Wall clock time and date at job start Tue Mar 31 2020 05:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35815 * 117.00236 * 2 1 4 4 C 1.38863 * 119.90380 * 359.97438 * 3 2 1 5 5 C 1.37749 * 120.17682 * 179.69507 * 4 3 2 6 6 C 1.39951 * 119.97149 * 0.62388 * 5 4 3 7 7 C 1.47002 * 120.09428 * 179.67499 * 6 5 4 8 8 C 1.34984 * 120.00267 * 359.72253 * 7 6 5 9 9 C 1.46253 * 119.99954 * 179.97438 * 8 7 6 10 10 O 1.21714 * 120.00313 * 354.74120 * 9 8 7 11 11 N 1.34780 * 119.99467 * 174.73580 * 9 8 7 12 12 C 1.46502 * 120.00099 * 4.75149 * 11 9 8 13 13 C 1.50702 * 109.47049 * 89.99916 * 12 11 9 14 14 H 1.08003 * 120.00102 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99762 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99596 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99905 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47024 * 90.00266 * 17 15 13 19 19 H 1.48498 * 109.46917 * 210.00055 * 17 15 13 20 20 H 1.48502 * 109.47256 * 329.99897 * 17 15 13 21 21 C 1.46501 * 119.99635 * 184.74796 * 11 9 8 22 22 C 1.52999 * 109.47211 * 124.70535 * 21 11 9 23 23 C 1.53007 * 109.47131 * 244.70107 * 21 11 9 24 24 C 1.39962 * 119.81108 * 359.39571 * 6 5 4 25 25 C 1.38091 * 119.82636 * 0.27995 * 24 6 5 26 26 O 1.35998 * 119.98904 * 179.97438 * 25 24 6 27 27 C 1.42901 * 117.00215 * 359.97438 * 26 25 24 28 28 H 1.09006 * 109.46945 * 60.00114 * 1 2 3 29 29 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47121 * 299.99955 * 1 2 3 31 31 H 1.08008 * 119.91241 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.01807 * 180.29321 * 5 4 3 33 33 H 1.08008 * 120.00026 * 179.72154 * 7 6 5 34 34 H 1.07998 * 119.99612 * 359.72342 * 8 7 6 35 35 H 1.08999 * 109.47002 * 209.99515 * 12 11 9 36 36 H 1.08996 * 109.47159 * 329.99469 * 12 11 9 37 37 H 0.96998 * 119.99509 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47154 * 4.70220 * 21 11 9 39 39 H 1.09002 * 109.47662 * 59.99200 * 22 21 11 40 40 H 1.08995 * 109.47368 * 179.97438 * 22 21 11 41 41 H 1.09003 * 109.46730 * 299.99714 * 22 21 11 42 42 H 1.08997 * 109.46647 * 60.00143 * 23 21 11 43 43 H 1.08995 * 109.47167 * 180.02562 * 23 21 11 44 44 H 1.09003 * 109.46981 * 300.00371 * 23 21 11 45 45 H 1.08006 * 120.08856 * 180.29660 * 24 6 5 46 46 H 1.08993 * 109.47227 * 180.02562 * 27 26 25 47 47 H 1.08995 * 109.47059 * 300.00218 * 27 26 25 48 48 H 1.08998 * 109.46699 * 59.99736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 1.2875 2.3735 -0.0005 5 6 1.9070 3.6037 0.0058 6 6 3.3043 3.6829 -0.0004 7 6 3.9682 4.9945 -0.0009 8 6 3.2301 6.1247 -0.0010 9 6 3.8908 7.4295 -0.0009 10 8 5.1021 7.4984 0.0959 11 7 3.1581 8.5557 -0.1081 12 6 1.6951 8.4795 -0.1199 13 6 1.1757 8.5765 1.2915 14 1 1.8663 8.6837 2.1149 15 6 -0.1812 8.5283 1.5315 16 7 -0.6344 8.6125 2.7632 17 14 -1.3756 8.3436 0.1072 18 1 -1.6213 6.9016 -0.1489 19 1 -2.6578 9.0115 0.4466 20 1 -0.7974 8.9708 -1.1084 21 6 3.8248 9.8560 -0.2128 22 6 3.3406 10.5775 -1.4721 23 6 3.4916 10.7006 1.0188 24 6 4.0677 2.5099 -0.0002 25 6 3.4383 1.2808 0.0002 26 8 4.1769 0.1388 -0.0001 27 6 5.5983 0.2855 -0.0015 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2091 2.3135 -0.0014 32 1 1.3148 4.5069 0.0101 33 1 5.0467 5.0539 -0.0011 34 1 2.1518 6.0653 -0.0053 35 1 1.2933 9.3015 -0.7122 36 1 1.3842 7.5307 -0.5571 37 1 -1.5890 8.5782 2.9320 38 1 4.9031 9.7078 -0.2709 39 1 2.2622 10.7256 -1.4141 40 1 3.8362 11.5451 -1.5498 41 1 3.5779 9.9758 -2.3495 42 1 3.8366 10.1866 1.9159 43 1 3.9872 11.6682 0.9407 44 1 2.4133 10.8487 1.0768 45 1 5.1463 2.5658 -0.0002 46 1 6.0652 -0.6994 -0.0021 47 1 5.9061 0.8336 -0.8919 48 1 5.9077 0.8342 0.8880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069530511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:52 Heat of formation + Delta-G solvation = -62.829980 kcal Electronic energy + Delta-G solvation = -28664.036585 eV Core-core repulsion = 24685.710160 eV Total energy + Delta-G solvation = -3978.326425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59598 -39.36105 -38.54655 -37.27970 -35.91472 -33.36099 -32.72817 -31.51113 -30.47956 -29.42868 -27.90309 -27.37907 -26.99934 -26.68574 -24.01068 -22.62330 -22.27065 -21.52394 -19.64091 -18.52525 -17.98098 -17.23688 -16.99210 -16.71658 -16.50454 -16.16697 -15.41650 -15.35577 -14.81147 -14.60115 -14.53781 -14.47808 -13.95797 -13.57241 -13.41728 -12.99353 -12.88082 -12.66564 -12.52065 -12.41778 -12.20982 -12.06462 -11.72866 -11.63109 -11.52432 -11.43241 -11.34113 -11.30436 -11.02581 -10.92164 -10.82704 -10.65043 -10.26586 -10.13494 -9.56169 -9.53502 -9.20042 -8.72692 -8.61084 -7.80037 -7.49787 -6.22139 -4.22513 0.74738 1.33350 2.24054 3.12680 3.15050 3.17116 3.22046 3.23579 3.68044 3.79708 4.07964 4.23916 4.67714 4.76019 4.88256 4.98656 5.03400 5.04808 5.06427 5.07541 5.24294 5.28873 5.35191 5.35798 5.37781 5.52243 5.59489 5.63135 5.68786 5.77241 6.07631 6.10333 6.13939 6.21994 6.30336 6.32241 6.37843 6.50578 6.57014 6.61112 6.68827 6.78074 6.87701 6.95442 7.05099 7.38770 7.44440 7.48197 8.12872 8.41105 8.83467 8.91938 9.36923 10.90407 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.003458 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.186722 B = 8095.809322 C =10021.949540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.101 3.899 4 C -0.171 4.171 5 C -0.095 4.095 6 C -0.055 4.055 7 C -0.055 4.055 8 C -0.171 4.171 9 C 0.548 3.452 10 O -0.575 6.575 11 N -0.579 5.579 12 C 0.204 3.796 13 C -0.535 4.535 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.866 3.134 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.264 1.264 21 C 0.137 3.863 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.156 4.156 25 C 0.094 3.906 26 O -0.309 6.309 27 C 0.026 3.974 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.037 0.963 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.139 0.861 46 H 0.098 0.902 47 H 0.055 0.945 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -12.341 -8.096 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.055 3.945 4 C -0.190 4.190 5 C -0.114 4.114 6 C -0.056 4.056 7 C -0.075 4.075 8 C -0.191 4.191 9 C 0.339 3.661 10 O -0.459 6.459 11 N -0.308 5.308 12 C 0.083 3.917 13 C -0.573 4.573 14 H 0.099 0.901 15 C -0.127 4.127 16 N -0.527 5.527 17 Si 0.692 3.308 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.189 1.189 21 C 0.033 3.967 22 C -0.218 4.218 23 C -0.213 4.213 24 C -0.175 4.175 25 C 0.049 3.951 26 O -0.223 6.223 27 C -0.070 4.070 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.156 0.844 46 H 0.116 0.884 47 H 0.073 0.927 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.349 -12.647 -7.939 15.861 hybrid contribution -1.073 0.293 -0.462 1.205 sum 4.276 -12.354 -8.401 15.539 Atomic orbital electron populations 1.23083 0.78558 1.03832 1.01528 1.86101 1.21032 1.26093 1.88883 1.18393 0.89062 0.85152 1.01888 1.21024 1.00116 0.91252 1.06615 1.21293 0.93833 0.97730 0.98505 1.18741 0.92786 0.92454 1.01574 1.22107 0.99827 0.89976 0.95591 1.23287 1.01467 0.92131 1.02264 1.18163 0.86374 0.85055 0.76519 1.90699 1.14379 1.87955 1.52834 1.47881 1.08321 1.05071 1.69571 1.19860 0.75812 0.97392 0.98618 1.21415 0.92802 1.51355 0.91720 0.90095 1.24866 0.97989 0.94540 0.95316 1.69890 1.14269 1.49470 1.19110 0.87014 0.81426 0.78976 0.83375 1.19888 1.20899 1.18852 1.20884 0.97710 0.83075 0.95005 1.22144 1.02384 0.99872 0.97365 1.22116 1.03824 0.97918 0.97399 1.21203 1.00221 0.90287 1.05744 1.18037 0.88160 0.85894 1.03040 1.86150 1.18644 1.28136 1.89354 1.23061 0.78769 1.03706 1.01436 0.92630 0.88328 0.92478 0.84464 0.84402 0.85169 0.84392 0.94478 0.95348 0.92422 0.89419 0.91730 0.92025 0.92957 0.92683 0.93310 0.90289 0.84377 0.88353 0.92673 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.05 10.26 -33.83 -0.35 -4.39 16 3 C 0.10 1.41 6.71 -38.90 -0.26 1.15 16 4 C -0.17 -2.29 9.01 -39.53 -0.36 -2.64 16 5 C -0.10 -1.40 9.40 -39.12 -0.37 -1.77 16 6 C -0.06 -0.82 5.87 -105.06 -0.62 -1.44 16 7 C -0.06 -0.89 9.45 -37.19 -0.35 -1.25 16 8 C -0.17 -3.17 8.61 -37.52 -0.32 -3.49 16 9 C 0.55 11.46 7.59 -13.04 -0.10 11.36 16 10 O -0.58 -12.97 15.59 5.18 0.08 -12.89 16 11 N -0.58 -11.90 2.39 -169.16 -0.40 -12.30 16 12 C 0.20 4.41 3.57 -5.19 -0.02 4.39 16 13 C -0.53 -13.65 8.40 -34.44 -0.29 -13.94 16 14 H 0.08 2.34 7.84 -52.48 -0.41 1.93 16 15 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 17 Si 0.87 19.17 27.47 -169.99 -4.67 14.51 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 21 C 0.14 2.50 3.24 -67.93 -0.22 2.28 16 22 C -0.16 -2.44 9.08 37.16 0.34 -2.11 16 23 C -0.15 -2.83 8.60 37.16 0.32 -2.51 16 24 C -0.16 -2.07 8.78 -38.99 -0.34 -2.41 16 25 C 0.09 1.31 6.69 -39.19 -0.26 1.04 16 26 O -0.31 -4.03 10.27 -34.41 -0.35 -4.38 16 27 C 0.03 0.22 9.81 101.05 0.99 1.21 16 28 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 31 H 0.14 1.52 6.27 -52.48 -0.33 1.19 16 32 H 0.14 2.05 6.15 -52.49 -0.32 1.72 16 33 H 0.13 2.05 7.53 -52.48 -0.40 1.65 16 34 H 0.14 2.54 4.17 -52.49 -0.22 2.32 16 35 H 0.04 0.79 5.25 -51.93 -0.27 0.52 16 36 H 0.03 0.59 5.40 -51.93 -0.28 0.31 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.09 1.64 6.93 -51.93 -0.36 1.28 16 39 H 0.06 1.03 6.53 -51.93 -0.34 0.69 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 45 H 0.14 1.51 6.28 -52.48 -0.33 1.18 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 48 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -31.70 387.84 -6.95 -38.65 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.91 Total: 6.53 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.97 Total: -7.01 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.37 Total: -36.86 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.62 Total: -21.66 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.70 -6.95 -38.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069530511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.179 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds