Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47104 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47104 * 179.97438 * 4 3 2 6 6 C 1.50703 * 110.53390 * 182.87462 * 5 4 3 7 7 C 1.38245 * 119.97291 * 331.85381 * 6 5 4 8 8 C 1.38195 * 120.02448 * 179.76969 * 7 6 5 9 9 C 1.38465 * 119.97213 * 0.50739 * 8 7 6 10 10 F 1.35097 * 120.02638 * 179.77231 * 9 8 7 11 11 C 1.38459 * 119.94837 * 359.74484 * 9 8 7 12 12 C 1.38199 * 119.97599 * 0.02562 * 11 9 8 13 13 N 1.47310 * 110.59771 * 305.70158 * 5 4 3 14 14 C 1.34535 * 106.61914 * 118.68124 * 13 5 4 15 15 O 1.21533 * 123.77496 * 179.73377 * 14 13 5 16 16 N 1.33794 * 112.45203 * 359.97438 * 14 13 5 17 17 C 1.46504 * 124.17482 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47134 * 90.02199 * 17 16 14 19 19 H 1.08000 * 120.00173 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00341 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99543 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00236 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47108 * 60.00369 * 22 20 18 24 24 H 1.48499 * 109.46809 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.46997 * 299.99789 * 22 20 18 26 26 C 1.34768 * 111.64772 * 359.97438 * 16 14 13 27 27 O 1.21236 * 127.15541 * 179.97438 * 26 16 14 28 28 H 1.08993 * 109.47683 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47044 * 300.00710 * 1 2 3 30 30 H 1.09001 * 109.46630 * 59.99642 * 1 2 3 31 31 H 1.09005 * 109.46808 * 239.99702 * 2 1 3 32 32 H 1.09001 * 109.46630 * 120.00358 * 2 1 3 33 33 H 1.08997 * 109.46767 * 60.00009 * 3 2 1 34 34 H 1.09001 * 109.47048 * 300.00110 * 3 2 1 35 35 H 1.09005 * 109.46675 * 59.99991 * 4 3 2 36 36 H 1.09001 * 109.47101 * 300.00439 * 4 3 2 37 37 H 1.07994 * 119.98584 * 0.02562 * 7 6 5 38 38 H 1.07997 * 120.01906 * 180.25800 * 8 7 6 39 39 H 1.08002 * 120.01114 * 180.02562 * 11 9 8 40 40 H 1.08001 * 119.98646 * 179.97438 * 12 11 9 41 41 H 0.97004 * 126.69399 * 298.66008 * 13 5 4 42 42 H 1.08993 * 109.46949 * 210.02562 * 17 16 14 43 43 H 1.09003 * 109.46702 * 330.02359 * 17 16 14 44 44 H 0.97002 * 119.99929 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0802 2.8849 0.0000 6 6 5.5853 2.9133 -0.0702 7 6 6.3207 1.8616 0.4440 8 6 7.7007 1.8843 0.3759 9 6 8.3473 2.9659 -0.1980 10 9 9.6966 2.9914 -0.2610 11 6 7.6099 4.0210 -0.7079 12 6 6.2297 3.9939 -0.6430 13 7 3.4948 3.6411 -1.1205 14 6 2.7885 4.6489 -0.5771 15 8 2.1769 5.4731 -1.2280 16 7 2.8388 4.6455 0.7599 17 6 2.1628 5.6275 1.6114 18 6 0.7784 5.1346 1.9451 19 1 0.4364 4.1847 1.5616 20 6 -0.0513 5.8958 2.7408 21 7 0.3654 7.0523 3.2081 22 14 -1.7672 5.2844 3.1549 23 1 -1.6708 3.9885 3.8737 24 1 -2.4523 6.2799 4.0179 25 1 -2.5425 5.0993 1.9021 26 6 3.5881 3.6272 1.2265 27 8 3.8215 3.3612 2.3861 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8892 36 1 3.9330 0.9286 0.8908 37 1 5.8163 1.0200 0.8952 38 1 8.2750 1.0607 0.7739 39 1 8.1131 4.8650 -1.1562 40 1 5.6543 4.8170 -1.0403 41 1 3.5985 3.4498 -2.0658 42 1 2.7316 5.7635 2.5311 43 1 2.0925 6.5787 1.0836 44 1 -0.2182 7.5878 3.7683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069153774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -75.628520 kcal Electronic energy + Delta-G solvation = -29697.709596 eV Core-core repulsion = 25529.941970 eV Total energy + Delta-G solvation = -4167.767627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -49.09098 -42.26305 -39.18977 -37.93647 -36.48515 -35.13069 -34.41493 -32.64337 -31.73586 -31.03418 -29.88273 -27.92162 -26.23264 -23.96429 -23.53167 -22.70668 -22.67518 -21.10300 -20.73813 -19.78882 -18.01872 -17.47844 -17.03082 -16.50425 -16.37731 -15.85175 -15.75447 -15.62420 -15.03379 -14.89356 -14.83605 -14.46336 -13.96989 -13.83076 -13.79772 -13.59900 -13.52788 -13.15382 -12.91571 -12.51758 -12.46042 -12.24301 -12.11695 -11.56930 -11.38694 -11.24552 -11.16229 -11.03576 -10.82443 -10.76750 -10.56446 -10.47073 -10.10448 -9.93894 -9.66001 -9.34551 -9.28542 -8.75665 -8.60989 -8.52958 -6.16180 -4.21528 0.81548 1.01329 2.14984 2.85547 3.29007 3.31043 3.32435 3.34737 3.54295 3.72609 4.01105 4.14159 4.34595 4.40489 4.53471 4.64313 4.72300 4.97279 4.98803 5.05252 5.14024 5.20085 5.26765 5.35267 5.54077 5.64116 5.68096 5.71099 5.81517 5.87152 5.88921 5.90565 5.96530 6.00702 6.21809 6.22866 6.29958 6.41233 6.54487 6.62602 6.99173 7.10241 7.18091 7.76122 7.89139 7.99562 8.02667 8.67467 8.82396 9.43313 10.93253 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.004088 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.636493 B = 6847.089435 C = 8016.500889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.130 4.130 4 C -0.109 4.109 5 C 0.162 3.838 6 C -0.096 4.096 7 C -0.066 4.066 8 C -0.153 4.153 9 C 0.102 3.898 10 F -0.140 7.140 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.730 5.730 14 C 0.701 3.299 15 O -0.537 6.537 16 N -0.554 5.554 17 C 0.249 3.751 18 C -0.534 4.534 19 H 0.060 0.940 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.902 3.098 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.534 3.466 27 O -0.464 6.464 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.432 0.568 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 -13.618 -8.975 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.167 4.167 4 C -0.147 4.147 5 C 0.070 3.930 6 C -0.098 4.098 7 C -0.084 4.084 8 C -0.172 4.172 9 C 0.083 3.917 10 F -0.119 7.119 11 C -0.171 4.171 12 C -0.088 4.088 13 N -0.395 5.395 14 C 0.403 3.597 15 O -0.410 6.410 16 N -0.298 5.298 17 C 0.132 3.868 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.528 5.528 22 Si 0.729 3.271 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C 0.319 3.681 27 O -0.334 6.334 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.276 0.724 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.711 -13.013 -8.463 19.445 hybrid contribution -0.645 -0.233 -0.155 0.703 sum 11.066 -13.246 -8.618 19.292 Atomic orbital electron populations 1.21775 0.95745 1.01242 1.02440 1.21446 0.96146 0.96213 1.01631 1.21716 0.93713 0.97597 1.03714 1.21852 0.97115 0.91837 1.03911 1.20193 0.90567 0.94982 0.87213 1.19604 0.92957 0.95854 1.01348 1.20937 0.92698 0.98073 0.96728 1.21116 0.95087 0.98580 1.02389 1.17781 0.76850 0.96319 1.00794 1.91501 1.29260 1.96686 1.94450 1.21119 0.94269 0.98785 1.02890 1.20910 0.93445 0.97489 0.96912 1.45659 1.54600 1.30907 1.08325 1.15966 0.79523 0.81778 0.82466 1.90973 1.45606 1.40446 1.63942 1.46818 1.46116 1.29425 1.07402 1.19623 0.92249 0.86069 0.88881 1.21176 0.98121 1.05903 1.32002 0.92177 1.24880 0.98824 0.94665 0.95264 1.69910 1.37147 1.11798 1.33966 0.86486 0.83506 0.78626 0.78483 1.20001 1.20962 1.19986 1.20269 0.77968 0.80728 0.89169 1.90740 1.56995 1.67684 1.17983 0.92987 0.92323 0.92716 0.92231 0.91992 0.90996 0.91172 0.89905 0.89377 0.84129 0.84349 0.84435 0.84721 0.72448 0.93030 0.92778 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.13 -1.69 4.69 -26.73 -0.13 -1.82 16 4 C -0.11 -1.20 3.79 -26.73 -0.10 -1.30 16 5 C 0.16 2.20 0.95 -133.25 -0.13 2.07 16 6 C -0.10 -1.15 4.94 -104.62 -0.52 -1.66 16 7 C -0.07 -0.67 9.17 -39.59 -0.36 -1.04 16 8 C -0.15 -1.49 10.03 -39.51 -0.40 -1.88 16 9 C 0.10 1.10 7.30 -39.42 -0.29 0.81 16 10 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 11 C -0.15 -1.62 10.03 -39.51 -0.40 -2.01 16 12 C -0.07 -0.81 9.34 -39.59 -0.37 -1.18 16 13 N -0.73 -9.99 3.93 -54.02 -0.21 -10.20 16 14 C 0.70 13.63 8.53 -88.01 -0.75 12.88 16 15 O -0.54 -12.37 17.48 5.34 0.09 -12.27 16 16 N -0.55 -11.86 2.59 -122.02 -0.32 -12.18 16 17 C 0.25 6.47 5.45 -5.19 -0.03 6.44 16 18 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 21 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 22 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.53 10.16 5.79 -10.56 -0.06 10.10 16 27 O -0.46 -10.04 17.76 5.60 0.10 -9.94 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.21 7.28 -51.93 -0.38 0.83 16 34 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.91 6.80 -51.93 -0.35 0.56 16 37 H 0.14 1.18 6.28 -52.49 -0.33 0.85 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.60 7.43 -52.49 -0.39 1.21 16 41 H 0.43 4.54 8.96 -40.82 -0.37 4.17 16 42 H 0.05 1.41 8.00 -51.93 -0.42 1.00 16 43 H 0.05 1.50 7.86 -51.93 -0.41 1.09 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -32.58 375.08 -8.62 -41.20 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.96 Total: 2.78 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -3.73 Total: 5.18 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.21 Total: -47.57 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.19 Total: -22.21 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.58 -8.62 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069153774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.430 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds