Wall clock time and date at job start Tue Mar 31 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47160 * 2 1 4 4 N 1.46904 * 109.47359 * 239.99791 * 2 1 3 5 5 C 1.46898 * 110.99768 * 59.99858 * 4 2 1 6 6 C 1.50701 * 109.46979 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99868 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00013 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00006 * 180.02562 * 8 6 5 10 10 C 1.50711 * 109.47164 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99750 * 0.02562 * 10 9 8 12 12 C 1.37868 * 119.99701 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00711 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99577 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47607 * 59.99948 * 14 12 10 16 16 H 1.48506 * 109.47305 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47275 * 299.99950 * 14 12 10 18 18 C 1.50700 * 109.47153 * 119.99973 * 2 1 3 19 19 C 1.38255 * 119.94670 * 120.00161 * 18 2 1 20 20 C 1.38196 * 120.11173 * 180.31458 * 19 18 2 21 21 C 1.38702 * 120.06979 * 359.51950 * 20 19 18 22 22 C 1.38976 * 119.81854 * 0.36316 * 21 20 19 23 23 C 1.38201 * 119.94410 * 299.97969 * 18 2 1 24 24 O 1.36106 * 120.78195 * 180.02562 * 22 21 20 25 25 C 1.43170 * 116.71819 * 342.81004 * 24 22 21 26 26 C 1.53473 * 108.24794 * 46.16489 * 25 24 22 27 27 O 1.36101 * 119.39791 * 180.02562 * 21 20 19 28 28 H 1.09002 * 109.46981 * 300.00044 * 1 2 3 29 29 H 1.09004 * 109.46955 * 60.00240 * 1 2 3 30 30 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47252 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46990 * 299.99738 * 3 2 1 33 33 H 1.08992 * 109.47257 * 60.00015 * 3 2 1 34 34 H 1.00896 * 111.00092 * 183.95883 * 4 2 1 35 35 H 1.09000 * 109.47478 * 300.00099 * 5 4 2 36 36 H 1.09001 * 109.47071 * 60.00712 * 5 4 2 37 37 H 0.97003 * 120.00264 * 0.02562 * 8 6 5 38 38 H 1.08998 * 109.47457 * 299.99967 * 9 8 6 39 39 H 1.08996 * 109.47425 * 60.00468 * 9 8 6 40 40 H 0.97003 * 120.00679 * 179.97438 * 13 12 10 41 41 H 1.08002 * 119.93919 * 0.02892 * 19 18 2 42 42 H 1.07998 * 119.96440 * 179.75357 * 20 19 18 43 43 H 1.08008 * 119.96288 * 359.96279 * 23 18 2 44 44 H 1.09002 * 109.70738 * 165.84852 * 25 24 22 45 45 H 1.08992 * 109.70951 * 286.47831 * 25 24 22 46 46 H 1.08997 * 109.71202 * 59.95098 * 26 25 24 47 47 H 1.09000 * 109.70748 * 180.57584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5487 -0.0265 -2.4210 6 6 2.0704 -0.7631 -3.6278 7 8 2.7657 -1.7464 -3.4843 8 7 1.7634 -0.3297 -4.8665 9 6 2.2701 -1.0461 -6.0397 10 6 1.7870 -0.3627 -7.2930 11 1 1.1651 0.5175 -7.2227 12 6 2.1398 -0.8606 -8.5293 13 7 2.8982 -1.9315 -8.6150 14 14 1.5415 -0.0131 -10.0828 15 1 2.0366 1.3867 -10.1052 16 1 2.0550 -0.7394 -11.2721 17 1 0.0567 -0.0133 -10.1064 18 6 2.0323 -0.7104 1.2305 19 6 2.8272 -1.8344 1.1023 20 6 3.2843 -2.4923 2.2284 21 6 2.9551 -2.0207 3.4905 22 6 2.1581 -0.8894 3.6194 23 6 1.6981 -0.2370 2.4851 24 8 1.8235 -0.4094 4.8482 25 6 1.9928 -1.3010 5.9555 26 6 3.3705 -1.9657 5.8310 27 8 3.4131 -2.6789 4.5902 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.0262 -0.7627 -1.1908 35 1 0.4588 -0.0266 -2.4379 36 1 1.9122 1.0010 -2.4379 37 1 1.2070 0.4565 -4.9814 38 1 3.3599 -1.0456 -6.0231 39 1 1.9070 -2.0737 -6.0228 40 1 3.1462 -2.2820 -9.4849 41 1 3.0873 -2.2015 0.1205 42 1 3.9018 -3.3723 2.1255 43 1 1.0778 0.6418 2.5825 44 1 1.9377 -0.7417 6.8895 45 1 1.2139 -2.0631 5.9363 46 1 4.1491 -1.2031 5.8438 47 1 3.5204 -2.6588 6.6588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069413671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:15 Heat of formation + Delta-G solvation = -79.792931 kcal Electronic energy + Delta-G solvation = -28245.246147 eV Core-core repulsion = 24200.758243 eV Total energy + Delta-G solvation = -4044.487904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.51317 -39.63979 -38.47904 -37.49751 -36.44589 -34.14037 -32.35763 -32.03365 -31.32721 -29.91705 -28.57729 -27.78312 -27.44025 -25.77027 -24.97301 -23.12574 -22.25520 -21.49768 -19.79323 -19.47866 -18.83034 -17.76713 -17.39407 -17.02900 -16.04499 -15.72840 -15.56845 -15.32881 -15.16366 -14.86932 -14.74633 -14.64966 -14.18257 -14.08880 -14.01638 -13.75373 -13.44246 -13.33778 -12.91730 -12.82356 -12.43714 -12.20095 -12.04184 -11.91752 -11.70236 -11.52368 -11.38848 -11.33111 -11.14726 -10.99741 -10.94238 -10.84831 -10.60429 -10.30750 -9.39905 -9.03405 -8.77639 -8.71856 -8.38650 -8.16316 -7.84558 -6.15340 -4.22439 1.10948 1.18280 2.72264 2.92972 3.25797 3.30651 3.32043 3.41396 3.53539 3.77557 3.87768 4.30296 4.38396 4.40110 4.47151 4.50966 4.53235 4.81899 4.87532 4.98571 5.05027 5.16524 5.18659 5.20501 5.31822 5.35611 5.37931 5.50087 5.57454 5.61279 5.68083 5.70154 5.75189 5.93943 6.00010 6.08836 6.16876 6.40829 6.49953 6.65934 6.97340 7.18532 7.33059 7.37672 7.46938 7.54174 7.68598 7.98780 8.65492 8.80107 9.14022 9.44319 10.94758 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033009 B = 0.001899 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.053033 B =14738.117817 C =15363.251387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.154 3.846 3 C -0.182 4.182 4 N -0.659 5.659 5 C 0.034 3.966 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.251 3.749 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.064 4.064 19 C -0.094 4.094 20 C -0.112 4.112 21 C 0.044 3.956 22 C 0.045 3.955 23 C -0.107 4.107 24 O -0.310 6.310 25 C 0.021 3.979 26 C 0.021 3.979 27 O -0.309 6.309 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.352 0.648 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.149 0.851 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 5.374 29.718 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.063 3.937 3 C -0.241 4.241 4 N -0.292 5.292 5 C -0.098 4.098 6 C 0.281 3.719 7 O -0.422 6.422 8 N -0.364 5.364 9 C 0.130 3.870 10 C -0.582 4.582 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.065 4.065 19 C -0.113 4.113 20 C -0.131 4.131 21 C -0.001 4.001 22 C 0.001 3.999 23 C -0.126 4.126 24 O -0.224 6.224 25 C -0.055 4.055 26 C -0.055 4.055 27 O -0.223 6.223 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.173 0.827 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.222 0.778 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.167 0.833 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.678 4.040 29.703 30.096 hybrid contribution 0.019 1.546 -0.672 1.686 sum -2.659 5.586 29.031 29.682 Atomic orbital electron populations 1.21929 0.92743 1.03107 1.01822 1.19688 0.95633 0.90655 0.87726 1.22610 1.01780 0.96931 1.02742 1.60355 1.17561 1.51993 0.99304 1.21953 1.02048 0.96289 0.89493 1.20356 0.81616 0.85384 0.84579 1.90660 1.38667 1.26614 1.86280 1.46437 1.52100 1.31423 1.06431 1.19076 0.95005 0.92482 0.80389 1.21198 1.33266 1.13192 0.90594 0.91974 1.24950 0.94830 0.94950 0.99292 1.69961 1.35253 1.21820 1.25220 0.86478 0.79079 0.79444 0.81902 1.20106 1.21078 1.20076 1.19418 0.98159 0.96133 0.92778 1.21047 0.96720 0.94504 0.98986 1.20508 1.02047 1.01732 0.88799 1.18929 0.98334 0.94887 0.87938 1.18742 0.99097 0.96377 0.85704 1.20114 1.01982 1.01463 0.89026 1.86287 1.83059 1.39954 1.13138 1.23598 0.97410 0.94758 0.89686 1.23600 0.97531 0.98180 0.86198 1.86316 1.80616 1.40637 1.14781 0.92130 0.91911 0.91328 0.92238 0.91592 0.91745 0.82677 0.88203 0.92376 0.77834 0.95636 0.95536 0.92394 0.83316 0.84733 0.85012 0.86240 0.90565 0.90606 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.05 37.16 0.30 -1.05 16 2 C 0.15 1.63 0.79 -132.75 -0.11 1.53 16 3 C -0.18 -1.68 8.04 37.16 0.30 -1.38 16 4 N -0.66 -8.65 4.72 -102.39 -0.48 -9.13 16 5 C 0.03 0.47 5.38 -4.98 -0.03 0.44 16 6 C 0.50 9.64 7.87 -10.99 -0.09 9.55 16 7 O -0.54 -12.84 16.20 5.55 0.09 -12.75 16 8 N -0.71 -14.77 5.55 -61.47 -0.34 -15.12 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.62 16 10 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 11 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 12 C 0.06 1.76 5.46 -17.83 -0.10 1.66 16 13 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 14 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 C -0.06 -0.72 4.77 -104.63 -0.50 -1.22 16 19 C -0.09 -1.12 9.13 -39.59 -0.36 -1.48 16 20 C -0.11 -1.30 9.96 -39.43 -0.39 -1.69 16 21 C 0.04 0.51 6.49 -39.14 -0.25 0.26 16 22 C 0.05 0.51 6.49 -39.14 -0.25 0.26 16 23 C -0.11 -1.15 8.63 -39.42 -0.34 -1.49 16 24 O -0.31 -3.14 10.42 -32.86 -0.34 -3.48 16 25 C 0.02 0.13 7.26 37.40 0.27 0.41 16 26 C 0.02 0.13 7.26 37.40 0.27 0.41 16 27 O -0.31 -3.27 10.42 -32.85 -0.34 -3.61 16 28 H 0.06 0.50 7.38 -51.93 -0.38 0.11 16 29 H 0.06 0.57 6.40 -51.93 -0.33 0.24 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.58 6.40 -51.93 -0.33 0.25 16 33 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 34 H 0.35 4.85 7.25 -39.29 -0.28 4.56 16 35 H 0.10 1.21 6.30 -51.93 -0.33 0.88 16 36 H 0.06 0.68 6.30 -51.93 -0.33 0.35 16 37 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 41 H 0.15 1.86 6.39 -52.49 -0.34 1.53 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.13 1.22 7.09 -52.48 -0.37 0.85 16 44 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -33.79 380.08 -8.36 -42.15 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.76 Total: 8.02 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.62 Total: -2.23 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.09 Total: -49.63 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.59 Total: -19.84 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.79 -8.36 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069413671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.646 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds