Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46492 * 120.00154 * 2 1 4 4 C 1.50693 * 109.47714 * 270.00707 * 3 2 1 5 5 H 1.08000 * 119.99706 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00227 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99829 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00104 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47082 * 89.99953 * 8 6 4 10 10 H 1.48503 * 109.47090 * 210.00078 * 8 6 4 11 11 H 1.48505 * 109.46996 * 330.00385 * 8 6 4 12 12 C 1.34781 * 119.99704 * 180.02562 * 2 1 3 13 13 O 1.21284 * 119.99439 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00310 * 359.97438 * 12 2 1 15 15 N 1.46893 * 109.47049 * 179.97438 * 14 12 2 16 16 C 1.46897 * 111.00028 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47355 * 60.00011 * 16 15 14 18 18 C 1.53002 * 109.47151 * 300.00176 * 16 15 14 19 19 C 1.50699 * 109.47425 * 180.02562 * 16 15 14 20 20 C 1.38247 * 119.92634 * 0.02562 * 19 16 15 21 21 C 1.38240 * 120.14459 * 179.75199 * 20 19 16 22 22 C 1.38552 * 120.02633 * 0.42901 * 21 20 19 23 23 C 1.39265 * 119.82706 * 359.57585 * 22 21 20 24 24 C 1.38231 * 119.92969 * 180.02562 * 19 16 15 25 25 O 1.36496 * 108.64230 * 180.24572 * 23 22 21 26 26 C 1.43981 * 105.48444 * 342.72036 * 25 23 22 27 27 O 1.36505 * 131.53353 * 179.87931 * 22 21 20 28 28 H 1.09006 * 109.46686 * 269.99725 * 1 2 3 29 29 H 1.09000 * 109.47043 * 29.99241 * 1 2 3 30 30 H 1.08998 * 109.47192 * 149.99748 * 1 2 3 31 31 H 1.09010 * 109.46914 * 30.00650 * 3 2 1 32 32 H 1.09003 * 109.47338 * 150.00182 * 3 2 1 33 33 H 0.96998 * 119.99835 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46770 * 60.00254 * 14 12 2 35 35 H 1.08999 * 109.46819 * 300.00348 * 14 12 2 36 36 H 1.00903 * 111.00587 * 303.95795 * 15 14 12 37 37 H 1.09002 * 109.47217 * 180.02562 * 17 16 15 38 38 H 1.08999 * 109.46994 * 300.00641 * 17 16 15 39 39 H 1.08998 * 109.46816 * 60.00191 * 17 16 15 40 40 H 1.09007 * 109.47071 * 300.00210 * 18 16 15 41 41 H 1.08999 * 109.47241 * 59.99339 * 18 16 15 42 42 H 1.08997 * 109.47669 * 179.97438 * 18 16 15 43 43 H 1.07994 * 119.93290 * 0.02562 * 20 19 16 44 44 H 1.07997 * 119.99327 * 180.33354 * 21 20 19 45 45 H 1.08003 * 119.98943 * 0.02562 * 24 19 16 46 46 H 1.09007 * 110.56955 * 268.54960 * 26 25 23 47 47 H 1.09003 * 110.57719 * 145.67764 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0980 1.0960 -2.2416 6 6 3.1269 2.8776 -1.6726 7 7 3.3464 3.2571 -2.9125 8 14 3.7340 3.9286 -0.2527 9 1 5.1071 3.5067 0.1238 10 1 3.7499 5.3554 -0.6645 11 1 2.8275 3.7594 0.9113 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4724 -0.0005 15 7 2.3399 -3.5889 -0.0018 16 6 1.6397 -4.8802 -0.0024 17 6 0.7620 -4.9838 -1.2513 18 6 0.7630 -4.9856 1.2471 19 6 2.6491 -5.9991 -0.0030 20 6 4.0008 -5.7087 -0.0024 21 6 4.9307 -6.7315 0.0022 22 6 4.5095 -8.0515 -0.0028 23 6 3.1479 -8.3441 -0.0035 24 6 2.2217 -7.3137 -0.0042 25 8 2.9930 -9.7002 -0.0032 26 6 4.2660 -10.2326 -0.4144 27 8 5.2077 -9.2244 -0.0022 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6084 2.0283 0.5140 32 1 3.1500 1.1383 0.5138 33 1 3.8233 4.0830 -3.0897 34 1 0.7584 -2.5299 -0.8903 35 1 0.7590 -2.5303 0.8897 36 1 2.9743 -3.5215 -0.7835 37 1 0.2420 -5.9419 -1.2515 38 1 0.0319 -4.1745 -1.2504 39 1 1.3865 -4.9088 -2.1415 40 1 1.3883 -4.9118 2.1370 41 1 0.0329 -4.1763 1.2481 42 1 0.2431 -5.9436 1.2465 43 1 4.3310 -4.6804 -0.0010 44 1 5.9859 -6.5018 0.0081 45 1 1.1651 -7.5378 -0.0052 46 1 4.2948 -10.3641 -1.4961 47 1 4.4686 -11.1760 0.0926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058415331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -75.127407 kcal Electronic energy + Delta-G solvation = -28774.833121 eV Core-core repulsion = 24730.547529 eV Total energy + Delta-G solvation = -4044.285592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.14218 -40.94315 -39.97156 -37.42880 -37.26377 -36.51328 -34.68243 -33.06697 -31.40698 -30.55771 -30.07141 -28.21889 -27.74396 -27.12219 -26.54622 -24.47493 -23.81933 -23.52705 -20.80614 -20.07604 -19.12862 -18.88719 -18.74614 -18.27904 -17.74767 -17.42088 -16.94538 -16.66699 -16.35029 -15.76091 -15.54600 -15.43937 -15.10759 -14.87587 -14.66901 -14.54416 -14.43313 -14.14766 -14.07968 -13.97959 -13.67895 -13.61378 -13.47180 -13.38706 -13.16129 -12.83117 -12.71331 -12.54347 -12.41737 -12.22778 -12.17449 -11.99565 -11.73145 -11.67972 -11.60849 -10.81879 -10.58961 -9.85866 -9.38379 -9.31927 -9.01218 -8.32918 -6.37389 0.11254 0.21957 1.33832 1.38092 1.46203 1.77344 1.88199 2.26974 2.32224 2.51703 2.56081 3.01836 3.19560 3.47804 3.60107 3.78154 3.82081 3.98694 4.07147 4.18021 4.25912 4.28299 4.30649 4.32248 4.45079 4.51282 4.55316 4.71311 4.74788 4.79731 4.84435 4.87417 4.98708 4.99738 5.02045 5.05516 5.09553 5.23714 5.30219 5.41044 5.45294 5.47776 5.48069 5.65522 6.01478 6.13351 6.26571 6.29570 6.63838 6.78243 7.23909 7.50502 8.83913 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.002346 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.344681 B =11934.523755 C =12671.672846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.224 3.776 4 C -0.532 4.532 5 H 0.029 0.971 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.238 1.238 12 C 0.494 3.506 13 O -0.583 6.583 14 C 0.055 3.945 15 N -0.675 5.675 16 C 0.158 3.842 17 C -0.180 4.180 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.100 4.100 21 C -0.107 4.107 22 C 0.009 3.991 23 C 0.018 3.982 24 C -0.090 4.090 25 O -0.322 6.322 26 C 0.204 3.796 27 O -0.328 6.328 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.344 0.656 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.155 0.845 46 H 0.101 0.899 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 -25.661 7.992 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.342 5.342 3 C 0.101 3.899 4 C -0.571 4.571 5 H 0.047 0.953 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.161 1.161 12 C 0.282 3.718 13 O -0.463 6.463 14 C -0.077 4.077 15 N -0.307 5.307 16 C 0.068 3.932 17 C -0.239 4.239 18 C -0.195 4.195 19 C -0.061 4.061 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.035 4.035 23 C -0.026 4.026 24 C -0.109 4.109 25 O -0.239 6.239 26 C 0.094 3.906 27 O -0.245 6.245 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.173 0.827 46 H 0.119 0.881 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.591 -25.707 8.681 28.175 hybrid contribution 0.712 0.610 -1.118 1.459 sum -6.878 -25.098 7.564 27.100 Atomic orbital electron populations 1.21987 0.77606 1.04008 1.03008 1.47949 1.08437 1.05869 1.71974 1.19301 0.92726 0.82708 0.95174 1.21559 1.36512 1.06576 0.92444 0.95285 1.25857 0.95411 0.99051 0.98548 1.70051 1.42837 1.24503 1.21239 0.85716 0.79532 0.77729 0.79964 1.20359 1.20109 1.16077 1.21330 0.87999 0.86497 0.75926 1.90639 1.16369 1.87877 1.51442 1.21896 0.94450 0.86668 1.04666 1.60384 1.18769 1.00417 1.51160 1.19756 0.90971 0.85595 0.96898 1.22598 1.00360 1.04213 0.96733 1.21959 0.98718 1.03445 0.95408 1.19510 0.94026 0.92889 0.99626 1.21027 0.92323 0.99458 0.99041 1.20283 1.01668 0.87619 1.02990 1.20013 0.89615 0.88630 1.05249 1.19869 0.93605 0.84194 1.04975 1.19922 0.99618 0.88430 1.02915 1.87310 1.35688 1.15569 1.85289 1.26092 0.70440 0.92345 1.01734 1.87324 1.36549 1.15311 1.85279 0.90150 0.91754 0.89094 0.93316 0.96520 0.92340 0.90109 0.85314 0.83612 0.89843 0.90604 0.93271 0.92660 0.90531 0.90124 0.83991 0.84088 0.82709 0.88126 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 10.24 127.77 1.31 3.29 16 2 N -0.61 -23.71 2.86 -851.12 -2.43 -26.14 16 3 C 0.22 10.77 4.23 85.63 0.36 11.13 16 4 C -0.53 -31.09 9.94 25.60 0.25 -30.83 16 5 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 6 C 0.01 0.54 5.47 84.65 0.46 1.00 16 7 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 8 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.24 -10.00 6.54 99.48 0.65 -9.34 16 12 C 0.49 18.99 7.71 87.66 0.68 19.66 16 13 O -0.58 -28.52 15.78 -3.04 -0.05 -28.57 16 14 C 0.05 1.35 3.93 85.56 0.34 1.68 16 15 N -0.67 -16.77 4.72 -477.89 -2.25 -19.02 16 16 C 0.16 2.88 0.79 2.78 0.00 2.88 16 17 C -0.18 -2.73 8.04 71.98 0.58 -2.15 16 18 C -0.14 -2.02 8.05 71.98 0.58 -1.44 16 19 C -0.06 -1.22 4.77 -19.86 -0.09 -1.31 16 20 C -0.10 -2.34 9.13 22.27 0.20 -2.14 16 21 C -0.11 -2.47 10.06 22.35 0.22 -2.25 16 22 C 0.01 0.21 7.15 22.59 0.16 0.37 16 23 C 0.02 0.39 7.15 22.59 0.16 0.55 16 24 C -0.09 -1.69 8.72 22.34 0.19 -1.50 16 25 O -0.32 -6.36 11.40 -76.01 -0.87 -7.22 16 26 C 0.20 2.87 8.89 113.37 1.01 3.87 16 27 O -0.33 -7.08 11.40 -76.10 -0.87 -7.95 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 30 H 0.09 1.76 6.44 -2.39 -0.02 1.75 16 31 H 0.05 2.15 7.13 -2.38 -0.02 2.13 16 32 H 0.02 0.87 6.85 -2.39 -0.02 0.86 16 33 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.08 1.69 5.56 -2.39 -0.01 1.68 16 35 H 0.13 2.43 6.27 -2.39 -0.01 2.41 16 36 H 0.34 9.79 7.25 -89.69 -0.65 9.14 16 37 H 0.08 0.96 7.38 -2.39 -0.02 0.94 16 38 H 0.08 1.01 6.40 -2.39 -0.02 1.00 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.08 0.91 6.40 -2.39 -0.02 0.90 16 42 H 0.08 0.88 7.38 -2.39 -0.02 0.86 16 43 H 0.14 3.64 6.39 -2.91 -0.02 3.62 16 44 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 45 H 0.16 2.13 7.09 -2.91 -0.02 2.11 16 46 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -80.76 376.40 2.43 -78.32 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.30 Total: 20.81 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 6.42 Total: 2.83 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.39 Total: -104.66 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.78 Total: -43.74 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -80.76 2.43 -78.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058415331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.197 kcal (2) G-P(sol) polarization free energy of solvation -80.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds