Wall clock time and date at job start Tue Mar 31 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46715 * 90.56027 * 3 2 1 5 5 C 1.37101 * 120.00205 * 263.84597 * 4 3 2 6 6 H 1.08005 * 120.00130 * 200.91770 * 5 4 3 7 7 C 1.38949 * 119.99700 * 20.91038 * 5 4 3 8 8 N 1.31408 * 120.00181 * 18.48344 * 7 5 4 9 9 Si 1.86797 * 119.99817 * 198.48249 * 7 5 4 10 10 H 1.48502 * 109.47354 * 60.00438 * 9 7 5 11 11 H 1.48499 * 109.47458 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47240 * 300.00161 * 9 7 5 13 13 C 1.34779 * 120.00077 * 83.84838 * 4 3 2 14 14 O 1.21289 * 120.00466 * 179.97438 * 13 4 3 15 15 C 1.50698 * 119.99751 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.47253 * 180.02562 * 15 13 4 17 17 N 1.46897 * 109.47020 * 179.97438 * 16 15 13 18 18 C 1.48535 * 111.00190 * 58.29935 * 17 16 15 19 19 C 1.54933 * 103.22791 * 159.71556 * 18 17 16 20 20 C 1.54601 * 102.92567 * 322.58738 * 19 18 17 21 21 C 1.47911 * 110.99674 * 175.69463 * 17 16 15 22 22 H 1.08999 * 109.91229 * 333.50784 * 21 17 16 23 23 C 1.53000 * 109.91466 * 94.80412 * 21 17 16 24 24 C 1.52998 * 109.47124 * 302.05766 * 23 21 17 25 25 C 1.52996 * 109.47151 * 180.02562 * 24 23 21 26 26 C 1.53001 * 109.47528 * 59.99834 * 25 24 23 27 27 C 1.52998 * 109.47040 * 300.00234 * 26 25 24 28 28 C 1.53002 * 109.46743 * 182.05983 * 23 21 17 29 29 H 1.09003 * 109.46852 * 330.56477 * 3 2 1 30 30 H 1.08998 * 109.46991 * 210.55764 * 3 2 1 31 31 H 0.96999 * 119.99902 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47438 * 59.99860 * 15 13 4 33 33 H 1.09004 * 109.47123 * 299.99833 * 15 13 4 34 34 H 1.08998 * 109.47100 * 59.99546 * 16 15 13 35 35 H 1.09000 * 109.46416 * 299.99632 * 16 15 13 36 36 H 1.08999 * 110.66645 * 41.28407 * 18 17 16 37 37 H 1.08998 * 110.81063 * 278.21764 * 18 17 16 38 38 H 1.09001 * 110.72659 * 204.22777 * 19 18 17 39 39 H 1.09001 * 110.72580 * 80.94490 * 19 18 17 40 40 H 1.08994 * 110.30626 * 263.03968 * 20 19 18 41 41 H 1.08995 * 110.31209 * 140.86923 * 20 19 18 42 42 H 1.08996 * 109.47341 * 62.05737 * 23 21 17 43 43 H 1.09007 * 109.47160 * 300.00631 * 24 23 21 44 44 H 1.09000 * 109.46907 * 59.99867 * 24 23 21 45 45 H 1.08996 * 109.46888 * 299.99711 * 25 24 23 46 46 H 1.09001 * 109.47030 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47533 * 180.02562 * 26 25 24 48 48 H 1.09007 * 109.46688 * 59.99965 * 26 25 24 49 49 H 1.09002 * 109.46991 * 300.00341 * 27 26 25 50 50 H 1.08993 * 109.47308 * 179.97438 * 27 26 25 51 51 H 1.09001 * 109.47274 * 299.99715 * 28 23 21 52 52 H 1.09000 * 109.47039 * 60.00118 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.0144 -1.3812 5 6 3.4453 -1.1600 -1.9967 6 1 4.1036 -1.1461 -2.8528 7 6 2.9522 -2.3679 -1.5188 8 7 1.8953 -2.3835 -0.7380 9 14 3.7915 -3.9698 -1.9865 10 1 5.2000 -3.9463 -1.5164 11 1 3.0767 -5.1067 -1.3527 12 1 3.7649 -4.1301 -3.4626 13 6 3.2024 1.1815 -2.0469 14 8 3.6071 1.1930 -3.1902 15 6 2.8183 2.4722 -1.3706 16 6 3.0311 3.6381 -2.3383 17 7 2.6561 4.8962 -1.6792 18 6 3.4526 5.1078 -0.4435 19 6 3.3279 6.6325 -0.1980 20 6 3.3669 7.2174 -1.6286 21 6 2.9454 6.0570 -2.5491 22 1 3.7567 5.8137 -3.2351 23 6 1.6913 6.4444 -3.3353 24 6 1.2174 5.2472 -4.1618 25 6 -0.0363 5.6348 -4.9485 26 6 0.2882 6.8027 -5.8821 27 6 0.7621 7.9999 -5.0557 28 6 2.0154 7.6124 -4.2689 29 1 2.9717 -0.8942 0.5051 30 1 2.9709 0.8857 0.5225 31 1 1.5509 -3.2268 -0.4048 32 1 3.4374 2.6168 -0.4852 33 1 1.7692 2.4307 -1.0775 34 1 2.4117 3.4933 -3.2234 35 1 4.0801 3.6798 -2.6317 36 1 4.4937 4.8280 -0.6042 37 1 3.0295 4.5481 0.3906 38 1 4.1687 6.9984 0.3913 39 1 2.3821 6.8687 0.2895 40 1 4.3759 7.5482 -1.8747 41 1 2.6640 8.0456 -1.7180 42 1 0.9048 6.7412 -2.6416 43 1 2.0041 4.9504 -4.8555 44 1 0.9867 4.4151 -3.4966 45 1 -0.8230 5.9318 -4.2550 46 1 -0.3741 4.7818 -5.5369 47 1 -0.6051 7.0792 -6.4422 48 1 1.0750 6.5057 -6.5756 49 1 -0.0246 8.2968 -4.3621 50 1 0.9937 8.8317 -5.7208 51 1 2.3530 8.4654 -3.6802 52 1 2.8019 7.3156 -4.9627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069438263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:44 Heat of formation + Delta-G solvation = -18.763227 kcal Electronic energy + Delta-G solvation = -29941.270354 eV Core-core repulsion = 26132.980653 eV Total energy + Delta-G solvation = -3808.289701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.01550 -38.79041 -37.48873 -35.78190 -34.34958 -33.24631 -31.84485 -31.81207 -30.68339 -29.00383 -27.39163 -27.33984 -25.08327 -23.46605 -22.77635 -21.91104 -20.73509 -19.89822 -19.73948 -18.76289 -17.85910 -16.66709 -16.40696 -16.16792 -15.38592 -15.06923 -14.72372 -14.49374 -14.28076 -14.20793 -14.09823 -13.81574 -13.41362 -13.24973 -12.95950 -12.87576 -12.60718 -12.39426 -12.22436 -12.00055 -11.85469 -11.67250 -11.56915 -11.32501 -11.25999 -11.20396 -11.15928 -11.10264 -11.07926 -10.85692 -10.72511 -10.61408 -10.51332 -10.41848 -10.34278 -10.28126 -9.93614 -9.77177 -9.23990 -8.57641 -8.26049 -8.00733 -6.47901 -4.01337 3.12956 3.21883 3.24031 3.57945 3.81639 3.97595 4.02764 4.15939 4.51526 4.60776 4.72638 4.81051 4.84661 4.88090 4.92772 5.02652 5.15718 5.24569 5.26127 5.36289 5.39674 5.45695 5.49140 5.53475 5.55113 5.57086 5.60053 5.65038 5.73810 5.74510 5.77020 5.85138 5.90404 5.94766 6.01545 6.05575 6.11517 6.12614 6.17150 6.20173 6.23855 6.31458 6.33588 6.39761 6.51785 6.55153 6.60064 7.06863 7.23805 7.47654 7.93317 8.29533 8.79406 9.01606 9.20910 9.75733 10.58172 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002975 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.638129 B = 9409.275080 C =10035.003173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.247 3.753 3 C 0.224 3.776 4 N -0.444 5.444 5 C -0.314 4.314 6 H 0.106 0.894 7 C 0.032 3.968 8 N -0.880 5.880 9 Si 0.928 3.072 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.459 3.541 14 O -0.575 6.575 15 C -0.133 4.133 16 C 0.061 3.939 17 N -0.513 5.513 18 C 0.032 3.968 19 C -0.123 4.123 20 C -0.126 4.126 21 C 0.071 3.929 22 H 0.052 0.948 23 C -0.066 4.066 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.115 4.115 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.273 0.727 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 19.071 0.397 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.072 4.072 3 C 0.096 3.904 4 N -0.165 5.165 5 C -0.441 4.441 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.519 5.519 9 Si 0.755 3.245 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.247 3.753 14 O -0.458 6.458 15 C -0.174 4.174 16 C -0.066 4.066 17 N -0.237 5.237 18 C -0.096 4.096 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.037 4.037 22 H 0.070 0.930 23 C -0.085 4.085 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.153 4.153 29 H 0.142 0.858 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.612 18.850 0.023 18.860 hybrid contribution 1.492 -1.128 -0.320 1.898 sum 2.104 17.722 -0.296 17.849 Atomic orbital electron populations 1.80891 1.13604 1.12332 1.08451 1.29252 0.95329 0.90077 0.92499 1.18673 0.81709 1.03485 0.86513 1.43602 1.56788 1.06255 1.09852 1.19652 1.27398 0.81799 1.15253 0.87651 1.25294 0.94849 0.99775 0.97219 1.69793 1.19349 1.28075 1.34641 0.85955 0.79194 0.80331 0.79031 1.19747 1.21021 1.19841 1.20149 0.83443 0.84951 0.86729 1.90538 1.50276 1.86895 1.18063 1.21596 1.03053 0.93481 0.99221 1.22153 0.99850 0.87311 0.97330 1.64666 1.52822 1.01574 1.04595 1.23239 0.96272 0.96018 0.94079 1.22471 1.01969 0.95133 0.96542 1.22478 1.01131 0.97915 0.94921 1.22402 0.96496 0.90583 0.94246 0.93040 1.21077 0.96736 0.94776 0.95907 1.21727 0.97064 0.98278 0.98485 1.21533 0.98167 0.97744 0.98251 1.21545 1.00643 0.95599 0.97931 1.21494 0.97786 0.97489 0.98640 1.21619 0.97662 0.97909 0.98149 0.85772 0.90015 0.91593 0.90322 0.89579 0.89146 0.94212 0.93747 0.89904 0.91440 0.90906 0.91853 0.90935 0.90776 0.92431 0.90304 0.92195 0.92184 0.92524 0.92181 0.92165 0.92464 0.92121 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.32 18.54 42.15 0.78 -10.54 16 2 C 0.25 5.46 12.80 -20.76 -0.27 5.20 16 3 C 0.22 4.41 4.91 -6.83 -0.03 4.37 16 4 N -0.44 -10.31 2.60 -117.93 -0.31 -10.61 16 5 C -0.31 -8.07 9.28 -14.93 -0.14 -8.21 16 6 H 0.11 2.85 7.42 -52.48 -0.39 2.46 16 7 C 0.03 0.79 4.91 -17.47 -0.09 0.71 16 8 N -0.88 -22.29 9.43 55.50 0.52 -21.76 16 9 Si 0.93 19.72 29.59 -169.99 -5.03 14.69 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.46 10.28 7.56 -10.99 -0.08 10.20 16 14 O -0.57 -14.84 15.66 5.55 0.09 -14.75 16 15 C -0.13 -2.28 4.12 -27.88 -0.11 -2.40 16 16 C 0.06 0.98 3.63 -3.82 -0.01 0.97 16 17 N -0.51 -6.77 4.62 -222.57 -1.03 -7.80 16 18 C 0.03 0.36 5.34 -1.90 -0.01 0.35 16 19 C -0.12 -1.15 7.06 -24.87 -0.18 -1.33 16 20 C -0.13 -1.19 6.00 -25.37 -0.15 -1.34 16 21 C 0.07 0.82 2.18 -66.64 -0.15 0.68 16 22 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 23 C -0.07 -0.72 1.77 -90.62 -0.16 -0.88 16 24 C -0.12 -1.49 3.87 -26.73 -0.10 -1.59 16 25 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 26 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 27 C -0.12 -1.03 5.92 -26.75 -0.16 -1.19 16 28 C -0.12 -1.07 5.00 -26.75 -0.13 -1.20 16 29 H 0.12 2.50 6.58 -51.93 -0.34 2.16 16 30 H 0.08 1.23 6.70 -51.93 -0.35 0.88 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.08 1.15 6.17 -51.93 -0.32 0.82 16 33 H 0.09 1.53 7.48 -51.93 -0.39 1.14 16 34 H 0.09 1.59 5.20 -51.93 -0.27 1.32 16 35 H 0.04 0.67 7.93 -51.93 -0.41 0.26 16 36 H 0.04 0.51 8.02 -51.93 -0.42 0.10 16 37 H 0.08 0.92 7.66 -51.93 -0.40 0.52 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.63 6.73 -51.93 -0.35 0.28 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.77 8.07 -51.92 -0.42 0.35 16 44 H 0.08 1.17 5.90 -51.93 -0.31 0.86 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.50 6.80 -51.93 -0.35 0.15 16 52 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -29.74 394.16 -10.02 -39.76 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.90 Total: 3.58 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.09 Total: 1.50 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.03 Total: -50.71 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.09 Total: -14.75 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.74 -10.02 -39.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069438263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.993 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds