Wall clock time and date at job start Tue Mar 31 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37998 * 119.95425 * 2 1 4 4 C 1.39297 * 119.90399 * 180.02562 * 3 2 1 5 5 C 1.48453 * 120.08909 * 179.97438 * 4 3 2 6 6 N 1.34052 * 126.67657 * 359.68081 * 5 4 3 7 7 N 1.28986 * 107.27035 * 179.83876 * 6 5 4 8 8 N 1.28727 * 108.94135 * 0.43682 * 7 6 5 9 9 C 1.46509 * 125.33949 * 179.72563 * 8 7 6 10 10 C 1.50695 * 109.46807 * 269.99584 * 9 8 7 11 11 O 1.21281 * 120.00624 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99836 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00088 * 0.02562 * 12 10 9 14 14 C 1.46499 * 120.00496 * 179.97438 * 12 10 9 15 15 C 1.50706 * 109.46940 * 89.99997 * 14 12 10 16 16 H 1.08004 * 119.99828 * 0.02562 * 15 14 12 17 17 C 1.37873 * 119.99851 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99836 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00162 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47341 * 89.99892 * 19 17 15 21 21 H 1.48506 * 109.46880 * 209.99786 * 19 17 15 22 22 H 1.48497 * 109.47307 * 329.99749 * 19 17 15 23 23 N 1.28875 * 109.32142 * 359.71991 * 8 7 6 24 24 C 1.39331 * 119.82218 * 359.97438 * 4 3 2 25 25 C 1.37958 * 119.90278 * 0.02791 * 24 4 3 26 26 C 1.38525 * 119.95230 * 180.02562 * 2 1 3 27 27 F 1.35098 * 119.90718 * 359.72394 * 26 2 1 28 28 H 1.09002 * 109.47372 * 269.97822 * 1 2 3 29 29 H 1.08998 * 109.47046 * 29.97581 * 1 2 3 30 30 H 1.09004 * 109.47556 * 149.97583 * 1 2 3 31 31 H 1.08000 * 120.04794 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.46885 * 29.99872 * 9 8 7 33 33 H 1.09000 * 109.47045 * 149.99718 * 9 8 7 34 34 H 1.09008 * 109.47286 * 89.99782 * 13 12 10 35 35 H 1.08996 * 109.47550 * 209.99936 * 13 12 10 36 36 H 1.09005 * 109.47235 * 329.99874 * 13 12 10 37 37 H 1.08992 * 109.47560 * 210.00467 * 14 12 10 38 38 H 1.09003 * 109.47286 * 330.00967 * 14 12 10 39 39 H 0.97008 * 120.00275 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.05026 * 179.97438 * 24 4 3 41 41 H 1.08008 * 119.95277 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1956 0.0000 4 6 3.5890 1.1944 -0.0005 5 6 4.3344 2.4783 -0.0011 6 7 3.8066 3.7105 -0.0072 7 7 4.7881 4.5474 -0.0019 8 7 5.8961 3.8921 -0.0021 9 6 7.2339 4.4894 -0.0028 10 6 7.6920 4.6937 -1.4238 11 8 6.9719 4.3726 -2.3453 12 7 8.9017 5.2342 -1.6707 13 6 9.7714 5.6227 -0.5576 14 6 9.3474 5.4324 -3.0521 15 6 8.9204 6.7975 -3.5267 16 1 8.3722 7.4521 -2.8653 17 6 9.2295 7.2107 -4.8053 18 7 8.8573 8.4022 -5.2193 19 14 10.1771 6.0782 -5.9493 20 1 9.2226 5.2396 -6.7180 21 1 10.9898 6.8914 -6.8893 22 1 11.0722 5.2033 -5.1503 23 7 5.6439 2.6283 -0.0016 24 6 4.2808 -0.0150 -0.0005 25 6 3.5843 -1.2058 -0.0006 26 6 2.1986 -1.2002 -0.0005 27 9 1.5202 -2.3686 0.0046 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6560 2.1310 0.0004 32 1 7.2030 5.4503 0.5108 33 1 7.9286 3.8249 0.5110 34 1 10.4064 4.7807 -0.2816 35 1 10.3948 6.4640 -0.8601 36 1 9.1601 5.9122 0.2972 37 1 10.4336 5.3551 -3.0980 38 1 8.9015 4.6699 -3.6907 39 1 9.0745 8.6928 -6.1190 40 1 5.3608 -0.0202 -0.0014 41 1 4.1197 -2.1438 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058192586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:57 Heat of formation + Delta-G solvation = 83.073423 kcal Electronic energy + Delta-G solvation = -27141.528945 eV Core-core repulsion = 22974.821469 eV Total energy + Delta-G solvation = -4166.707476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.21561 -44.26397 -39.56918 -39.33597 -35.45503 -34.94537 -33.83305 -32.82367 -32.68397 -31.20334 -29.52412 -28.01352 -27.36226 -26.16720 -24.54188 -23.80203 -22.71561 -22.03229 -21.20766 -19.30930 -17.97303 -17.79514 -17.40755 -17.11768 -16.75543 -16.27384 -16.14408 -15.95826 -15.38037 -15.14654 -14.53284 -14.18470 -13.89291 -13.75740 -13.67202 -13.46709 -13.36619 -13.21491 -12.98048 -12.55783 -12.51125 -12.43046 -12.27655 -12.18749 -11.89128 -11.66406 -11.37672 -11.11979 -11.06946 -10.93628 -10.71706 -10.64142 -10.28296 -9.69923 -9.45367 -9.24389 -8.69273 -8.66277 -8.03582 -6.18693 -4.19436 0.43024 0.89833 1.26095 1.76248 2.26405 2.80266 3.21193 3.26634 3.29450 3.37361 3.41306 3.60335 3.90849 4.07917 4.29942 4.39051 4.43005 4.46975 4.64559 4.72202 4.86427 5.00453 5.13881 5.16443 5.27496 5.28630 5.34114 5.48635 5.57859 5.63627 5.71500 5.75462 5.81374 5.91880 5.95561 6.07485 6.12157 6.45921 6.50216 6.73450 6.99607 7.45850 7.81943 8.29508 8.34011 8.50372 8.83311 9.39726 10.94325 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.002333 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.791103 B =11997.740486 C =12355.248805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.009 4.009 5 C 0.201 3.799 6 N -0.275 5.275 7 N -0.039 5.039 8 N -0.115 5.115 9 C 0.107 3.893 10 C 0.497 3.503 11 O -0.519 6.519 12 N -0.586 5.586 13 C 0.074 3.926 14 C 0.217 3.783 15 C -0.536 4.536 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.893 5.893 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.266 1.266 23 N -0.288 5.288 24 C -0.059 4.059 25 C -0.151 4.151 26 C 0.109 3.891 27 F -0.136 7.136 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.266 0.734 40 H 0.144 0.856 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 -16.787 16.377 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.072 4.072 4 C -0.012 4.012 5 C -0.078 4.078 6 N -0.146 5.146 7 N -0.032 5.032 8 N -0.025 5.025 9 C -0.017 4.017 10 C 0.279 3.721 11 O -0.394 6.394 12 N -0.319 5.319 13 C -0.070 4.070 14 C 0.097 3.903 15 C -0.574 4.574 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.190 1.190 23 N -0.139 5.139 24 C -0.079 4.079 25 C -0.170 4.170 26 C 0.089 3.911 27 F -0.115 7.115 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.161 0.839 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.543 -16.126 15.701 23.738 hybrid contribution 0.588 -0.926 -0.763 1.336 sum -6.955 -17.053 14.938 23.713 Atomic orbital electron populations 1.20740 0.89582 1.03690 1.03032 1.19832 0.97372 0.91327 1.03660 1.20971 0.92232 0.98115 0.95925 1.17241 0.91978 0.87423 1.04570 1.23363 0.86746 0.94069 1.03629 1.75984 1.21989 0.98265 1.18373 1.78968 0.87950 1.22056 1.14252 1.49385 1.08847 1.01413 1.42900 1.22274 0.77165 1.02097 1.00128 1.19908 0.82996 0.80039 0.89132 1.90799 1.53096 1.50481 1.45054 1.47789 1.15284 1.59439 1.09345 1.21839 0.95011 1.01178 0.88929 1.19775 0.95046 0.98423 0.77054 1.21264 1.37429 0.98996 0.99699 0.90595 1.24852 0.95396 0.95029 0.97603 1.69889 1.46066 1.18564 1.18534 0.86857 0.80441 0.81033 0.81387 1.19868 1.20882 1.19032 1.74791 1.17358 1.00265 1.21452 1.21042 1.00955 0.89937 0.95996 1.21038 0.92034 0.99662 1.04227 1.17682 0.90003 0.80984 1.02478 1.91489 1.80201 1.46077 1.93684 0.90592 0.90507 0.91039 0.83566 0.83676 0.84091 0.92767 0.89599 0.92032 0.94575 0.94403 0.92376 0.83863 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.83 36.00 0.35 -0.47 16 2 C -0.12 -1.15 5.88 -104.61 -0.62 -1.77 16 3 C -0.05 -0.56 9.35 -39.28 -0.37 -0.93 16 4 C -0.01 -0.11 5.88 -104.89 -0.62 -0.72 16 5 C 0.20 3.08 7.94 -156.30 -1.24 1.83 16 6 N -0.27 -4.62 12.23 32.15 0.39 -4.22 16 7 N -0.04 -0.69 13.23 60.35 0.80 0.11 16 8 N -0.11 -1.81 3.48 -11.67 -0.04 -1.86 16 9 C 0.11 1.36 5.63 -5.19 -0.03 1.33 16 10 C 0.50 9.21 7.74 -10.99 -0.09 9.13 16 11 O -0.52 -12.52 16.01 5.56 0.09 -12.43 16 12 N -0.59 -10.70 2.86 -182.95 -0.52 -11.22 16 13 C 0.07 0.89 10.24 59.85 0.61 1.50 16 14 C 0.22 4.98 4.23 -5.19 -0.02 4.96 16 15 C -0.54 -14.79 9.94 -34.44 -0.34 -15.13 16 16 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 19 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 23 N -0.29 -4.50 11.85 32.17 0.38 -4.12 16 24 C -0.06 -0.62 9.70 -39.28 -0.38 -1.00 16 25 C -0.15 -1.37 10.01 -39.56 -0.40 -1.77 16 26 C 0.11 1.06 7.24 -39.35 -0.29 0.78 16 27 F -0.14 -1.35 16.46 2.25 0.04 -1.31 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.07 0.49 7.64 -51.93 -0.40 0.10 16 31 H 0.15 1.48 7.88 -52.49 -0.41 1.07 16 32 H 0.15 1.38 7.40 -51.93 -0.38 0.99 16 33 H 0.14 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.06 0.53 6.44 -51.93 -0.33 0.19 16 37 H 0.04 0.77 7.13 -51.93 -0.37 0.40 16 38 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.14 1.38 7.88 -52.49 -0.41 0.97 16 41 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -36.66 363.57 -5.58 -42.23 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.79 Total: -2.50 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.51 Total: -0.24 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 1.78 Total: -47.55 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.66 -5.58 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058192586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.307 kcal (2) G-P(sol) polarization free energy of solvation -36.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds