Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86798 * 120.00258 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00564 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00123 * 3 2 1 7 7 C 1.38945 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99757 * 179.97438 * 7 2 1 9 9 N 1.36989 * 120.00463 * 359.72009 * 7 2 1 10 10 C 1.34774 * 119.99898 * 180.02562 * 9 7 2 11 11 O 1.21725 * 120.00413 * 0.02562 * 10 9 7 12 12 C 1.46646 * 119.99692 * 179.97438 * 10 9 7 13 13 C 1.46213 * 123.10953 * 270.00258 * 12 10 9 14 14 C 1.33186 * 111.90391 * 179.62329 * 13 12 10 15 15 S 1.76337 * 110.92886 * 0.46342 * 14 13 12 16 16 C 1.36150 * 123.10149 * 89.70653 * 12 10 9 17 17 N 1.39047 * 124.71000 * 0.09167 * 16 12 10 18 18 C 1.36700 * 125.68369 * 359.69713 * 17 16 12 19 19 C 1.34810 * 108.18894 * 179.82893 * 18 17 16 20 20 C 1.41001 * 107.49887 * 0.41992 * 19 18 17 21 21 C 1.34824 * 107.49194 * 359.73938 * 20 19 18 22 22 C 1.52151 * 127.03356 * 180.52449 * 14 13 12 23 23 S 1.81558 * 108.90428 * 342.08853 * 22 14 13 24 24 C 1.81936 * 101.23072 * 45.04207 * 23 22 14 25 25 C 1.51809 * 120.31342 * 359.13356 * 13 12 10 26 26 H 0.97000 * 120.00305 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99334 * 359.97438 * 9 7 2 28 28 H 1.08004 * 125.90421 * 359.96025 * 18 17 16 29 29 H 1.08003 * 126.25137 * 180.16163 * 19 18 17 30 30 H 1.07995 * 126.25856 * 179.71473 * 20 19 18 31 31 H 1.07994 * 125.90341 * 179.97438 * 21 20 19 32 32 H 1.09003 * 109.56160 * 101.91149 * 22 14 13 33 33 H 1.08996 * 109.56694 * 222.14441 * 22 14 13 34 34 H 1.08994 * 109.69519 * 54.96647 * 24 23 22 35 35 H 1.09004 * 109.68571 * 175.49888 * 24 23 22 36 36 H 1.09000 * 109.02569 * 280.89240 * 25 13 12 37 37 H 1.08999 * 109.03217 * 39.72856 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7083 1.3463 -0.0006 5 1 1.8896 2.3964 -1.2124 6 1 1.8896 2.3963 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0891 -1.2033 -0.0010 9 7 1.3241 -2.3897 0.0047 10 6 1.9981 -3.5569 0.0047 11 8 3.2153 -3.5569 0.0005 12 6 1.2649 -4.8268 0.0109 13 6 0.8707 -5.5155 1.2390 14 6 0.2093 -6.6435 0.9858 15 16 0.0578 -6.9084 -0.7510 16 6 0.8832 -5.4706 -1.1264 17 7 1.1362 -5.0166 -2.4161 18 6 1.7947 -3.8635 -2.7407 19 6 1.8446 -3.7715 -4.0847 20 6 1.1861 -4.9014 -4.6118 21 6 0.7628 -5.6461 -3.5706 22 6 -0.3657 -7.6169 2.0039 23 16 0.4181 -7.3157 3.6137 24 6 0.3558 -5.4996 3.7037 25 6 1.2330 -4.9340 2.5937 26 1 -0.4850 0.8400 0.0004 27 1 0.3542 -2.3896 0.0092 28 1 2.2060 -3.1507 -2.0413 29 1 2.3014 -2.9753 -4.6539 30 1 1.0461 -5.1287 -5.6582 31 1 0.2219 -6.5784 -3.6373 32 1 -1.4418 -7.4642 2.0876 33 1 -0.1659 -8.6397 1.6844 34 1 -0.6711 -5.1601 3.5692 35 1 0.7285 -5.1670 4.6726 36 1 2.2756 -5.1650 2.8122 37 1 1.1099 -3.8515 2.5603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060332213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = 50.389792 kcal Electronic energy + Delta-G solvation = -24064.688250 eV Core-core repulsion = 20639.685045 eV Total energy + Delta-G solvation = -3425.003205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25807 -38.99173 -37.21221 -34.19492 -33.92528 -31.83765 -31.40153 -30.45985 -28.64697 -26.37742 -25.79687 -24.02819 -22.90317 -20.57445 -20.16594 -19.82054 -18.94753 -18.20053 -17.48652 -16.50792 -16.17249 -15.46791 -15.19326 -14.75532 -14.45289 -14.34226 -14.13233 -14.04335 -13.87452 -13.56077 -13.38172 -12.90085 -12.79590 -12.55132 -12.04986 -11.99514 -11.73957 -11.59535 -11.48078 -11.43874 -11.14792 -10.74593 -10.45885 -10.39221 -10.07345 -9.70847 -9.49386 -8.76915 -8.22050 -8.17726 -7.94750 -7.82962 -7.72367 -6.59477 -4.01793 0.73576 1.05074 1.57956 1.77939 2.16264 2.44821 2.94660 3.03391 3.10400 3.18916 3.25573 3.30899 3.58238 4.04075 4.34254 4.60739 4.81125 4.89785 4.99956 5.06027 5.08717 5.18200 5.23868 5.48848 5.56984 5.67861 5.75631 5.83797 5.88950 5.96041 6.04571 6.15304 6.47370 6.49444 6.59097 7.17342 7.38130 7.38967 7.59484 7.84488 8.37422 8.96563 9.30283 9.79904 10.56691 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.005477 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.776447 B = 5110.964491 C = 7376.058197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.309 4.309 8 H 0.108 0.892 9 N -0.541 5.541 10 C 0.489 3.511 11 O -0.582 6.582 12 C -0.141 4.141 13 C -0.030 4.030 14 C -0.213 4.213 15 S 0.178 5.822 16 C 0.034 3.966 17 N -0.369 5.369 18 C 0.020 3.980 19 C -0.202 4.202 20 C -0.177 4.177 21 C -0.040 4.040 22 C -0.005 4.005 23 S -0.243 6.243 24 C -0.077 4.077 25 C -0.061 4.061 26 H 0.275 0.725 27 H 0.394 0.606 28 H 0.187 0.813 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -12.574 1.005 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.438 4.438 8 H 0.126 0.874 9 N -0.175 5.175 10 C 0.273 3.727 11 O -0.469 6.469 12 C -0.160 4.160 13 C -0.043 4.043 14 C -0.331 4.331 15 S 0.444 5.556 16 C -0.179 4.179 17 N -0.042 5.042 18 C -0.108 4.108 19 C -0.226 4.226 20 C -0.202 4.202 21 C -0.165 4.165 22 C -0.155 4.155 23 S -0.016 6.016 24 C -0.225 4.225 25 C -0.102 4.102 26 H 0.085 0.915 27 H 0.228 0.772 28 H 0.204 0.796 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.178 0.822 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.469 -14.391 1.126 15.111 hybrid contribution -0.038 2.880 -0.248 2.891 sum -4.508 -11.511 0.878 12.393 Atomic orbital electron populations 1.69640 1.06078 1.28565 1.48523 1.25333 0.95606 0.99946 0.96414 0.85780 0.79836 0.80751 0.77937 1.18957 1.20479 1.20547 1.19801 0.93577 0.81856 1.48562 0.87404 1.41988 1.09421 1.04281 1.61837 1.16787 0.87221 0.82395 0.86260 1.90720 1.12648 1.86633 1.56865 1.20509 1.04991 1.00476 0.90033 1.20076 0.96789 0.92792 0.94645 1.24021 1.11366 1.01403 0.96294 1.82686 1.56078 1.17780 0.99094 1.21332 1.07259 1.01921 0.87364 1.40643 1.43326 1.18901 1.01357 1.22882 1.00394 0.89746 0.97817 1.20988 1.07484 1.00984 0.93153 1.20933 1.04566 0.96757 0.97927 1.21835 1.09287 1.01405 0.83944 1.21998 1.01669 1.00101 0.91687 1.86885 1.81563 1.09693 1.23498 1.23364 1.03902 0.92525 1.02733 1.20483 1.00583 1.01325 0.87818 0.91534 0.77188 0.79572 0.84017 0.84192 0.82156 0.88111 0.86724 0.89087 0.86699 0.88572 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.14 13.05 55.50 0.72 -22.42 16 2 C 0.03 0.78 5.50 -17.46 -0.10 0.69 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.03 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.12 9.58 -14.99 -0.14 -8.27 16 8 H 0.11 2.98 7.15 -52.48 -0.38 2.60 16 9 N -0.54 -13.28 4.81 -12.17 -0.06 -13.34 16 10 C 0.49 11.58 3.46 -12.87 -0.04 11.54 16 11 O -0.58 -15.84 16.25 5.17 0.08 -15.75 16 12 C -0.14 -2.84 5.74 -104.05 -0.60 -3.44 16 13 C -0.03 -0.50 5.90 -102.63 -0.61 -1.11 16 14 C -0.21 -2.99 6.29 -35.35 -0.22 -3.21 16 15 S 0.18 2.43 22.22 -107.50 -2.39 0.05 16 16 C 0.03 0.62 6.96 -15.02 -0.10 0.52 16 17 N -0.37 -7.04 2.95 -63.18 -0.19 -7.23 16 18 C 0.02 0.42 10.39 -16.60 -0.17 0.24 16 19 C -0.20 -3.69 10.86 -39.75 -0.43 -4.13 16 20 C -0.18 -2.79 10.86 -39.75 -0.43 -3.22 16 21 C -0.04 -0.64 10.94 -16.59 -0.18 -0.82 16 22 C 0.00 -0.05 6.74 36.72 0.25 0.20 16 23 S -0.24 -2.90 22.31 -107.50 -2.40 -5.30 16 24 C -0.08 -0.91 6.50 36.84 0.24 -0.67 16 25 C -0.06 -0.94 5.38 -27.66 -0.15 -1.08 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.39 9.69 7.88 -40.82 -0.32 9.36 16 28 H 0.19 4.49 4.61 -52.48 -0.24 4.24 16 29 H 0.14 2.31 8.06 -52.48 -0.42 1.89 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.16 2.03 7.89 -52.49 -0.41 1.61 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.10 1.64 7.75 -51.93 -0.40 1.24 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -30.12 337.97 -10.70 -40.81 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -3.85 Total: 15.81 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.69 Total: -12.76 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.48 Total: -42.99 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.08 Total: -15.75 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -4.79 Total: -5.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.12 -10.70 -40.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.202 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds