Wall clock time and date at job start Tue Mar 31 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29944 * 126.29169 * 2 1 4 4 O 1.21294 * 110.25380 * 180.02562 * 3 2 1 5 5 C 1.33648 * 109.81052 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.54919 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46685 * 195.02231 * 6 5 4 8 8 C 1.52999 * 109.47082 * 75.02246 * 6 5 4 9 9 N 1.46903 * 109.47029 * 315.01916 * 6 5 4 10 10 C 1.46957 * 110.99878 * 180.02562 * 9 6 5 11 11 C 1.53051 * 109.36250 * 183.19110 * 10 9 6 12 12 N 1.46956 * 109.36581 * 301.59618 * 11 10 9 13 13 C 1.46895 * 111.00059 * 183.19045 * 12 11 10 14 14 C 1.52994 * 109.47270 * 170.00062 * 13 12 11 15 15 H 1.09009 * 109.47154 * 54.99975 * 14 13 12 16 16 C 1.47200 * 109.47451 * 295.00037 * 14 13 12 17 17 N 9.26300 * 131.01682 * 243.76848 * 2 1 3 18 18 C 1.52996 * 109.47347 * 174.99819 * 14 13 12 19 19 C 1.50702 * 109.47159 * 185.00014 * 18 14 13 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 14 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 14 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.46956 * 110.87500 * 59.32176 * 12 11 10 28 28 C 1.46957 * 111.00272 * 303.80403 * 9 6 5 29 29 N 1.31131 * 106.89547 * 0.22506 * 5 4 3 30 30 H 1.09004 * 109.47408 * 89.97179 * 1 2 3 31 31 H 1.08999 * 109.47302 * 209.97433 * 1 2 3 32 32 H 1.08995 * 109.46756 * 329.97110 * 1 2 3 33 33 H 1.09006 * 109.46612 * 180.02562 * 8 6 5 34 34 H 1.09000 * 109.47348 * 299.99578 * 8 6 5 35 35 H 1.08998 * 109.46926 * 60.00010 * 8 6 5 36 36 H 1.08993 * 109.48947 * 63.22258 * 10 9 6 37 37 H 1.09006 * 109.49126 * 303.15720 * 10 9 6 38 38 H 1.09010 * 109.48409 * 181.62862 * 11 10 9 39 39 H 1.08997 * 109.48820 * 61.57122 * 11 10 9 40 40 H 1.08998 * 109.47324 * 50.00063 * 13 12 11 41 41 H 1.09002 * 109.47421 * 290.00240 * 13 12 11 42 42 H 1.09004 * 109.47066 * 65.00217 * 18 14 13 43 43 H 1.08994 * 109.47405 * 305.00047 * 18 14 13 44 44 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 45 45 H 1.09007 * 109.48937 * 60.65000 * 27 12 11 46 46 H 1.09002 * 109.48568 * 180.70808 * 27 12 11 47 47 H 1.09003 * 109.48520 * 296.77730 * 28 9 6 48 48 H 1.08996 * 109.48913 * 56.84408 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5298 -0.6213 -0.0015 6 6 4.7969 -1.4372 -0.0029 7 1 4.5648 -2.4682 -0.2698 8 6 5.4285 -1.4007 1.3902 9 7 5.7383 -0.8779 -0.9822 10 6 6.9882 -1.6502 -1.0117 11 6 7.9696 -0.9904 -1.9833 12 7 7.3624 -0.9254 -3.3200 13 6 8.3038 -0.3662 -4.2992 14 6 7.7375 -0.5426 -5.7095 15 1 6.7431 -0.0988 -5.7599 16 6 7.6511 -1.9772 -6.0278 17 7 7.5862 -3.0892 -6.2693 18 6 8.6565 0.1492 -6.7184 19 6 8.0371 0.0817 -8.0906 20 1 7.0833 -0.4055 -8.2292 21 6 8.6854 0.6474 -9.1681 22 7 9.8467 1.2409 -8.9992 23 14 7.9141 0.5704 -10.8676 24 1 6.6156 -0.1460 -10.7900 25 1 7.6889 1.9490 -11.3719 26 1 8.8242 -0.1523 -11.7921 27 6 6.1125 -0.1531 -3.2904 28 6 5.1313 -0.8133 -2.3189 29 7 2.3029 -1.0841 -0.0064 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 6.3452 -1.9905 1.3890 34 1 5.6606 -0.3697 1.6571 35 1 4.7299 -1.8157 2.1168 36 1 6.7792 -2.6679 -1.3411 37 1 7.4252 -1.6733 -0.0133 38 1 8.8867 -1.5779 -2.0286 39 1 8.1998 0.0178 -1.6390 40 1 9.2586 -0.8864 -4.2234 41 1 8.4510 0.6947 -4.0969 42 1 9.6243 -0.3521 -6.7315 43 1 8.7913 1.1920 -6.4315 44 1 10.3029 1.6386 -9.7573 45 1 6.3216 0.8647 -2.9610 46 1 5.6756 -0.1300 -4.2888 47 1 4.9014 -1.8218 -2.6630 48 1 4.2141 -0.2262 -2.2739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069871981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:13 Heat of formation + Delta-G solvation = 103.343476 kcal Electronic energy + Delta-G solvation = -28693.217527 eV Core-core repulsion = 24786.682427 eV Total energy + Delta-G solvation = -3906.535100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.85026 -39.81812 -37.44405 -36.32948 -35.61561 -33.82936 -33.15465 -31.89790 -31.40628 -30.44990 -29.37119 -27.50925 -25.90793 -24.69171 -23.64898 -23.39899 -22.50655 -21.64977 -20.93858 -19.89520 -18.42929 -17.66308 -16.84316 -16.62862 -16.29289 -16.17804 -15.15276 -15.01436 -14.79391 -14.60205 -14.41306 -14.24040 -14.06587 -13.92030 -13.41754 -13.10292 -12.89881 -12.86227 -12.70788 -12.60493 -12.34842 -12.20081 -11.99683 -11.91167 -11.66665 -11.51835 -11.39217 -11.33701 -11.20387 -11.10666 -11.05919 -10.96765 -10.65535 -10.50096 -10.18977 -10.09031 -9.54934 -9.21855 -8.81716 -8.47086 -8.24377 -6.10777 -4.13738 0.85970 1.90690 2.49482 3.03735 3.27773 3.36108 3.40671 3.55149 3.69094 3.79240 3.81428 3.91947 4.37623 4.40523 4.51738 4.63066 4.77155 4.84718 4.95432 5.01950 5.05206 5.10103 5.13336 5.18016 5.19612 5.25808 5.27565 5.31852 5.39526 5.54129 5.56282 5.60277 5.64902 5.68690 5.71370 5.80234 5.86765 5.95106 6.03729 6.32853 6.45789 6.52421 6.59119 7.10732 7.11458 7.41617 7.51416 7.84667 7.91563 8.22040 8.57289 8.91155 9.51859 11.00149 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002492 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.798128 B =11231.826503 C =12251.056017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.386 5.386 4 O 0.096 5.904 5 C 0.196 3.804 6 C 0.174 3.826 7 H 0.090 0.910 8 C -0.148 4.148 9 N -0.532 5.532 10 C 0.057 3.943 11 C 0.058 3.942 12 N -0.544 5.544 13 C 0.064 3.936 14 C 0.010 3.990 15 H 0.099 0.901 16 C 0.256 3.744 17 N -0.481 5.481 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.055 3.945 28 C 0.057 3.943 29 N -0.484 5.484 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.038 0.962 44 H 0.262 0.738 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 -1.815 24.085 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 N -0.094 5.094 4 O 0.036 5.964 5 C -0.025 4.025 6 C 0.064 3.936 7 H 0.107 0.893 8 C -0.206 4.206 9 N -0.259 5.259 10 C -0.070 4.070 11 C -0.070 4.070 12 N -0.269 5.269 13 C -0.064 4.064 14 C -0.012 4.012 15 H 0.117 0.883 16 C -0.061 4.061 17 N -0.158 5.158 18 C -0.007 4.007 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.073 4.073 28 C -0.071 4.071 29 N -0.218 5.218 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.068 0.932 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.725 -2.887 23.623 26.530 hybrid contribution -0.268 0.439 -1.067 1.185 sum -11.993 -2.448 22.555 25.663 Atomic orbital electron populations 1.20136 0.82925 1.04572 1.04416 1.25905 1.00609 0.83480 1.00862 1.74677 0.89598 1.23976 1.21112 1.85361 1.21809 1.24417 1.64770 1.28534 0.96218 0.82366 0.95373 1.20109 0.83885 0.93805 0.95847 0.89292 1.21954 1.01497 1.04308 0.92836 1.62275 1.04548 1.52459 1.06583 1.22283 0.89110 0.95605 0.99998 1.22121 0.96622 1.00223 0.88025 1.62203 1.05292 1.52999 1.06379 1.22218 0.95345 0.98811 0.90073 1.19253 1.03362 0.83674 0.94876 0.88323 1.29016 0.91755 0.94526 0.90780 1.81141 1.10219 1.13290 1.11136 1.19177 0.93934 0.95796 0.91831 1.21172 1.06016 1.36670 0.92485 0.92493 1.24952 0.94835 0.95024 0.99168 1.69948 1.14733 1.37121 1.31187 0.86546 0.79526 0.77765 0.84311 1.19681 1.20854 1.20952 1.22191 0.90357 0.95453 0.99311 1.22215 0.96935 1.00528 0.87415 1.71897 0.99562 1.29628 1.20745 0.89250 0.89090 0.89503 0.90039 0.90560 0.91291 0.93281 0.89423 0.89875 0.93500 0.90074 0.92565 0.95538 0.94422 0.92846 0.93258 0.89344 0.93225 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.16 1.77 8.22 -156.37 -1.28 0.49 16 3 N -0.39 -4.73 12.16 30.90 0.38 -4.35 16 4 O 0.10 1.13 11.12 18.09 0.20 1.33 16 5 C 0.20 2.04 5.65 -13.06 -0.07 1.97 16 6 C 0.17 1.43 2.62 -68.86 -0.18 1.25 16 7 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 8 C -0.15 -0.86 8.95 37.16 0.33 -0.53 16 9 N -0.53 -4.93 4.57 -227.88 -1.04 -5.97 16 10 C 0.06 0.48 5.32 -3.77 -0.02 0.46 16 11 C 0.06 0.58 5.61 -3.77 -0.02 0.56 16 12 N -0.54 -6.87 4.41 -234.47 -1.03 -7.90 16 13 C 0.06 0.91 4.32 -3.83 -0.02 0.89 16 14 C 0.01 0.19 2.14 -93.41 -0.20 -0.01 16 15 H 0.10 1.69 6.28 -51.92 -0.33 1.36 16 16 C 0.26 5.27 13.68 -20.64 -0.28 4.99 16 17 N -0.48 -10.80 18.56 42.30 0.79 -10.01 16 18 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 19 C -0.53 -13.89 8.60 -34.44 -0.30 -14.19 16 20 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 23 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.05 0.66 5.42 -3.77 -0.02 0.64 16 28 C 0.06 0.63 5.34 -3.77 -0.02 0.61 16 29 N -0.48 -5.48 11.55 -9.87 -0.11 -5.60 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.36 6.34 -51.93 -0.33 0.03 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.53 6.14 -51.93 -0.32 0.22 16 38 H 0.08 0.78 8.07 -51.92 -0.42 0.36 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 41 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.12 6.25 -51.93 -0.32 0.80 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.79 6.72 -51.93 -0.35 0.44 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -32.02 392.31 -8.64 -40.65 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -7.51 Total: -4.96 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.92 Total: -0.72 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.29 Total: -58.48 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.02 -8.64 -40.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069871981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.997 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds