Wall clock time and date at job start Tue Mar 31 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00239 * 2 1 4 4 H 1.48503 * 109.47218 * 270.00356 * 3 2 1 5 5 H 1.48500 * 109.47102 * 30.00605 * 3 2 1 6 6 H 1.48500 * 109.47289 * 150.00096 * 3 2 1 7 7 C 1.37881 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00374 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99607 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46956 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.47003 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54001 * 68.37452 * 12 11 10 14 14 O 1.42094 * 110.54459 * 291.62427 * 12 11 10 15 15 N 1.65607 * 104.44904 * 179.97438 * 12 11 10 16 16 C 1.46924 * 120.63051 * 269.72253 * 15 12 11 17 17 C 1.53187 * 108.77642 * 126.66488 * 16 15 12 18 18 C 1.53041 * 109.31211 * 54.63373 * 17 16 15 19 19 C 1.52994 * 109.46090 * 178.61149 * 18 17 16 20 20 O 1.43752 * 109.62848 * 58.97732 * 19 18 17 21 21 C 1.44593 * 104.91777 * 215.70684 * 20 19 18 22 22 C 1.54910 * 101.63495 * 36.27020 * 21 20 19 23 23 O 1.43363 * 109.63723 * 299.76394 * 19 18 17 24 24 C 1.53038 * 109.53768 * 298.63806 * 18 17 16 25 25 C 1.46926 * 120.62900 * 90.00281 * 15 12 11 26 26 H 0.97002 * 120.00255 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47563 * 60.00173 * 9 7 2 28 28 H 1.09001 * 109.46847 * 299.99331 * 9 7 2 29 29 H 1.08998 * 109.47608 * 59.99521 * 10 9 7 30 30 H 1.09005 * 109.47103 * 299.99292 * 10 9 7 31 31 H 1.09002 * 109.47431 * 60.00166 * 11 10 9 32 32 H 1.08995 * 109.47310 * 299.99465 * 11 10 9 33 33 H 1.09003 * 109.58516 * 246.45688 * 16 15 12 34 34 H 1.09002 * 109.58479 * 6.87847 * 16 15 12 35 35 H 1.08999 * 109.49975 * 294.68379 * 17 16 15 36 36 H 1.08998 * 109.50042 * 174.58459 * 17 16 15 37 37 H 1.09007 * 109.45589 * 58.65622 * 18 17 16 38 38 H 1.09002 * 109.63079 * 179.36817 * 19 18 17 39 39 H 1.08998 * 111.08667 * 278.16031 * 21 20 19 40 40 H 1.08999 * 110.97431 * 154.33041 * 21 20 19 41 41 H 1.09001 * 110.69490 * 205.95943 * 22 21 20 42 42 H 1.08999 * 110.84465 * 82.81965 * 22 21 20 43 43 H 1.08999 * 109.49677 * 301.40907 * 24 18 17 44 44 H 1.09006 * 109.49905 * 181.31860 * 24 18 17 45 45 H 1.09002 * 109.58798 * 353.11753 * 25 15 12 46 46 H 1.08996 * 109.58371 * 113.54735 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 16 2.6588 -6.3660 -0.0007 13 8 3.3565 -6.4262 1.2359 14 8 3.3547 -6.4264 -1.2381 15 7 1.7084 -7.7221 0.0008 16 6 1.2851 -8.3382 1.2657 17 6 -0.2395 -8.4865 1.2561 18 6 -0.6648 -9.2609 0.0065 19 6 -2.1841 -9.4410 0.0109 20 8 -2.8230 -8.1536 0.0392 21 6 -4.0005 -8.3402 0.8574 22 6 -3.4846 -9.3377 1.9244 23 8 -2.5788 -10.1749 1.1775 24 6 -0.2471 -8.4839 -1.2441 25 6 1.2775 -8.3356 -1.2627 26 1 -0.4850 0.8400 0.0004 27 1 0.6239 -2.5568 -0.8902 28 1 0.6247 -2.5571 0.8898 29 1 2.8719 -3.6045 0.8894 30 1 2.8717 -3.6045 -0.8906 31 1 0.8531 -5.0451 -0.8897 32 1 0.8538 -5.0446 0.8903 33 1 1.7472 -9.3203 1.3664 34 1 1.5853 -7.7036 2.0996 35 1 -0.7011 -7.4991 1.2467 36 1 -0.5580 -9.0290 2.1462 37 1 -0.1834 -10.2389 0.0040 38 1 -2.4913 -9.9827 -0.8837 39 1 -4.8153 -8.7749 0.2785 40 1 -4.3087 -7.4014 1.3175 41 1 -4.3069 -9.9265 2.3308 42 1 -2.9566 -8.8143 2.7215 43 1 -0.7085 -7.4965 -1.2299 44 1 -0.5710 -9.0245 -2.1335 45 1 1.5725 -7.6993 -2.0972 46 1 1.7389 -9.3174 -1.3682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069705485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:52 Heat of formation + Delta-G solvation = -177.297827 kcal Electronic energy + Delta-G solvation = -27897.944819 eV Core-core repulsion = 23914.265553 eV Total energy + Delta-G solvation = -3983.679266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91573 -38.37970 -36.93592 -35.72078 -35.31947 -34.63951 -33.34860 -32.16305 -31.26735 -29.92214 -27.77968 -26.16360 -23.79283 -23.63703 -23.54981 -22.51656 -20.75403 -20.07198 -18.76270 -17.77484 -17.53631 -16.87918 -16.57738 -16.28812 -16.11692 -15.69002 -15.12597 -14.84363 -14.53412 -14.44099 -14.23750 -14.06024 -14.00712 -13.59116 -13.41108 -13.01181 -12.58567 -12.55313 -12.33023 -12.21929 -11.93202 -11.88989 -11.74499 -11.73254 -11.39939 -11.37503 -11.18492 -10.91178 -10.83759 -10.78173 -10.73651 -10.54548 -10.40247 -9.92931 -9.88087 -9.45214 -9.20384 -8.88055 -8.39530 -6.04453 -4.07409 0.47968 2.76484 3.08427 3.31179 3.37147 3.41435 3.63435 4.04598 4.20947 4.30652 4.38725 4.43790 4.43900 4.52562 4.59228 4.75740 4.88294 4.94399 5.08120 5.11488 5.20124 5.21814 5.23167 5.28672 5.30431 5.32080 5.48564 5.52477 5.57623 5.59817 5.64502 5.79993 5.92785 5.95896 6.08899 6.18956 6.28518 6.48530 6.54458 6.71626 6.89736 7.58956 7.69131 7.93744 8.34419 8.98852 9.57148 11.06735 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003151 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.956822 B = 8884.408168 C =10429.866439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.607 4.607 12 S 2.598 3.402 13 O -0.961 6.961 14 O -0.961 6.961 15 N -1.004 6.004 16 C 0.123 3.877 17 C -0.129 4.129 18 C -0.095 4.095 19 C 0.236 3.764 20 O -0.369 6.369 21 C 0.016 3.984 22 C 0.020 3.980 23 O -0.384 6.384 24 C -0.130 4.130 25 C 0.124 3.876 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 -23.360 1.400 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.739 4.739 12 S 2.695 3.305 13 O -0.951 6.951 14 O -0.951 6.951 15 N -0.840 5.840 16 C -0.002 4.002 17 C -0.168 4.168 18 C -0.114 4.114 19 C 0.141 3.859 20 O -0.289 6.289 21 C -0.061 4.061 22 C -0.056 4.056 23 O -0.305 6.305 24 C -0.169 4.169 25 C -0.002 4.002 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.136 -23.298 1.345 24.403 hybrid contribution -0.627 1.140 0.033 1.301 sum -7.763 -22.158 1.378 23.519 Atomic orbital electron populations 1.69960 1.06084 1.26731 1.50655 1.25018 0.94882 0.99346 0.95122 0.86558 0.79889 0.83190 0.78188 1.20571 1.21185 1.19740 1.21265 0.93251 0.90920 1.50986 0.92388 1.19054 0.93512 0.90426 0.97703 1.21498 0.99363 0.91805 1.01841 1.30589 1.16344 1.15830 1.11159 1.05464 0.75912 0.74999 0.74127 1.93554 1.70368 1.85885 1.45341 1.93554 1.70424 1.85886 1.45270 1.57888 1.70579 1.44018 1.11563 1.21376 0.94308 0.99393 0.85110 1.21911 0.95772 1.01532 0.97535 1.21550 0.92850 1.00422 0.96562 1.24160 0.92948 0.79998 0.88819 1.89256 1.37828 1.30526 1.71270 1.24354 0.89229 1.01159 0.91353 1.24204 0.93242 0.92816 0.95329 1.88871 1.64738 1.40425 1.36500 1.21918 0.96085 1.01915 0.96967 1.21365 0.94004 0.99533 0.85249 0.92930 0.96131 0.96163 0.91681 0.91664 0.85511 0.85557 0.91226 0.88975 0.90567 0.90584 0.89296 0.89941 0.90732 0.87148 0.88411 0.90408 0.90155 0.90647 0.88833 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 10 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 11 C -0.61 -9.76 6.18 37.16 0.23 -9.53 16 12 S 2.60 40.11 5.41 -107.50 -0.58 39.53 16 13 O -0.96 -17.30 16.72 -57.54 -0.96 -18.26 16 14 O -0.96 -17.24 16.73 -57.54 -0.96 -18.21 16 15 N -1.00 -11.94 3.22 -113.53 -0.37 -12.30 16 16 C 0.12 1.28 6.31 -3.71 -0.02 1.25 16 17 C -0.13 -1.20 5.06 -26.61 -0.13 -1.33 16 18 C -0.09 -0.82 2.26 -90.58 -0.20 -1.02 16 19 C 0.24 2.05 3.66 37.15 0.14 2.19 16 20 O -0.37 -3.62 10.06 -59.05 -0.59 -4.22 16 21 C 0.02 0.11 7.95 38.17 0.30 0.41 16 22 C 0.02 0.13 8.07 38.17 0.31 0.44 16 23 O -0.38 -3.44 10.54 -59.05 -0.62 -4.06 16 24 C -0.13 -1.14 5.21 -26.62 -0.14 -1.28 16 25 C 0.12 1.24 6.31 -3.71 -0.02 1.22 16 26 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.13 1.85 8.14 -51.92 -0.42 1.43 16 32 H 0.13 1.85 8.14 -51.93 -0.42 1.42 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.99 7.09 -51.93 -0.37 0.62 16 35 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 36 H 0.08 0.65 7.66 -51.93 -0.40 0.25 16 37 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.81 7.76 -51.93 -0.40 0.41 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.97 7.11 -51.93 -0.37 0.60 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -35.60 378.05 -10.73 -46.33 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.82 Total: -2.17 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -0.24 Total: -23.04 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.37 Total: -38.28 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -3.14 Total: -44.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 40.11 SS G_CDS: -0.58 Total: 39.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.60 -10.73 -46.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069705485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.968 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds