Wall clock time and date at job start Tue Mar 31 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34770 * 116.99690 * 2 1 4 4 O 1.21522 * 120.00118 * 359.97438 * 3 2 1 5 5 C 1.47242 * 119.99837 * 180.02562 * 3 2 1 6 6 C 1.38286 * 126.47445 * 270.02520 * 5 3 2 7 7 C 1.50706 * 125.80532 * 359.94429 * 6 5 3 8 8 N 1.34223 * 108.38998 * 180.20724 * 6 5 3 9 9 H 0.97003 * 125.38427 * 179.77482 * 8 6 5 10 10 C 1.37786 * 109.23318 * 359.62708 * 8 6 5 11 11 C 1.46826 * 125.84110 * 180.15003 * 10 8 6 12 12 O 1.21674 * 119.99935 * 153.60367 * 11 10 8 13 13 N 1.34776 * 119.99928 * 333.60823 * 11 10 8 14 14 C 1.46502 * 119.99731 * 5.63360 * 13 11 10 15 15 C 1.50698 * 109.47062 * 96.48184 * 14 13 11 16 16 H 1.08001 * 120.00263 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99935 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99759 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46911 * 60.00664 * 19 17 15 21 21 H 1.48502 * 109.46906 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47299 * 300.00090 * 19 17 15 23 23 C 1.46493 * 120.00032 * 185.63631 * 13 11 10 24 24 C 1.53004 * 109.47429 * 93.05027 * 23 13 11 25 25 C 1.47199 * 109.47312 * 180.02562 * 24 23 13 26 26 N 9.05746 * 152.86974 * 88.24073 * 5 1 2 27 27 C 1.36331 * 108.32330 * 0.37530 * 10 8 6 28 28 C 1.50698 * 126.49871 * 179.79946 * 27 10 8 29 29 H 1.09004 * 109.46432 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46777 * 299.99524 * 1 2 3 31 31 H 1.08993 * 109.47238 * 60.00110 * 1 2 3 32 32 H 1.08993 * 109.47447 * 90.00113 * 7 6 5 33 33 H 1.09003 * 109.47045 * 329.99466 * 7 6 5 34 34 H 1.09004 * 109.46572 * 209.99944 * 7 6 5 35 35 H 1.09003 * 109.46592 * 216.48355 * 14 13 11 36 36 H 1.09000 * 109.47499 * 336.47546 * 14 13 11 37 37 H 0.96998 * 120.00030 * 180.02562 * 18 17 15 38 38 H 1.09008 * 109.47350 * 213.04498 * 23 13 11 39 39 H 1.08996 * 109.47244 * 333.04700 * 23 13 11 40 40 H 1.09008 * 109.46423 * 300.00038 * 24 23 13 41 41 H 1.08996 * 109.47175 * 59.99630 * 24 23 13 42 42 H 1.09000 * 109.47179 * 269.99905 * 28 27 10 43 43 H 1.08998 * 109.47191 * 29.99882 * 28 27 10 44 44 H 1.09005 * 109.47239 * 149.99862 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5342 1.2779 -0.0006 6 6 4.3556 1.3203 1.1111 7 6 3.8981 1.2965 2.5468 8 7 5.6294 1.3919 0.6940 9 1 6.4078 1.4365 1.2711 10 6 5.6567 1.3889 -0.6836 11 6 6.8620 1.4521 -1.5198 12 8 6.8504 0.9785 -2.6405 13 7 7.9811 2.0345 -1.0458 14 6 8.0354 2.4938 0.3443 15 6 8.6931 1.4392 1.1965 16 1 9.0360 0.5186 0.7476 17 6 8.8572 1.6495 2.5493 18 7 8.4392 2.7701 3.0959 19 14 9.6718 0.3418 3.6057 20 1 11.0501 0.0941 3.1114 21 1 9.7281 0.8080 5.0145 22 1 8.8855 -0.9156 3.5308 23 6 9.1432 2.2084 -1.9206 24 6 9.0876 3.5909 -2.5739 25 6 10.2550 3.7653 -3.4534 26 7 11.1579 3.8979 -4.1301 27 6 4.3729 1.3222 -1.1376 28 6 3.9317 1.2993 -2.5784 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.8408 0.2646 2.8929 33 1 2.9146 1.7603 2.6225 34 1 4.6081 1.8477 3.1635 35 1 8.6120 3.4173 0.3995 36 1 7.0236 2.6751 0.7069 37 1 8.5550 2.9182 4.0475 38 1 10.0570 2.1210 -1.3327 39 1 9.1339 1.4404 -2.6940 40 1 8.1738 3.6783 -3.1618 41 1 9.0969 4.3588 -1.8005 42 1 3.7720 2.3201 -2.9257 43 1 4.7017 0.8249 -3.1867 44 1 3.0023 0.7364 -2.6649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:33 Heat of formation + Delta-G solvation = -49.031889 kcal Electronic energy + Delta-G solvation = -29077.025147 eV Core-core repulsion = 24995.756709 eV Total energy + Delta-G solvation = -4081.268438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50058 -39.89253 -38.79977 -36.70204 -36.17689 -35.56528 -33.26674 -32.63189 -31.94359 -30.75742 -28.38900 -27.76630 -27.17169 -26.24723 -24.21170 -23.29923 -22.65615 -20.18538 -19.69397 -18.69629 -17.70315 -17.26252 -16.99131 -16.80268 -16.25635 -15.85165 -15.61179 -15.29030 -14.83372 -14.76765 -14.35620 -14.12534 -13.57741 -13.35544 -13.31332 -13.02781 -12.92425 -12.79316 -12.63144 -12.54024 -12.36576 -12.24454 -12.15270 -12.04927 -11.90289 -11.75155 -11.44136 -11.29406 -11.23318 -10.94171 -10.75282 -10.71399 -10.46733 -10.44944 -10.11965 -9.45555 -8.95383 -8.47190 -8.17552 -7.71659 -6.55760 -4.69085 1.94579 2.30943 2.36755 2.81010 2.91136 3.03503 3.10234 3.10685 3.13519 3.43497 3.55088 3.89522 4.06531 4.30664 4.75450 4.97039 5.03710 5.08268 5.13873 5.16597 5.25947 5.31356 5.36392 5.46202 5.60577 5.61693 5.66655 5.67523 5.97748 6.02712 6.04172 6.07633 6.17573 6.27898 6.30741 6.41682 6.59149 6.77208 6.93220 7.08820 7.22366 7.40022 7.60299 7.67040 7.86854 7.92718 7.96136 8.42518 8.66600 9.02875 10.47980 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004574 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.199772 B = 6120.153078 C = 8577.396206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.352 6.352 3 C 0.556 3.444 4 O -0.505 6.505 5 C -0.228 4.228 6 C 0.101 3.899 7 C -0.097 4.097 8 N -0.498 5.498 9 H 0.451 0.549 10 C -0.036 4.036 11 C 0.591 3.409 12 O -0.549 6.549 13 N -0.594 5.594 14 C 0.214 3.786 15 C -0.562 4.562 16 H 0.069 0.931 17 C 0.068 3.932 18 N -0.882 5.882 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.127 3.873 24 C -0.046 4.046 25 C 0.221 3.779 26 N -0.448 5.448 27 C -0.050 4.050 28 C -0.093 4.093 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.273 0.727 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -2.506 -1.391 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C 0.399 3.601 4 O -0.393 6.393 5 C -0.236 4.236 6 C -0.024 4.024 7 C -0.155 4.155 8 N -0.102 5.102 9 H 0.304 0.696 10 C -0.149 4.149 11 C 0.381 3.619 12 O -0.428 6.428 13 N -0.324 5.324 14 C 0.093 3.907 15 C -0.601 4.601 16 H 0.087 0.913 17 C -0.137 4.137 18 N -0.518 5.518 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.001 3.999 24 C -0.087 4.087 25 C -0.097 4.097 26 N -0.126 5.126 27 C -0.057 4.057 28 C -0.150 4.150 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.231 -2.122 -2.706 9.851 hybrid contribution 0.279 -0.477 1.471 1.571 sum -8.952 -2.599 -1.235 9.403 Atomic orbital electron populations 1.23243 0.77060 1.03412 1.02373 1.86727 1.22656 1.33408 1.84079 1.20411 0.88002 0.80923 0.70801 1.90814 1.66966 1.36268 1.45225 1.18080 0.88632 1.23163 0.93757 1.20546 0.84027 1.02576 0.95225 1.20515 1.02341 1.03495 0.89131 1.43179 1.08685 1.51149 1.07214 0.69570 1.19620 0.94561 1.18224 0.82476 1.17079 0.81668 0.77773 0.85427 1.90723 1.83584 1.48377 1.20159 1.48032 1.12074 1.58459 1.13793 1.19932 0.98965 0.96519 0.75263 1.21572 1.41801 1.03839 0.92839 0.91269 1.25027 0.94888 0.95895 0.97922 1.69905 1.44802 1.23854 1.13243 0.86522 0.80517 0.81416 0.79121 1.19687 1.20800 1.19758 1.21137 0.89989 0.94187 0.94540 1.19768 0.90967 1.01512 0.96482 1.29062 0.94223 0.92920 0.93483 1.81189 1.11462 1.09026 1.10910 1.19279 0.89623 1.02170 0.94641 1.20385 1.01674 1.01990 0.90995 0.88322 0.92047 0.92042 0.90016 0.90259 0.89916 0.93602 0.93488 0.91736 0.89072 0.89392 0.87267 0.86943 0.91638 0.89186 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.93 10.58 -40.68 -0.43 -5.36 16 3 C 0.56 9.00 7.14 34.39 0.25 9.24 16 4 O -0.51 -9.01 16.90 -19.28 -0.33 -9.33 16 5 C -0.23 -3.93 6.01 -105.03 -0.63 -4.56 16 6 C 0.10 1.69 7.21 -81.53 -0.59 1.11 16 7 C -0.10 -1.30 10.24 36.01 0.37 -0.93 16 8 N -0.50 -9.10 4.69 -5.60 -0.03 -9.12 16 9 H 0.45 8.75 4.82 -40.82 -0.20 8.56 16 10 C -0.04 -0.67 6.37 -82.40 -0.52 -1.19 16 11 C 0.59 11.15 7.53 -12.79 -0.10 11.05 16 12 O -0.55 -10.86 14.53 5.21 0.08 -10.78 16 13 N -0.59 -10.53 2.46 -176.55 -0.43 -10.96 16 14 C 0.21 4.22 4.75 -5.19 -0.02 4.20 16 15 C -0.56 -12.29 7.96 -34.44 -0.27 -12.56 16 16 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.07 1.53 5.42 -17.82 -0.10 1.43 16 18 N -0.88 -20.51 13.29 55.43 0.74 -19.77 16 19 Si 0.90 18.06 29.54 -169.99 -5.02 13.04 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 C 0.13 1.90 5.45 -4.04 -0.02 1.88 16 24 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 25 C 0.22 3.07 15.43 -20.76 -0.32 2.75 16 26 N -0.45 -7.29 18.54 42.16 0.78 -6.51 16 27 C -0.05 -0.88 6.20 -104.12 -0.65 -1.52 16 28 C -0.09 -1.43 9.93 36.00 0.36 -1.08 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.94 8.12 -51.93 -0.42 0.51 16 36 H 0.05 0.97 4.44 -51.93 -0.23 0.74 16 37 H 0.27 6.13 8.31 -40.82 -0.34 5.80 16 38 H 0.09 1.37 8.10 -51.92 -0.42 0.95 16 39 H 0.09 1.35 7.26 -51.93 -0.38 0.97 16 40 H 0.11 1.26 8.14 -51.92 -0.42 0.83 16 41 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.44 6.30 -51.93 -0.33 1.11 16 44 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -27.51 384.31 -5.94 -33.45 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.73 Total: 9.10 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -1.36 Total: 10.45 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 1.06 Total: -46.37 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.68 Total: -25.48 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.51 -5.94 -33.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.577 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds