Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34641 * 116.99799 * 2 1 4 4 O 1.21511 * 119.99842 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00086 * 185.00856 * 5 3 2 7 7 H 1.08999 * 109.47035 * 34.22117 * 6 5 3 8 8 C 1.53000 * 109.46890 * 274.22643 * 6 5 3 9 9 C 1.53004 * 109.47054 * 306.74393 * 8 6 5 10 10 C 1.52995 * 109.47154 * 171.98935 * 9 8 6 11 11 C 1.53001 * 109.47126 * 291.98940 * 9 8 6 12 12 C 1.50699 * 109.47080 * 154.22187 * 6 5 3 13 13 O 1.21273 * 120.00289 * 1.91562 * 12 6 5 14 14 N 1.34776 * 119.99563 * 181.63475 * 12 6 5 15 15 C 1.39234 * 119.99679 * 184.80068 * 14 12 6 16 16 C 1.39478 * 119.83647 * 323.82874 * 15 14 12 17 17 C 1.36376 * 120.16803 * 179.71544 * 16 15 14 18 18 C 1.40867 * 119.83155 * 0.57476 * 17 16 15 19 19 C 1.41156 * 120.16692 * 179.67295 * 18 17 16 20 20 H 1.07999 * 119.99454 * 159.70177 * 19 18 17 21 21 C 1.39905 * 119.99790 * 339.70327 * 19 18 17 22 22 N 1.30873 * 119.99959 * 328.40823 * 21 19 18 23 23 Si 1.86799 * 119.99595 * 148.41098 * 21 19 18 24 24 H 1.48505 * 109.47094 * 94.99392 * 23 21 19 25 25 H 1.48506 * 109.46959 * 214.98985 * 23 21 19 26 26 H 1.48499 * 109.47360 * 334.99190 * 23 21 19 27 27 C 1.40873 * 119.66794 * 359.70236 * 18 17 16 28 28 C 1.36367 * 119.82901 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.46651 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46912 * 299.99640 * 1 2 3 31 31 H 1.08999 * 109.47361 * 60.00099 * 1 2 3 32 32 H 0.96999 * 119.99946 * 4.99915 * 5 3 2 33 33 H 1.08997 * 109.47538 * 66.74572 * 8 6 5 34 34 H 1.08996 * 109.46996 * 186.74743 * 8 6 5 35 35 H 1.09003 * 109.46511 * 51.98810 * 9 8 6 36 36 H 1.08997 * 109.47237 * 59.99841 * 10 9 8 37 37 H 1.09001 * 109.47359 * 180.02562 * 10 9 8 38 38 H 1.09003 * 109.47321 * 300.00553 * 10 9 8 39 39 H 1.08993 * 109.47191 * 193.05758 * 11 9 8 40 40 H 1.09000 * 109.47355 * 313.06470 * 11 9 8 41 41 H 1.09000 * 109.46904 * 73.06100 * 11 9 8 42 42 H 0.97000 * 120.00618 * 4.80214 * 14 12 6 43 43 H 1.08001 * 119.91632 * 0.02562 * 16 15 14 44 44 H 1.08007 * 120.08382 * 180.25541 * 17 16 15 45 45 H 0.96998 * 119.99703 * 180.02562 * 22 21 19 46 46 H 1.08005 * 120.07970 * 179.97438 * 27 18 17 47 47 H 1.08005 * 119.91714 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0745 2.5708 0.1102 7 1 3.4853 3.2269 0.7509 8 6 4.2042 3.1972 -1.2796 9 6 4.8842 2.2047 -2.2249 10 6 4.8354 2.7469 -3.6547 11 6 6.3420 2.0139 -1.8014 12 6 5.4455 2.3843 0.7073 13 8 5.8427 1.2710 0.9783 14 7 6.2326 3.4545 0.9349 15 6 7.5354 3.2758 1.3925 16 6 7.8207 2.2467 2.2897 17 6 9.0954 2.0619 2.7377 18 6 10.1230 2.9210 2.3014 19 6 11.4437 2.7404 2.7660 20 1 12.2724 3.1566 2.2124 21 6 11.6789 2.0224 3.9435 22 7 10.7977 2.0451 4.9108 23 14 13.2508 1.0315 4.1348 24 1 14.2662 1.8469 4.8486 25 1 12.9677 -0.2001 4.9147 26 1 13.7682 0.6600 2.7933 27 6 9.8260 3.9617 1.3996 28 6 8.5477 4.1299 0.9553 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 3.9373 0.4600 -0.0741 33 1 3.2133 3.4423 -1.6617 34 1 4.8033 4.1055 -1.2142 35 1 4.3649 1.2474 -2.1813 36 1 5.3546 3.7043 -3.6982 37 1 5.3194 2.0397 -4.3283 38 1 3.7968 2.8830 -3.9565 39 1 6.8861 1.4993 -2.5933 40 1 6.7982 2.9872 -1.6203 41 1 6.3803 1.4193 -0.8886 42 1 5.8914 4.3492 0.7800 43 1 7.0311 1.5915 2.6267 44 1 9.3156 1.2621 3.4294 45 1 10.9610 1.5475 5.7273 46 1 10.6086 4.6245 1.0610 47 1 8.3184 4.9271 0.2635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063268556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -98.726563 kcal Electronic energy + Delta-G solvation = -29340.295450 eV Core-core repulsion = 25294.986521 eV Total energy + Delta-G solvation = -4045.308928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.99438 -39.95753 -37.80112 -36.78833 -36.07658 -34.69484 -34.11294 -33.11242 -30.33230 -29.51103 -28.85664 -27.50966 -27.04583 -25.43052 -24.16424 -21.91298 -21.39933 -21.02357 -20.18258 -19.43586 -18.96717 -17.47389 -17.27065 -16.78867 -16.67938 -16.04083 -15.66890 -15.26525 -15.00477 -14.88283 -14.16525 -14.02170 -13.92952 -13.59840 -13.40059 -12.97426 -12.83559 -12.66184 -12.36987 -12.31312 -12.20940 -12.10919 -12.00949 -11.77971 -11.41071 -11.19574 -11.14885 -10.96408 -10.80945 -10.75345 -10.72168 -10.64398 -10.43061 -10.10961 -9.71667 -9.51632 -9.30093 -8.96633 -8.92245 -7.56949 -7.20109 -6.89829 -4.31550 1.97082 2.47843 2.68094 2.89417 3.03678 3.06925 3.09309 3.26693 3.60965 3.86516 4.12767 4.47322 4.61311 4.75958 4.83770 4.93792 4.97695 5.01091 5.21451 5.30197 5.36602 5.50001 5.65044 5.66101 5.72075 5.82896 5.96464 6.01593 6.06024 6.11171 6.19853 6.23740 6.36550 6.38725 6.60444 6.74574 6.92377 6.99144 7.05430 7.23625 7.29052 7.51976 7.60057 7.87609 8.00036 8.12013 8.19413 8.24207 8.53675 8.63293 8.80650 8.94924 9.99170 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002747 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.902870 B =10189.369330 C =11011.876911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.651 3.349 4 O -0.576 6.576 5 N -0.686 5.686 6 C 0.145 3.855 7 H 0.112 0.888 8 C -0.123 4.123 9 C -0.095 4.095 10 C -0.144 4.144 11 C -0.176 4.176 12 C 0.506 3.494 13 O -0.528 6.528 14 N -0.638 5.638 15 C -0.022 4.022 16 C -0.074 4.074 17 C -0.174 4.174 18 C 0.112 3.888 19 C -0.462 4.462 20 H 0.081 0.919 21 C 0.086 3.914 22 N -0.766 5.766 23 Si 0.897 3.103 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.257 1.257 27 C -0.224 4.224 28 C -0.091 4.091 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.417 0.583 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.395 0.605 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.284 0.716 46 H 0.095 0.905 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.425 -0.734 -9.943 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.465 6.465 5 N -0.346 5.346 6 C 0.037 3.963 7 H 0.130 0.870 8 C -0.162 4.162 9 C -0.114 4.114 10 C -0.201 4.201 11 C -0.233 4.233 12 C 0.293 3.707 13 O -0.406 6.406 14 N -0.280 5.280 15 C -0.114 4.114 16 C -0.094 4.094 17 C -0.194 4.194 18 C 0.109 3.891 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.136 4.136 22 N -0.388 5.388 23 Si 0.721 3.279 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.244 4.244 28 C -0.111 4.111 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.229 0.771 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.600 -1.131 -9.488 17.449 hybrid contribution 0.577 -0.250 0.113 0.639 sum -14.023 -1.381 -9.375 16.924 Atomic orbital electron populations 1.23189 0.74435 1.03430 1.02684 1.86267 1.24124 1.30972 1.87048 1.18009 0.83226 0.82196 0.76185 1.90985 1.64679 1.34788 1.56039 1.44269 1.02940 1.10754 1.76663 1.20790 0.92258 0.84554 0.98654 0.86980 1.22102 1.02312 0.98776 0.93004 1.21101 0.97004 0.98668 0.94586 1.21823 1.01201 1.01152 0.95956 1.22383 0.94528 1.03089 1.03282 1.20093 0.86270 0.85565 0.78817 1.90688 1.73716 1.24194 1.51992 1.42808 1.12802 1.07981 1.64419 1.16992 0.82140 1.05634 1.06629 1.20443 0.96995 0.96822 0.95168 1.20758 0.92242 1.01691 1.04723 1.17608 0.93024 0.88844 0.89638 1.19531 0.93541 1.29726 1.06128 0.90056 1.25964 0.98225 0.94761 0.94666 1.69936 1.35457 1.30088 1.03342 0.86482 0.81897 0.79832 0.79724 1.19452 1.19830 1.18086 1.20451 0.94807 1.01663 1.07430 1.20011 0.92865 0.98759 0.99485 0.88014 0.91840 0.91880 0.74463 0.90192 0.90070 0.91278 0.92628 0.92734 0.93099 0.93099 0.92264 0.89691 0.77118 0.87767 0.87387 0.90500 0.88725 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.56 101.05 1.07 1.53 16 2 O -0.37 -4.37 10.62 -40.33 -0.43 -4.80 16 3 C 0.65 8.75 8.71 54.05 0.47 9.22 16 4 O -0.58 -8.80 15.84 -19.28 -0.31 -9.10 16 5 N -0.69 -8.85 3.81 -59.86 -0.23 -9.08 16 6 C 0.15 1.84 2.65 -69.08 -0.18 1.66 16 7 H 0.11 1.38 7.63 -51.93 -0.40 0.98 16 8 C -0.12 -1.34 4.77 -26.73 -0.13 -1.47 16 9 C -0.10 -1.09 2.79 -90.62 -0.25 -1.34 16 10 C -0.14 -1.42 9.15 37.15 0.34 -1.09 16 11 C -0.18 -2.45 7.90 37.16 0.29 -2.15 16 12 C 0.51 7.97 4.28 -10.99 -0.05 7.93 16 13 O -0.53 -10.10 11.57 5.56 0.06 -10.04 16 14 N -0.64 -10.19 4.75 -9.74 -0.05 -10.24 16 15 C -0.02 -0.46 6.29 -83.57 -0.53 -0.98 16 16 C -0.07 -1.76 8.61 -39.79 -0.34 -2.11 16 17 C -0.17 -4.51 8.74 -39.26 -0.34 -4.85 16 18 C 0.11 2.90 5.59 -106.80 -0.60 2.30 16 19 C -0.46 -11.91 8.95 -37.85 -0.34 -12.25 16 20 H 0.08 2.01 8.01 -52.49 -0.42 1.59 16 21 C 0.09 2.10 4.82 -17.34 -0.08 2.02 16 22 N -0.77 -19.31 11.60 55.55 0.64 -18.67 16 23 Si 0.90 18.08 29.66 -169.99 -5.04 13.04 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.22 -5.23 9.74 -39.26 -0.38 -5.61 16 28 C -0.09 -1.89 9.90 -39.79 -0.39 -2.28 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.42 5.43 7.80 -40.82 -0.32 5.11 16 33 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.08 0.79 7.49 -51.93 -0.39 0.40 16 35 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.68 8.08 -51.93 -0.42 0.27 16 40 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 41 H 0.08 1.41 4.44 -51.93 -0.23 1.18 16 42 H 0.40 4.98 8.44 -40.82 -0.34 4.64 16 43 H 0.10 2.49 6.28 -52.49 -0.33 2.16 16 44 H 0.11 2.90 6.37 -52.48 -0.33 2.57 16 45 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 46 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 47 H 0.09 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -29.71 383.31 -7.90 -37.61 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -6.89 Total: 14.97 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.45 Total: -9.47 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.37 Total: -37.98 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.67 Total: -23.94 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.04 Total: 13.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.71 -7.90 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063268556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.121 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds