Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99868 * 2 1 4 4 H 1.48501 * 109.46761 * 275.28075 * 3 2 1 5 5 H 1.48497 * 109.47270 * 35.27989 * 3 2 1 6 6 H 1.48496 * 109.46954 * 155.27968 * 3 2 1 7 7 C 1.38808 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00103 * 339.78184 * 7 2 1 9 9 N 1.36935 * 119.99822 * 159.78731 * 7 2 1 10 10 C 1.46505 * 120.00365 * 321.73146 * 9 7 2 11 11 C 1.50692 * 109.47138 * 270.00229 * 10 9 7 12 12 C 1.34544 * 126.08351 * 94.99714 * 11 10 9 13 13 O 1.34771 * 107.27640 * 179.97438 * 12 11 10 14 14 C 1.34421 * 107.69153 * 0.02562 * 13 12 11 15 15 C 1.47833 * 125.72597 * 179.97438 * 14 13 12 16 16 C 1.39569 * 120.14452 * 179.74875 * 15 14 13 17 17 C 1.37955 * 119.85197 * 179.71854 * 16 15 14 18 18 C 1.38356 * 120.14359 * 0.55651 * 17 16 15 19 19 C 1.38355 * 120.29699 * 359.71746 * 18 17 16 20 20 C 1.37970 * 120.13857 * 0.02562 * 19 18 17 21 21 N 1.31224 * 108.54906 * 359.73031 * 14 13 12 22 22 C 1.46507 * 119.99794 * 141.73237 * 9 7 2 23 23 C 1.50702 * 109.46950 * 85.14513 * 22 9 7 24 24 C 1.38233 * 119.99803 * 95.26694 * 23 22 9 25 25 C 1.38240 * 119.99869 * 179.97438 * 24 23 22 26 26 C 1.38228 * 120.00022 * 0.07466 * 25 24 23 27 27 C 1.38239 * 119.99847 * 359.90667 * 26 25 24 28 28 C 1.38224 * 119.99984 * 275.24597 * 23 22 9 29 29 H 0.97008 * 119.99983 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46440 * 30.00658 * 10 9 7 31 31 H 1.08998 * 109.47092 * 150.00147 * 10 9 7 32 32 H 1.08005 * 126.35956 * 0.02562 * 12 11 10 33 33 H 1.08003 * 120.07208 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.93007 * 180.27621 * 17 16 15 35 35 H 1.08004 * 119.85296 * 179.74045 * 18 17 16 36 36 H 1.07988 * 119.93276 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.06608 * 180.02562 * 20 19 18 38 38 H 1.08992 * 109.47187 * 325.14559 * 22 9 7 39 39 H 1.09000 * 109.46987 * 205.14109 * 22 9 7 40 40 H 1.08005 * 120.00171 * 359.70030 * 24 23 22 41 41 H 1.07999 * 119.99918 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.99988 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.99541 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.00162 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3860 2.1109 -1.3942 5 1 1.5079 2.6180 0.8086 6 1 3.5990 1.4106 0.5855 7 6 2.0102 -1.2021 -0.0005 8 1 1.5201 -2.1088 0.3223 9 7 3.3163 -1.2384 -0.4103 10 6 3.7534 -0.4124 -1.5386 11 6 3.5929 -1.1879 -2.8207 12 6 2.5356 -1.1359 -3.6511 13 8 2.7888 -1.9757 -4.6744 14 6 3.9940 -2.5306 -4.4588 15 6 4.6611 -3.5142 -5.3380 16 6 5.9209 -4.0128 -5.0028 17 6 6.5353 -4.9349 -5.8246 18 6 5.9105 -5.3568 -6.9847 19 6 4.6642 -4.8623 -7.3257 20 6 4.0364 -3.9437 -6.5099 21 7 4.4813 -2.0487 -3.3398 22 6 4.2767 -2.1033 0.2797 23 6 4.2098 -3.4921 -0.3017 24 6 5.0940 -3.8687 -1.2953 25 6 5.0330 -5.1428 -1.8282 26 6 4.0869 -6.0397 -1.3685 27 6 3.2030 -5.6631 -0.3745 28 6 3.2647 -4.3894 0.1590 29 1 -0.4850 0.8401 -0.0004 30 1 3.1471 0.4924 -1.5827 31 1 4.8009 -0.1417 -1.4064 32 1 1.6491 -0.5326 -3.5221 33 1 6.4118 -3.6805 -4.1000 34 1 7.5082 -5.3248 -5.5642 35 1 6.3977 -6.0758 -7.6268 36 1 4.1817 -5.1961 -8.2323 37 1 3.0634 -3.5588 -6.7770 38 1 4.0335 -2.1418 1.3414 39 1 5.2827 -1.7039 0.1515 40 1 5.8295 -3.1662 -1.6584 41 1 5.7235 -5.4370 -2.6048 42 1 4.0390 -7.0350 -1.7851 43 1 2.4642 -6.3640 -0.0151 44 1 2.5739 -4.0951 0.9353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069567350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = 107.956124 kcal Electronic energy + Delta-G solvation = -28804.295968 eV Core-core repulsion = 25075.258393 eV Total energy + Delta-G solvation = -3729.037575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.142 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.69011 -39.02849 -38.63152 -36.17567 -34.12527 -32.28385 -32.05790 -31.06629 -30.68403 -30.22422 -28.82644 -26.20642 -25.71600 -23.62318 -22.83656 -22.01669 -21.89873 -20.77545 -20.51731 -20.09588 -17.74368 -16.82473 -16.27566 -16.16912 -15.84774 -15.54958 -15.24040 -14.94947 -14.68108 -14.44193 -13.98004 -13.87261 -13.60298 -13.53167 -13.02299 -12.92736 -12.71287 -12.62912 -12.49285 -12.22509 -11.92323 -11.52682 -11.29784 -11.18769 -10.99726 -10.75114 -10.59835 -10.48745 -10.29709 -10.16104 -9.87806 -9.71921 -9.36431 -9.06221 -8.69910 -8.23258 -8.04430 -7.81234 -6.96144 -6.08664 -3.53917 0.80053 1.29738 2.01125 2.07114 2.27207 3.12862 3.18083 3.24985 3.40391 3.43900 3.85632 4.28388 4.40974 4.43365 4.82312 4.83821 5.00353 5.10549 5.29558 5.33706 5.39704 5.46080 5.48264 5.53036 5.56598 5.61551 5.74789 5.84824 5.91550 6.03190 6.08441 6.17529 6.23842 6.28143 6.31354 6.36957 6.40336 6.50744 6.53070 6.62224 6.67520 6.73241 6.80467 6.89004 7.09918 7.11864 7.40863 7.67734 7.94792 8.24717 8.32789 8.86096 9.59065 9.99343 11.06022 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.004725 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.504320 B = 5924.208743 C = 7181.276218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.038 3.962 3 Si 0.873 3.127 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.266 4.266 8 H 0.080 0.920 9 N -0.585 5.585 10 C 0.208 3.792 11 C -0.006 4.006 12 C -0.056 4.056 13 O -0.205 6.205 14 C 0.197 3.803 15 C 0.006 3.994 16 C -0.075 4.075 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.098 4.098 21 N -0.444 5.444 22 C 0.184 3.816 23 C -0.086 4.086 24 C -0.086 4.086 25 C -0.129 4.129 26 C -0.135 4.135 27 C -0.134 4.134 28 C -0.098 4.098 29 H 0.264 0.736 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.213 0.787 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.461 -8.781 -10.669 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.162 4.162 3 Si 0.703 3.297 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.395 4.395 8 H 0.097 0.903 9 N -0.305 5.305 10 C 0.081 3.919 11 C -0.131 4.131 12 C -0.127 4.127 13 O -0.092 6.092 14 C -0.006 4.006 15 C 0.005 3.995 16 C -0.094 4.094 17 C -0.140 4.140 18 C -0.132 4.132 19 C -0.140 4.140 20 C -0.117 4.117 21 N -0.175 5.175 22 C 0.058 3.942 23 C -0.089 4.089 24 C -0.104 4.104 25 C -0.148 4.148 26 C -0.154 4.154 27 C -0.152 4.152 28 C -0.117 4.117 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.832 -8.801 -10.371 18.028 hybrid contribution -0.806 1.044 -0.451 1.394 sum 11.027 -7.757 -10.822 17.288 Atomic orbital electron populations 1.69860 1.05937 1.26803 1.51093 1.25452 0.95044 0.97632 0.98109 0.86992 0.80954 0.84661 0.77086 1.21305 1.22721 1.18956 1.18772 0.85330 0.94242 1.41118 0.90252 1.44095 1.07725 1.48764 1.29881 1.19754 0.98710 0.91899 0.81497 1.23024 0.91210 0.99584 0.99237 1.24981 1.02582 0.97489 0.87687 1.84408 1.34374 1.46666 1.43734 1.23573 0.83012 0.99263 0.94780 1.17290 0.94173 0.95034 0.92975 1.21178 0.93111 0.95487 0.99653 1.21074 1.00285 0.97804 0.94877 1.21264 0.95306 0.99621 0.96960 1.21021 0.95579 0.97546 0.99816 1.21255 1.00014 0.97074 0.93396 1.70459 1.30762 1.10121 1.06144 1.19928 0.92588 0.86277 0.95408 1.20852 0.94526 0.97065 0.96449 1.21034 0.99108 0.95145 0.95152 1.20946 0.99248 0.94481 1.00088 1.20920 0.97018 0.99057 0.98356 1.21006 0.99348 0.96754 0.98096 1.21056 0.97641 0.92894 1.00074 0.92567 0.91264 0.92203 0.77035 0.84541 0.85455 0.85908 0.85639 0.85427 0.91804 0.93161 0.86130 0.87488 0.87583 0.87292 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.97 55.49 0.78 -25.13 16 2 C 0.04 1.04 5.34 -17.43 -0.09 0.94 16 3 Si 0.87 20.74 24.93 -169.99 -4.24 16.51 16 4 H -0.28 -6.51 6.69 56.52 0.38 -6.13 16 5 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.27 -7.00 9.92 -15.06 -0.15 -7.15 16 8 H 0.08 2.31 7.70 -52.49 -0.40 1.90 16 9 N -0.58 -13.27 2.05 -175.98 -0.36 -13.63 16 10 C 0.21 4.42 5.06 -5.20 -0.03 4.40 16 11 C -0.01 -0.13 6.68 -82.89 -0.55 -0.68 16 12 C -0.06 -1.12 12.08 29.43 0.36 -0.77 16 13 O -0.21 -3.89 10.52 4.09 0.04 -3.85 16 14 C 0.20 3.53 7.90 -13.89 -0.11 3.42 16 15 C 0.01 0.09 5.87 -104.98 -0.62 -0.52 16 16 C -0.08 -0.95 9.23 -39.19 -0.36 -1.31 16 17 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 18 C -0.11 -1.04 10.04 -39.49 -0.40 -1.44 16 19 C -0.12 -1.22 10.03 -39.64 -0.40 -1.62 16 20 C -0.10 -1.24 9.72 -39.18 -0.38 -1.62 16 21 N -0.44 -8.41 8.18 -7.97 -0.07 -8.48 16 22 C 0.18 3.64 5.85 -5.19 -0.03 3.61 16 23 C -0.09 -1.65 5.43 -104.63 -0.57 -2.22 16 24 C -0.09 -1.50 7.82 -39.58 -0.31 -1.81 16 25 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 26 C -0.14 -2.18 10.05 -39.58 -0.40 -2.57 16 27 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 28 C -0.10 -1.87 9.62 -39.59 -0.38 -2.25 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.07 1.55 3.19 -51.93 -0.17 1.38 16 31 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 32 H 0.21 4.00 8.06 -52.48 -0.42 3.58 16 33 H 0.14 1.76 7.83 -52.48 -0.41 1.35 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.56 7.90 -52.49 -0.41 1.14 16 38 H 0.06 1.25 8.06 -51.93 -0.42 0.84 16 39 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 40 H 0.12 2.07 7.30 -52.48 -0.38 1.69 16 41 H 0.11 1.49 7.60 -52.49 -0.40 1.10 16 42 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.12 2.29 7.80 -52.49 -0.41 1.88 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -30.08 370.95 -9.38 -39.45 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.51 Total: 7.94 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -5.61 Total: -18.41 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.35 Total: -47.24 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.24 Total: 16.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.08 -9.38 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069567350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.410 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds