -0.487 5.487 11 C 0.113 3.887 12 C -0.148 4.148 13 C 0.126 3.874 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.280 1.280 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.497 24.070 -12.910 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 N -0.217 5.217 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.149 4.149 7 C -0.124 4.124 8 C -0.129 4.129 9 C -0.062 4.062 10 N -0.177 5.177 11 C -0.010 4.010 12 C -0.187 4.187 13 C 0.001 3.999 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.669 23.332 -14.489 28.800 hybrid contribution 0.658 0.052 2.638 2.719 sum 9.326 23.384 -11.852 27.825 Atomic orbital electron populations 1.20420 0.84236 1.04727 1.04436 1.23667 0.95811 0.80659 0.97901 1.70432 1.00929 1.27291 1.23091 1.19068 0.92073 0.90388 1.05627 1.20015 0.89218 0.99745 0.99710 1.20654 0.97456 0.94400 1.02383 1.20901 0.97303 0.94001 1.00221 1.19999 0.89113 0.99563 1.04226 1.18885 0.85360 0.95185 1.06722 1.45307 1.04583 1.07226 1.60578 1.21734 1.02262 0.79044 0.97955 1.22171 1.03362 0.96670 0.96468 1.21094 1.01672 0.92642 0.84535 1.45965 1.70955 1.14765 1.07824 1.20329 0.75676 0.80697 0.91411 1.90705 1.48045 1.54041 1.46241 1.23534 1.05212 1.06794 0.94915 1.85394 1.85855 1.02211 1.09919 1.22903 1.52374 1.01653 0.91451 0.90850 1.25000 0.94550 0.94988 0.99078 1.70024 1.41932 1.03940 1.34352 0.86108 0.77980 0.78373 0.82985 1.19611 1.20533 1.20542 0.89190 0.88548 0.90033 0.85493 0.85402 0.85267 0.85978 0.88606 0.88184 0.90329 0.90409 0.91182 0.91274 0.76724 0.89177 0.89165 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.17 36.01 0.37 -0.06 16 2 C 0.28 2.65 7.85 -154.83 -1.22 1.44 16 3 N -0.50 -5.96 11.27 -8.23 -0.09 -6.05 16 4 C 0.05 0.54 7.23 -84.70 -0.61 -0.07 16 5 C -0.07 -0.64 10.05 -39.61 -0.40 -1.04 16 6 C -0.13 -0.98 9.96 -39.97 -0.40 -1.38 16 7 C -0.10 -0.79 10.03 -39.52 -0.40 -1.18 16 8 C -0.11 -0.93 10.05 -39.50 -0.40 -1.32 16 9 C 0.05 0.48 6.87 -83.99 -0.58 -0.10 16 10 N -0.49 -4.23 2.81 -111.16 -0.31 -4.54 16 11 C 0.11 0.68 5.93 -4.04 -0.02 0.65 16 12 C -0.15 -0.98 5.65 -26.73 -0.15 -1.13 16 13 C 0.13 1.18 5.67 -4.04 -0.02 1.15 16 14 N -0.74 -8.88 5.56 -60.30 -0.33 -9.22 16 15 C 0.53 9.42 7.85 -10.98 -0.09 9.33 16 16 O -0.52 -11.23 15.86 5.56 0.09 -11.14 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.29 7.01 -51.93 -0.36 -0.07 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.43 6.99 -51.93 -0.36 0.07 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.40 3.73 8.47 -40.82 -0.35 3.39 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -37.07 382.73 -10.99 -48.06 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.11 Total: -0.79 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.49 Total: -9.29 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.01 Total: -44.96 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.07 -10.99 -48.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057346313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.754 kcal (2) G-P(sol) polarization free energy of solvation -37.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds