Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46492 * 120.00154 * 2 1 4 4 C 1.50693 * 109.47714 * 270.00707 * 3 2 1 5 5 H 1.08000 * 119.99706 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00227 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99829 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00104 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47082 * 89.99953 * 8 6 4 10 10 H 1.48503 * 109.47090 * 210.00078 * 8 6 4 11 11 H 1.48505 * 109.46996 * 330.00385 * 8 6 4 12 12 C 1.34781 * 119.99704 * 180.02562 * 2 1 3 13 13 O 1.21284 * 119.99439 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00310 * 359.97438 * 12 2 1 15 15 N 1.46893 * 109.47049 * 179.97438 * 14 12 2 16 16 C 1.46897 * 111.00028 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47355 * 60.00011 * 16 15 14 18 18 C 1.53002 * 109.47151 * 300.00176 * 16 15 14 19 19 C 1.50699 * 109.47425 * 180.02562 * 16 15 14 20 20 C 1.38247 * 119.92634 * 0.02562 * 19 16 15 21 21 C 1.38240 * 120.14459 * 179.75199 * 20 19 16 22 22 C 1.38552 * 120.02633 * 0.42901 * 21 20 19 23 23 C 1.39265 * 119.82706 * 359.57585 * 22 21 20 24 24 C 1.38231 * 119.92969 * 180.02562 * 19 16 15 25 25 O 1.36496 * 108.64230 * 180.24572 * 23 22 21 26 26 C 1.43981 * 105.48444 * 342.72036 * 25 23 22 27 27 O 1.36505 * 131.53353 * 179.87931 * 22 21 20 28 28 H 1.09006 * 109.46686 * 269.99725 * 1 2 3 29 29 H 1.09000 * 109.47043 * 29.99241 * 1 2 3 30 30 H 1.08998 * 109.47192 * 149.99748 * 1 2 3 31 31 H 1.09010 * 109.46914 * 30.00650 * 3 2 1 32 32 H 1.09003 * 109.47338 * 150.00182 * 3 2 1 33 33 H 0.96998 * 119.99835 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46770 * 60.00254 * 14 12 2 35 35 H 1.08999 * 109.46819 * 300.00348 * 14 12 2 36 36 H 1.00903 * 111.00587 * 303.95795 * 15 14 12 37 37 H 1.09002 * 109.47217 * 180.02562 * 17 16 15 38 38 H 1.08999 * 109.46994 * 300.00641 * 17 16 15 39 39 H 1.08998 * 109.46816 * 60.00191 * 17 16 15 40 40 H 1.09007 * 109.47071 * 300.00210 * 18 16 15 41 41 H 1.08999 * 109.47241 * 59.99339 * 18 16 15 42 42 H 1.08997 * 109.47669 * 179.97438 * 18 16 15 43 43 H 1.07994 * 119.93290 * 0.02562 * 20 19 16 44 44 H 1.07997 * 119.99327 * 180.33354 * 21 20 19 45 45 H 1.08003 * 119.98943 * 0.02562 * 24 19 16 46 46 H 1.09007 * 110.56955 * 268.54960 * 26 25 23 47 47 H 1.09003 * 110.57719 * 145.67764 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0980 1.0960 -2.2416 6 6 3.1269 2.8776 -1.6726 7 7 3.3464 3.2571 -2.9125 8 14 3.7340 3.9286 -0.2527 9 1 5.1071 3.5067 0.1238 10 1 3.7499 5.3554 -0.6645 11 1 2.8275 3.7594 0.9113 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4724 -0.0005 15 7 2.3399 -3.5889 -0.0018 16 6 1.6397 -4.8802 -0.0024 17 6 0.7620 -4.9838 -1.2513 18 6 0.7630 -4.9856 1.2471 19 6 2.6491 -5.9991 -0.0030 20 6 4.0008 -5.7087 -0.0024 21 6 4.9307 -6.7315 0.0022 22 6 4.5095 -8.0515 -0.0028 23 6 3.1479 -8.3441 -0.0035 24 6 2.2217 -7.3137 -0.0042 25 8 2.9930 -9.7002 -0.0032 26 6 4.2660 -10.2326 -0.4144 27 8 5.2077 -9.2244 -0.0022 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6084 2.0283 0.5140 32 1 3.1500 1.1383 0.5138 33 1 3.8233 4.0830 -3.0897 34 1 0.7584 -2.5299 -0.8903 35 1 0.7590 -2.5303 0.8897 36 1 2.9743 -3.5215 -0.7835 37 1 0.2420 -5.9419 -1.2515 38 1 0.0319 -4.1745 -1.2504 39 1 1.3865 -4.9088 -2.1415 40 1 1.3883 -4.9118 2.1370 41 1 0.0329 -4.1763 1.2481 42 1 0.2431 -5.9436 1.2465 43 1 4.3310 -4.6804 -0.0010 44 1 5.9859 -6.5018 0.0081 45 1 1.1651 -7.5378 -0.0052 46 1 4.2948 -10.3641 -1.4961 47 1 4.4686 -11.1760 0.0926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058415331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = -50.068305 kcal Electronic energy + Delta-G solvation = -28773.746477 eV Core-core repulsion = 24730.547529 eV Total energy + Delta-G solvation = -4043.198948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.37966 -39.83750 -38.74749 -36.55692 -36.43605 -34.88079 -32.61384 -32.02650 -30.49285 -29.36660 -28.74059 -27.51996 -26.67781 -26.03087 -25.42446 -23.33537 -22.95905 -21.99116 -19.95322 -18.72867 -18.05812 -17.79330 -17.53637 -16.96984 -16.74044 -16.18623 -15.84798 -15.30649 -14.87566 -14.74975 -14.64830 -14.27764 -14.07081 -13.96368 -13.75356 -13.39892 -13.22389 -13.18538 -13.01923 -12.79197 -12.45919 -12.39414 -12.35665 -12.08219 -11.97510 -11.69238 -11.50351 -11.41725 -11.39504 -10.94262 -10.88592 -10.83181 -10.51699 -10.14590 -9.55107 -9.07427 -8.99635 -8.59264 -8.41340 -8.19374 -7.69605 -6.09388 -4.08115 0.95249 1.05193 2.51208 3.16370 3.29474 3.35381 3.36046 3.37628 3.39698 3.62880 4.22777 4.28616 4.37794 4.38922 4.39661 4.61220 4.77285 4.89402 4.97377 5.03656 5.07903 5.14545 5.24888 5.26910 5.33226 5.39100 5.47018 5.53934 5.56575 5.63853 5.68005 5.83991 5.86004 5.86701 5.95068 6.07962 6.12855 6.13996 6.30298 6.30958 6.66547 6.87656 6.92792 7.00786 7.32247 7.34792 7.60854 8.25457 8.46424 8.92203 9.00166 9.51140 11.03971 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.002346 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.344681 B =11934.523755 C =12671.672846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.600 5.600 3 C 0.216 3.784 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.506 3.494 13 O -0.528 6.528 14 C 0.038 3.962 15 N -0.661 5.661 16 C 0.155 3.845 17 C -0.183 4.183 18 C -0.139 4.139 19 C -0.060 4.060 20 C -0.089 4.089 21 C -0.098 4.098 22 C 0.024 3.976 23 C 0.026 3.974 24 C -0.093 4.093 25 O -0.312 6.312 26 C 0.214 3.786 27 O -0.311 6.311 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.354 0.646 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.155 0.845 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.082 0.918 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -24.375 6.259 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.333 5.333 3 C 0.096 3.904 4 C -0.566 4.566 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.292 3.708 13 O -0.404 6.404 14 C -0.094 4.094 15 N -0.294 5.294 16 C 0.064 3.936 17 C -0.241 4.241 18 C -0.196 4.196 19 C -0.060 4.060 20 C -0.107 4.107 21 C -0.116 4.116 22 C -0.020 4.020 23 C -0.018 4.018 24 C -0.112 4.112 25 O -0.228 6.228 26 C 0.102 3.898 27 O -0.227 6.227 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.176 0.824 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.173 0.827 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.099 0.901 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.223 -24.388 6.936 25.887 hybrid contribution -0.007 0.331 -0.491 0.592 sum -5.231 -24.057 6.445 25.448 Atomic orbital electron populations 1.21661 0.81083 1.02905 1.00443 1.47821 1.06183 1.07102 1.72200 1.19649 0.92494 0.80009 0.98289 1.21318 1.36946 1.07120 0.91264 0.90882 1.24868 0.95243 0.97386 0.95595 1.69899 1.41502 1.23585 1.18672 0.86834 0.80164 0.79690 0.82893 1.19875 1.21114 1.19069 1.20218 0.88207 0.84833 0.77577 1.90671 1.13705 1.86938 1.49106 1.21957 0.95057 0.89963 1.02448 1.60379 1.18377 0.99316 1.51338 1.19675 0.91086 0.87401 0.95463 1.22616 1.00628 1.02772 0.98124 1.21931 0.98930 1.01749 0.96986 1.19396 0.94296 0.92265 1.00075 1.21069 0.91533 0.99999 0.98068 1.20178 1.01252 0.87429 1.02784 1.19856 0.89022 0.88331 1.04763 1.19651 0.93577 0.83553 1.05021 1.19742 0.98669 0.89073 1.03755 1.87339 1.34332 1.16050 1.85087 1.25583 0.71997 0.92254 1.00004 1.87358 1.35402 1.15012 1.84976 0.93616 0.90564 0.92339 0.95290 0.94505 0.92572 0.92160 0.88311 0.82438 0.91709 0.91525 0.92050 0.91294 0.91888 0.92067 0.82747 0.84610 0.84933 0.90055 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.24 59.85 0.61 1.82 16 2 N -0.60 -11.95 2.86 -182.95 -0.52 -12.47 16 3 C 0.22 5.23 4.23 -5.20 -0.02 5.21 16 4 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 5 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 8 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 12 C 0.51 9.82 7.71 -10.98 -0.08 9.73 16 13 O -0.53 -12.52 15.78 5.55 0.09 -12.44 16 14 C 0.04 0.51 3.93 -4.98 -0.02 0.49 16 15 N -0.66 -8.49 4.72 -102.40 -0.48 -8.98 16 16 C 0.16 1.56 0.79 -132.76 -0.10 1.46 16 17 C -0.18 -1.63 8.04 37.16 0.30 -1.33 16 18 C -0.14 -1.24 8.05 37.16 0.30 -0.94 16 19 C -0.06 -0.64 4.77 -104.62 -0.50 -1.13 16 20 C -0.09 -1.01 9.13 -39.58 -0.36 -1.37 16 21 C -0.10 -1.09 10.06 -39.46 -0.40 -1.49 16 22 C 0.02 0.29 7.15 -39.08 -0.28 0.01 16 23 C 0.03 0.30 7.15 -39.08 -0.28 0.02 16 24 C -0.09 -0.96 8.72 -39.47 -0.34 -1.30 16 25 O -0.31 -3.32 11.40 -45.68 -0.52 -3.84 16 26 C 0.21 1.67 8.89 101.05 0.90 2.57 16 27 O -0.31 -3.44 11.40 -45.70 -0.52 -3.96 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 31 H 0.03 0.67 7.13 -51.92 -0.37 0.30 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.06 0.73 5.56 -51.93 -0.29 0.44 16 35 H 0.10 1.13 6.27 -51.93 -0.33 0.81 16 36 H 0.35 4.93 7.25 -39.29 -0.28 4.64 16 37 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 38 H 0.07 0.57 6.40 -51.93 -0.33 0.24 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.06 0.52 6.40 -51.93 -0.33 0.18 16 42 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 43 H 0.16 1.85 6.39 -52.49 -0.34 1.51 16 44 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.13 1.13 7.09 -52.48 -0.37 0.75 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -35.12 376.40 -7.55 -42.67 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.64 Total: 2.94 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.72 Total: 0.35 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.23 Total: -48.23 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.95 Total: -20.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.12 -7.55 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058415331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.400 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds