Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29953 * 126.28636 * 2 1 4 4 O 1.21304 * 110.25085 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.81021 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.55250 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47576 * 161.75894 * 6 5 4 8 8 C 1.53005 * 109.47204 * 281.75969 * 6 5 4 9 9 N 1.46900 * 109.47182 * 41.75766 * 6 5 4 10 10 C 1.46951 * 111.00236 * 185.84763 * 9 6 5 11 11 C 1.53050 * 109.36542 * 176.81270 * 10 9 6 12 12 N 1.46961 * 109.36459 * 58.40216 * 11 10 9 13 13 C 1.46900 * 111.00235 * 176.81175 * 12 11 10 14 14 C 1.52998 * 109.47106 * 199.00958 * 13 12 11 15 15 H 1.08996 * 109.47185 * 305.79405 * 14 13 12 16 16 C 1.47203 * 109.47289 * 65.79427 * 14 13 12 17 17 N 9.64697 * 137.00708 * 119.17281 * 2 1 3 18 18 C 1.53003 * 109.46841 * 185.79385 * 14 13 12 19 19 C 1.50702 * 109.46902 * 174.99977 * 18 14 13 20 20 H 1.07996 * 119.99871 * 0.02562 * 19 18 14 21 21 C 1.37876 * 119.99897 * 179.97438 * 19 18 14 22 22 N 1.31516 * 120.00025 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00178 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.46816 * 89.99737 * 23 21 19 25 25 H 1.48494 * 109.47122 * 209.99870 * 23 21 19 26 26 H 1.48506 * 109.46852 * 330.00090 * 23 21 19 27 27 C 1.46951 * 110.87910 * 300.67985 * 12 11 10 28 28 C 1.46961 * 110.99852 * 62.04914 * 9 6 5 29 29 N 1.31135 * 106.90107 * 0.02562 * 5 4 3 30 30 H 1.08997 * 109.47433 * 270.03038 * 1 2 3 31 31 H 1.09005 * 109.47089 * 30.02915 * 1 2 3 32 32 H 1.08997 * 109.46883 * 150.02512 * 1 2 3 33 33 H 1.09006 * 109.46681 * 59.99622 * 8 6 5 34 34 H 1.08994 * 109.47122 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47227 * 299.99867 * 8 6 5 36 36 H 1.09002 * 109.49117 * 296.77766 * 10 9 6 37 37 H 1.09002 * 109.49356 * 56.84570 * 10 9 6 38 38 H 1.08996 * 109.49272 * 298.43253 * 11 10 9 39 39 H 1.09005 * 109.50969 * 178.37956 * 11 10 9 40 40 H 1.09007 * 109.46892 * 319.00894 * 13 12 11 41 41 H 1.08999 * 109.47109 * 79.00831 * 13 12 11 42 42 H 1.09007 * 109.47037 * 294.99882 * 18 14 13 43 43 H 1.08995 * 109.47687 * 54.99755 * 18 14 13 44 44 H 0.96997 * 119.99909 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.49117 * 299.35568 * 27 12 11 46 46 H 1.09002 * 109.49356 * 179.28764 * 27 12 11 47 47 H 1.09004 * 109.48706 * 303.15678 * 28 9 6 48 48 H 1.08996 * 109.48666 * 63.19875 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0015 6 6 4.7969 -1.4369 0.0029 7 1 4.5739 -2.4540 0.3250 8 6 5.3859 -1.4668 -1.4090 9 7 5.7673 -0.8328 0.9255 10 6 7.0640 -1.5201 0.8503 11 6 8.0670 -0.8129 1.7648 12 7 7.5541 -0.8116 3.1419 13 6 8.5244 -0.2074 4.0646 14 6 8.1992 -0.6336 5.4976 15 1 7.1604 -0.3911 5.7219 16 6 8.4055 -2.0844 5.6369 17 7 8.5631 -3.2066 5.7439 18 6 9.1176 0.1080 6.4711 19 6 8.7167 -0.2176 7.8868 20 1 7.8899 -0.8868 8.0736 21 6 9.4062 0.3380 8.9436 22 7 9.0567 0.0535 10.1792 23 14 10.8368 1.4950 8.6206 24 1 10.3357 2.8903 8.5367 25 1 11.8200 1.3878 9.7283 26 1 11.4920 1.1265 7.3398 27 6 6.2574 -0.1243 3.2171 28 6 5.2543 -0.8314 2.3027 29 7 2.3030 -1.0841 0.0009 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 5.6090 -0.4496 -1.7311 34 1 6.3025 -2.0565 -1.4079 35 1 4.6659 -1.9151 -2.0936 36 1 6.9462 -2.5551 1.1714 37 1 7.4290 -1.4969 -0.1765 38 1 8.2055 0.2142 1.4273 39 1 9.0218 -1.3380 1.7329 40 1 9.5291 -0.5416 3.8053 41 1 8.4715 0.8786 3.9876 42 1 10.1493 -0.2023 6.3051 43 1 9.0303 1.1819 6.3066 44 1 9.5415 0.4447 10.9226 45 1 6.3752 0.9107 2.8961 46 1 5.8924 -0.1475 4.2440 47 1 4.2998 -0.3060 2.3346 48 1 5.1156 -1.8586 2.6400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069871985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = 107.435349 kcal Electronic energy + Delta-G solvation = -28662.601540 eV Core-core repulsion = 24756.243877 eV Total energy + Delta-G solvation = -3906.357664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.85267 -39.86556 -37.50434 -36.34721 -35.70017 -33.87946 -33.14872 -31.97669 -31.47755 -30.56524 -29.38940 -27.84803 -26.10061 -24.74251 -23.69504 -23.36239 -22.43403 -21.45779 -20.97176 -19.91827 -18.42449 -17.68710 -16.95630 -16.83214 -16.53190 -16.19634 -15.28464 -15.07255 -14.78680 -14.69192 -14.34590 -14.22775 -13.94821 -13.90825 -13.45413 -13.26462 -13.02533 -12.92927 -12.78219 -12.63094 -12.43990 -12.25124 -12.15119 -12.01867 -11.74474 -11.62932 -11.44250 -11.35360 -11.32039 -11.19404 -11.15076 -11.04753 -10.67237 -10.37900 -10.15865 -9.92567 -9.75064 -9.32972 -8.85753 -8.62385 -8.31800 -6.11190 -4.11905 0.85126 1.89528 2.48827 2.99957 3.25278 3.34247 3.34769 3.54159 3.65526 3.75518 3.81058 3.85817 4.34389 4.37614 4.48087 4.59134 4.74401 4.75606 4.90150 5.00736 5.02658 5.06292 5.10193 5.13892 5.15337 5.22438 5.23605 5.27976 5.36101 5.48436 5.51929 5.55041 5.57449 5.66237 5.67437 5.74642 5.79898 5.86149 5.93391 6.16797 6.29675 6.45988 6.55562 6.91231 7.02126 7.03125 7.13576 7.63176 7.90663 8.40049 8.54211 8.92519 9.48614 11.01942 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002428 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.005057 B =11531.531974 C =12193.540980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.387 5.387 4 O 0.096 5.904 5 C 0.197 3.803 6 C 0.174 3.826 7 H 0.090 0.910 8 C -0.150 4.150 9 N -0.533 5.533 10 C 0.056 3.944 11 C 0.059 3.941 12 N -0.543 5.543 13 C 0.061 3.939 14 C 0.023 3.977 15 H 0.104 0.896 16 C 0.254 3.746 17 N -0.474 5.474 18 C -0.005 4.005 19 C -0.527 4.527 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.264 1.264 27 C 0.056 3.944 28 C 0.056 3.944 29 N -0.484 5.484 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.032 0.968 44 H 0.264 0.736 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 1.172 -26.544 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 N -0.095 5.095 4 O 0.037 5.963 5 C -0.024 4.024 6 C 0.064 3.936 7 H 0.108 0.892 8 C -0.208 4.208 9 N -0.260 5.260 10 C -0.071 4.071 11 C -0.070 4.070 12 N -0.268 5.268 13 C -0.068 4.068 14 C 0.001 3.999 15 H 0.122 0.878 16 C -0.063 4.063 17 N -0.151 5.151 18 C -0.044 4.044 19 C -0.565 4.565 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.535 5.535 23 Si 0.704 3.296 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.072 4.072 28 C -0.071 4.071 29 N -0.219 5.219 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.030 0.022 -26.192 28.419 hybrid contribution 0.707 1.035 0.180 1.266 sum -10.323 1.057 -26.012 28.005 Atomic orbital electron populations 1.20135 0.82929 1.04573 1.04417 1.25904 1.00605 0.83482 1.00855 1.74684 0.89620 1.23993 1.21170 1.85360 1.21766 1.24422 1.64727 1.28545 0.96186 0.82337 0.95352 1.20071 0.83890 0.93439 0.96237 0.89210 1.21993 1.01852 1.04192 0.92752 1.62208 1.02895 1.54218 1.06652 1.22298 0.87996 0.96500 1.00283 1.22143 0.97260 0.99880 0.87687 1.62154 1.03483 1.54983 1.06175 1.22249 0.95674 0.97771 0.91079 1.18948 1.03498 0.82955 0.94523 0.87832 1.28807 0.92051 0.94525 0.90901 1.81093 1.10029 1.13294 1.10641 1.19646 0.94745 0.95401 0.94656 1.21021 1.17814 1.29492 0.88197 0.90814 1.24997 0.96980 0.96185 0.94974 1.69906 1.41054 1.44175 0.98374 0.86818 0.82834 0.81522 0.78393 1.20054 1.21322 1.18836 1.22191 0.89190 0.95945 0.99851 1.22221 0.97591 1.00540 0.86784 1.71894 0.99556 1.29621 1.20802 0.89242 0.89516 0.89085 0.90597 0.89942 0.91183 0.93193 0.89324 0.93556 0.89903 0.90214 0.92400 0.95670 0.94957 0.92564 0.93335 0.89278 0.91188 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.00 0.38 -0.03 16 2 C 0.16 1.73 8.22 -156.37 -1.28 0.45 16 3 N -0.39 -4.64 12.16 30.90 0.38 -4.27 16 4 O 0.10 1.11 11.30 18.11 0.20 1.32 16 5 C 0.20 2.00 5.87 -13.05 -0.08 1.92 16 6 C 0.17 1.38 2.62 -68.86 -0.18 1.20 16 7 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.15 -0.84 8.76 37.16 0.33 -0.51 16 9 N -0.53 -4.71 4.57 -227.87 -1.04 -5.75 16 10 C 0.06 0.45 5.18 -3.77 -0.02 0.43 16 11 C 0.06 0.55 5.57 -3.76 -0.02 0.53 16 12 N -0.54 -6.47 4.37 -234.46 -1.02 -7.49 16 13 C 0.06 0.80 4.35 -3.83 -0.02 0.78 16 14 C 0.02 0.39 2.26 -93.40 -0.21 0.18 16 15 H 0.10 1.73 6.68 -51.93 -0.35 1.38 16 16 C 0.25 5.15 13.69 -20.68 -0.28 4.87 16 17 N -0.47 -10.59 18.55 42.24 0.78 -9.81 16 18 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 19 C -0.53 -14.10 9.15 -34.44 -0.32 -14.41 16 20 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 21 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 23 Si 0.88 20.50 27.47 -169.99 -4.67 15.83 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 27 C 0.06 0.63 5.43 -3.77 -0.02 0.61 16 28 C 0.06 0.59 5.41 -3.76 -0.02 0.57 16 29 N -0.48 -5.36 11.55 -9.86 -0.11 -5.48 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.34 6.26 -51.93 -0.32 0.02 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.51 6.03 -51.93 -0.31 0.20 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.74 8.00 -51.93 -0.42 0.33 16 40 H 0.08 1.02 7.85 -51.92 -0.41 0.61 16 41 H 0.06 0.69 8.00 -51.93 -0.42 0.27 16 42 H 0.03 0.54 7.20 -51.93 -0.37 0.16 16 43 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.04 6.67 -51.93 -0.35 0.70 16 47 H 0.07 0.76 7.04 -51.93 -0.37 0.39 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -33.25 389.53 -8.29 -41.54 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.51 Total: -3.78 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.94 Total: -1.74 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.25 Total: -59.03 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.25 -8.29 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069871985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.971 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds