Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30294 * 126.34360 * 2 1 4 4 N 1.28530 * 110.07903 * 180.30762 * 3 2 1 5 5 C 1.31288 * 109.85235 * 359.71847 * 4 3 2 6 6 S 1.76197 * 126.48108 * 179.97438 * 5 4 3 7 7 C 1.81002 * 100.00182 * 0.02571 * 6 5 4 8 8 C 1.53000 * 109.47066 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.46946 * 304.99776 * 8 7 6 10 10 C 1.47192 * 109.47336 * 64.99916 * 8 7 6 11 11 N 7.28028 * 154.57389 * 226.24857 * 2 1 3 12 12 C 1.52998 * 109.46824 * 185.00234 * 8 7 6 13 13 C 1.50704 * 109.47218 * 175.00097 * 12 8 7 14 14 H 1.07995 * 119.99710 * 359.97438 * 13 12 8 15 15 C 1.37879 * 120.00148 * 180.02562 * 13 12 8 16 16 N 1.31510 * 120.00065 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99908 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47181 * 59.99303 * 17 15 13 19 19 H 1.48499 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46943 * 299.99440 * 17 15 13 21 21 N 1.36534 * 107.03313 * 0.02562 * 5 4 3 22 22 C 1.46500 * 127.14133 * 180.02562 * 21 5 4 23 23 C 1.52997 * 109.47204 * 300.02161 * 22 21 5 24 24 C 1.52999 * 109.47592 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.46626 * 300.00035 * 24 23 22 26 26 C 1.52997 * 109.47164 * 59.99702 * 25 24 23 27 27 C 1.52996 * 109.46993 * 60.02185 * 22 21 5 28 28 H 1.09002 * 109.47091 * 270.16089 * 1 2 3 29 29 H 1.09003 * 109.46644 * 30.15618 * 1 2 3 30 30 H 1.08995 * 109.46985 * 150.15534 * 1 2 3 31 31 H 1.09003 * 109.46944 * 299.99618 * 7 6 5 32 32 H 1.08998 * 109.47045 * 59.99824 * 7 6 5 33 33 H 1.09005 * 109.47011 * 294.99755 * 12 8 7 34 34 H 1.08995 * 109.47634 * 55.00045 * 12 8 7 35 35 H 0.97002 * 120.00257 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47175 * 180.02562 * 22 21 5 37 37 H 1.09000 * 109.47140 * 59.99873 * 23 22 21 38 38 H 1.09002 * 109.47045 * 299.99966 * 23 22 21 39 39 H 1.08993 * 109.47839 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.47160 * 59.99666 * 24 23 22 41 41 H 1.09001 * 109.46998 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47050 * 299.99699 * 25 24 23 43 43 H 1.09000 * 109.47140 * 60.00051 * 26 25 24 44 44 H 1.09001 * 109.47230 * 179.97438 * 26 25 24 45 45 H 1.08992 * 109.47534 * 60.00265 * 27 22 21 46 46 H 1.08996 * 109.47134 * 299.99460 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5130 0.6895 -0.0065 5 6 3.5952 -0.6208 -0.0049 6 16 5.0747 -1.5777 -0.0125 7 6 6.3067 -0.2516 -0.0214 8 6 7.7106 -0.8599 -0.0296 9 1 7.8148 -1.5444 0.8122 10 6 7.9198 -1.5942 -1.2880 11 7 8.0821 -2.1616 -2.2579 12 6 8.7505 0.2561 0.0887 13 6 10.1258 -0.3490 0.2042 14 1 10.2461 -1.4222 0.1946 15 6 11.2305 0.4675 0.3231 16 7 11.0840 1.7743 0.3353 17 14 12.9352 -0.2827 0.4670 18 1 13.2204 -1.0987 -0.7404 19 1 13.9446 0.8005 0.5817 20 1 12.9958 -1.1462 1.6737 21 7 2.3174 -1.1016 0.0025 22 6 1.9008 -2.5062 0.0073 23 6 2.4414 -3.2027 -1.2430 24 6 2.0058 -4.6694 -1.2384 25 6 2.5578 -5.3613 0.0097 26 6 2.0173 -4.6647 1.2601 27 6 2.4532 -3.1976 1.2554 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8913 -0.5114 31 1 6.1723 0.3632 -0.9114 32 1 6.1828 0.3654 0.8686 33 1 8.7056 0.8900 -0.7970 34 1 8.5415 0.8551 0.9751 35 1 11.8612 2.3488 0.4186 36 1 0.8123 -2.5623 0.0125 37 1 3.5299 -3.1466 -1.2483 38 1 2.0478 -2.7101 -2.1322 39 1 2.3913 -5.1658 -2.1289 40 1 0.9173 -4.7252 -1.2333 41 1 2.2472 -6.4061 0.0133 42 1 3.6463 -5.3055 0.0046 43 1 0.9287 -4.7205 1.2652 44 1 2.4101 -5.1579 2.1492 45 1 2.0681 -2.7015 2.1461 46 1 3.5417 -3.1416 1.2500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066239095.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = 66.755840 kcal Electronic energy + Delta-G solvation = -26211.024657 eV Core-core repulsion = 22647.937207 eV Total energy + Delta-G solvation = -3563.087451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.01115 -39.03071 -36.81772 -34.63023 -34.01876 -32.56807 -32.25731 -31.28457 -29.83549 -28.24996 -27.53909 -24.23842 -23.97675 -23.13948 -22.45830 -21.88324 -20.88881 -20.05103 -18.00815 -16.93885 -16.68306 -16.29258 -16.28364 -15.64832 -14.96744 -14.71521 -14.70359 -14.33629 -14.01781 -13.88783 -13.61672 -13.48116 -13.17157 -13.10416 -12.90034 -12.71777 -12.70874 -12.19642 -12.01439 -11.96863 -11.65425 -11.59036 -11.47951 -11.24140 -11.10261 -11.02220 -10.93764 -10.84444 -10.78339 -10.58710 -10.39834 -10.16475 -10.12405 -9.77300 -9.57323 -9.30222 -8.47587 -7.61369 -6.11305 -4.15904 1.06743 1.54800 2.12209 2.39792 2.76159 3.30121 3.34992 3.37834 3.47420 3.55719 3.97554 4.12973 4.17259 4.38663 4.39875 4.53011 4.61511 4.63464 4.70647 4.73217 4.93324 5.00520 5.08797 5.10376 5.16822 5.25065 5.26609 5.34199 5.40280 5.45238 5.53226 5.53863 5.60422 5.70780 5.76923 5.77771 5.80702 5.88634 5.93420 6.03817 6.22305 6.33747 6.62847 7.39078 7.46390 7.81873 8.16845 8.30519 8.60858 8.87723 9.49714 10.99284 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.002958 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.258232 B = 9464.175370 C =10617.251675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.173 3.827 3 N -0.285 5.285 4 N -0.287 5.287 5 C 0.166 3.834 6 S -0.011 6.011 7 C -0.095 4.095 8 C 0.023 3.977 9 H 0.112 0.888 10 C 0.235 3.765 11 N -0.458 5.458 12 C 0.038 3.962 13 C -0.531 4.531 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.460 5.460 22 C 0.138 3.862 23 C -0.139 4.139 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.112 4.112 27 C -0.137 4.137 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.071 -11.967 2.572 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.096 4.096 3 N -0.125 5.125 4 N -0.131 5.131 5 C -0.208 4.208 6 S 0.219 5.781 7 C -0.244 4.244 8 C -0.001 4.001 9 H 0.130 0.870 10 C -0.082 4.082 11 N -0.134 5.134 12 C -0.002 4.002 13 C -0.569 4.569 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.154 5.154 22 C 0.035 3.965 23 C -0.177 4.177 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.150 4.150 27 C -0.176 4.176 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.177 -12.364 1.119 27.178 hybrid contribution 0.366 0.040 0.424 0.562 sum -23.811 -12.323 1.544 26.856 Atomic orbital electron populations 1.20194 0.83826 1.04339 1.03908 1.25046 0.96799 0.82422 1.05338 1.73962 0.96529 1.23932 1.18123 1.74745 1.11906 1.06523 1.19918 1.26733 0.90862 0.95387 1.07854 1.85544 0.90076 1.09965 1.92513 1.23924 0.93276 0.98454 1.08762 1.19045 0.93339 0.98830 0.88883 0.87034 1.28963 0.91976 0.92736 0.94542 1.80991 1.09627 1.10911 1.11865 1.19222 0.90686 0.90945 0.99338 1.21052 0.90965 0.93087 1.51813 0.92431 1.24943 0.99280 0.94775 0.94812 1.69928 1.30649 1.02764 1.49304 0.86636 0.83701 0.78839 0.78807 1.20214 1.21137 1.19985 1.46670 1.04821 1.08220 1.55716 1.21637 1.00768 0.76323 0.97758 1.22044 1.03433 0.96184 0.96059 1.21466 1.00799 0.93872 0.98854 1.21625 1.01531 0.99261 0.93986 1.21476 1.00863 0.93858 0.98778 1.22038 1.03335 0.96162 0.96033 0.89680 0.88619 0.90647 0.87975 0.86568 0.95115 0.93774 0.92598 0.87729 0.89464 0.91127 0.90898 0.91735 0.91400 0.91137 0.91746 0.90842 0.91023 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.10 36.01 0.36 -0.07 16 2 C 0.17 2.10 8.07 -154.00 -1.24 0.86 16 3 N -0.28 -4.60 12.17 33.00 0.40 -4.20 16 4 N -0.29 -4.97 11.60 30.68 0.36 -4.62 16 5 C 0.17 2.44 7.56 -88.34 -0.67 1.77 16 6 S -0.01 -0.15 17.51 -107.50 -1.88 -2.04 16 7 C -0.09 -1.50 4.65 37.16 0.17 -1.32 16 8 C 0.02 0.41 2.21 -93.41 -0.21 0.21 16 9 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 10 C 0.24 4.73 13.30 -20.79 -0.28 4.45 16 11 N -0.46 -9.90 18.53 42.13 0.78 -9.12 16 12 C 0.04 0.87 4.42 -27.88 -0.12 0.75 16 13 C -0.53 -13.91 8.60 -34.44 -0.30 -14.21 16 14 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 17 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 N -0.46 -5.42 2.66 -106.47 -0.28 -5.70 16 22 C 0.14 1.14 2.72 -67.93 -0.19 0.96 16 23 C -0.14 -1.17 5.25 -26.73 -0.14 -1.31 16 24 C -0.11 -0.70 5.92 -26.73 -0.16 -0.86 16 25 C -0.13 -0.78 5.92 -26.73 -0.16 -0.94 16 26 C -0.11 -0.65 5.92 -26.71 -0.16 -0.80 16 27 C -0.14 -1.08 5.25 -26.71 -0.14 -1.22 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.35 7.26 -51.93 -0.38 -0.03 16 31 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 32 H 0.12 1.77 8.14 -51.92 -0.42 1.35 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.10 0.62 6.90 -51.93 -0.36 0.27 16 37 H 0.09 0.92 6.03 -51.93 -0.31 0.61 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.84 6.04 -51.93 -0.31 0.52 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -32.56 386.24 -9.64 -42.20 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.24 Total: -3.72 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.31 Total: -10.06 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 1.99 Total: -48.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.88 Total: -2.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.56 -9.64 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066239095.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.953 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds