Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86793 * 119.99844 * 2 1 4 4 H 1.48502 * 109.47165 * 239.99457 * 3 2 1 5 5 H 1.48503 * 109.47548 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47017 * 120.00130 * 3 2 1 7 7 C 1.39919 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 175.56362 * 7 2 1 9 9 C 1.41129 * 119.99974 * 355.55883 * 7 2 1 10 10 C 1.40885 * 120.16212 * 214.78287 * 9 7 2 11 11 C 1.36355 * 119.83189 * 180.02562 * 10 9 7 12 12 C 1.39517 * 120.16459 * 0.02808 * 11 10 9 13 13 N 1.39119 * 119.83385 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00136 * 35.30208 * 13 12 11 15 15 O 1.21511 * 119.99602 * 355.70984 * 14 13 12 16 16 C 1.48283 * 120.00104 * 175.71450 * 14 13 12 17 17 C 1.41935 * 126.84801 * 179.97438 * 16 14 13 18 18 C 1.36704 * 103.81859 * 179.97438 * 17 16 14 19 19 C 1.47851 * 126.81469 * 179.97438 * 18 17 16 20 20 C 1.39552 * 120.14427 * 359.72657 * 19 18 17 21 21 C 1.37974 * 119.85299 * 179.71585 * 20 19 18 22 22 C 1.38359 * 120.14080 * 0.53948 * 21 20 19 23 23 C 1.38351 * 120.28834 * 359.75972 * 22 21 20 24 24 C 1.37953 * 120.14812 * 359.95741 * 23 22 21 25 25 O 1.34467 * 106.36783 * 0.02562 * 18 17 16 26 26 N 1.20874 * 111.74894 * 359.73148 * 25 18 17 27 27 C 1.39511 * 120.33208 * 0.24618 * 12 11 10 28 28 C 1.36362 * 120.16042 * 359.44576 * 27 12 11 29 29 H 0.96995 * 119.99278 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.08325 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.91764 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00021 * 215.30142 * 13 12 11 33 33 H 1.08002 * 128.09501 * 0.02562 * 17 16 14 34 34 H 1.08002 * 120.07727 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.92689 * 180.27458 * 21 20 19 36 36 H 1.08001 * 119.85321 * 179.73602 * 22 21 20 37 37 H 1.08002 * 119.92075 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.07504 * 180.02562 * 24 23 22 39 39 H 1.07995 * 119.92182 * 179.72823 * 27 12 11 40 40 H 1.08002 * 120.08473 * 180.25080 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2124 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0083 -1.2118 0.0005 8 1 3.0859 -1.2132 -0.0718 9 6 1.3058 -2.4321 0.0957 10 6 1.8652 -3.5180 0.7978 11 6 1.1808 -4.6941 0.8851 12 6 -0.0701 -4.8239 0.2808 13 7 -0.7621 -6.0272 0.3738 14 6 -0.6806 -6.7663 1.4978 15 8 0.0577 -6.4218 2.3993 16 6 -1.4919 -8.0000 1.6344 17 6 -1.5192 -8.8821 2.7460 18 6 -2.4144 -9.8466 2.3755 19 6 -2.8269 -11.0241 3.1688 20 6 -2.2831 -11.2412 4.4355 21 6 -2.6767 -12.3389 5.1730 22 6 -3.6001 -13.2293 4.6546 23 6 -4.1384 -13.0231 3.3969 24 6 -3.7576 -11.9265 2.6516 25 8 -2.8444 -9.5124 1.1461 26 7 -2.3307 -8.4908 0.7543 27 6 -0.6279 -3.7548 -0.4209 28 6 0.0420 -2.5706 -0.5113 29 1 -0.4849 0.8401 -0.0004 30 1 2.8335 -3.4191 1.2656 31 1 1.6085 -5.5276 1.4225 32 1 -1.3032 -6.3342 -0.3704 33 1 -0.9634 -8.8083 3.6690 34 1 -1.5588 -10.5494 4.8395 35 1 -2.2600 -12.5056 6.1553 36 1 -3.9018 -14.0893 5.2342 37 1 -4.8584 -13.7222 2.9978 38 1 -4.1789 -11.7664 1.6700 39 1 -1.5946 -3.8640 -0.8897 40 1 -0.3927 -1.7425 -1.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057657641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = 77.761570 kcal Electronic energy + Delta-G solvation = -25710.783947 eV Core-core repulsion = 21844.603943 eV Total energy + Delta-G solvation = -3866.180003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.110 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.17318 -39.69790 -39.49473 -37.31649 -34.59246 -34.24604 -33.54295 -32.83002 -31.41475 -29.89876 -29.61386 -28.97337 -25.85658 -24.24070 -24.06608 -22.87013 -22.16925 -21.48830 -20.70719 -19.58405 -18.56097 -17.94106 -17.37323 -16.92698 -16.70702 -16.34919 -15.53585 -15.27635 -15.19083 -14.65605 -14.36342 -14.03062 -13.92584 -13.74090 -13.58773 -13.39107 -13.07033 -12.69751 -12.18519 -12.03655 -11.76091 -11.66612 -11.48672 -11.40872 -11.18946 -11.09265 -10.78697 -10.65335 -10.51971 -10.20840 -9.62354 -9.52517 -9.43302 -9.28740 -8.96691 -8.73852 -7.59401 -6.92860 -6.65581 -4.38214 0.23275 0.93276 1.19950 1.82496 2.58511 2.64254 3.05719 3.07845 3.09179 3.12442 3.24889 3.38290 3.53766 3.91063 3.95478 4.24815 4.46275 4.51712 4.65426 4.66765 4.79765 4.89424 4.96927 5.14245 5.23270 5.42392 5.55222 5.60896 5.67875 5.96659 5.98025 6.03173 6.16553 6.38196 6.43819 6.66199 6.84895 7.01670 7.13763 7.24200 7.59220 7.63601 7.74263 7.87094 8.01874 8.17479 8.26634 8.51157 8.62280 8.88400 8.94585 10.25261 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.038396 B = 0.001847 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.072855 B =15155.764304 C =15505.431370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.082 4.082 12 C -0.005 4.005 13 N -0.629 5.629 14 C 0.578 3.422 15 O -0.513 6.513 16 C -0.010 4.010 17 C -0.164 4.164 18 C 0.002 3.998 19 C -0.019 4.019 20 C -0.089 4.089 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.119 4.119 24 C -0.094 4.094 25 O 0.126 5.874 26 N -0.331 5.331 27 C -0.115 4.115 28 C -0.141 4.141 29 H 0.279 0.721 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.402 0.598 33 H 0.183 0.817 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 -22.690 6.093 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.102 4.102 12 C -0.097 4.097 13 N -0.271 5.271 14 C 0.362 3.638 15 O -0.387 6.387 16 C -0.169 4.169 17 C -0.186 4.186 18 C -0.061 4.061 19 C -0.021 4.021 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.113 4.113 25 O 0.050 5.950 26 N -0.032 5.032 27 C -0.135 4.135 28 C -0.161 4.161 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.236 0.764 33 H 0.201 0.799 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.111 0.889 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.679 -21.779 5.506 24.082 hybrid contribution 0.276 0.569 0.459 0.781 sum -8.404 -21.210 5.965 23.581 Atomic orbital electron populations 1.69752 1.07324 1.28953 1.37580 1.25911 0.94969 1.01265 0.92497 0.86221 0.79786 0.79969 0.79812 1.19003 1.20395 1.19046 1.19491 0.94787 0.90190 1.44451 0.90501 1.17754 0.92242 0.92022 0.88022 1.20798 1.01307 0.94841 1.05617 1.20402 0.92621 0.97905 0.99303 1.17249 0.94448 0.85490 1.12520 1.42797 1.47847 1.20946 1.15494 1.16868 0.82279 0.81514 0.83149 1.90793 1.38299 1.69444 1.40174 1.23596 1.00161 1.00034 0.93106 1.22612 1.01299 0.93341 1.01307 1.22430 0.98722 0.97950 0.86950 1.17590 0.99256 0.91737 0.93483 1.21184 0.99122 0.97955 0.92544 1.21108 0.97892 0.94361 1.00140 1.21361 0.96383 0.99141 0.95721 1.21123 1.00233 0.97577 0.94723 1.21325 0.95988 0.93691 1.00268 1.84841 1.51725 1.30831 1.27627 1.74152 1.09758 0.97322 1.21921 1.20325 0.98390 0.92991 1.01786 1.21197 0.97292 0.95504 1.02143 0.90980 0.88392 0.87402 0.76351 0.79929 0.84997 0.85131 0.85563 0.85289 0.84905 0.88910 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.03 10.60 55.55 0.59 -20.44 16 2 C 0.07 1.74 5.42 -17.33 -0.09 1.65 16 3 Si 0.92 18.94 29.56 -169.99 -5.03 13.92 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.20 9.02 -37.86 -0.34 -12.54 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.75 5.55 -106.80 -0.59 2.15 16 10 C -0.21 -5.22 9.74 -39.26 -0.38 -5.60 16 11 C -0.08 -2.00 8.61 -39.78 -0.34 -2.34 16 12 C -0.01 -0.11 6.30 -83.60 -0.53 -0.64 16 13 N -0.63 -12.13 5.30 -10.47 -0.06 -12.19 16 14 C 0.58 11.06 7.68 -12.13 -0.09 10.97 16 15 O -0.51 -11.27 14.36 5.36 0.08 -11.19 16 16 C -0.01 -0.16 7.18 -82.63 -0.59 -0.76 16 17 C -0.16 -2.08 10.34 -38.72 -0.40 -2.48 16 18 C 0.00 0.03 7.15 -36.20 -0.26 -0.23 16 19 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 20 C -0.09 -0.67 9.58 -39.19 -0.38 -1.05 16 21 C -0.12 -0.71 10.03 -39.63 -0.40 -1.10 16 22 C -0.11 -0.60 10.04 -39.50 -0.40 -0.99 16 23 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 24 C -0.09 -0.70 9.73 -39.19 -0.38 -1.08 16 25 O 0.13 1.56 11.01 16.04 0.18 1.73 16 26 N -0.33 -4.80 11.82 33.35 0.39 -4.41 16 27 C -0.11 -2.68 9.90 -39.78 -0.39 -3.07 16 28 C -0.14 -3.66 8.61 -39.26 -0.34 -4.00 16 29 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 30 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.11 2.55 6.22 -52.48 -0.33 2.23 16 32 H 0.40 6.68 8.57 -40.82 -0.35 6.33 16 33 H 0.18 1.97 7.46 -52.49 -0.39 1.58 16 34 H 0.13 0.85 7.15 -52.49 -0.38 0.47 16 35 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.85 7.96 -52.48 -0.42 0.43 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -30.55 354.70 -9.27 -39.81 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -3.84 Total: 10.41 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -6.92 Total: -23.00 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.93 Total: -37.03 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.25 Total: -9.46 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.55 -9.27 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057657641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.577 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds