Wall clock time and date at job start Tue Mar 31 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39874 * 125.89807 * 2 1 4 4 C 1.35314 * 107.91952 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.13012 * 179.97438 * 4 3 2 6 6 N 1.34947 * 107.74646 * 0.02562 * 4 3 2 7 7 C 1.46506 * 126.03691 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46760 * 94.04161 * 7 6 4 9 9 H 1.08996 * 109.88360 * 303.23907 * 8 7 6 10 10 C 1.54317 * 109.89116 * 64.44352 * 8 7 6 11 11 C 1.55144 * 103.01865 * 141.68594 * 10 8 7 12 12 C 1.54902 * 101.65649 * 324.34564 * 11 10 8 13 13 N 1.47452 * 109.88766 * 182.21006 * 8 7 6 14 14 C 1.46901 * 110.99669 * 3.85161 * 13 8 7 15 15 C 1.50698 * 109.47196 * 173.82986 * 14 13 8 16 16 O 1.21286 * 119.99827 * 0.68002 * 15 14 13 17 17 N 1.34775 * 120.00475 * 180.67039 * 15 14 13 18 18 C 1.46500 * 119.99586 * 5.11048 * 17 15 14 19 19 C 1.46498 * 120.00391 * 185.10536 * 17 15 14 20 20 C 1.50696 * 109.47097 * 270.00320 * 19 17 15 21 21 H 1.08001 * 120.00009 * 359.97438 * 20 19 17 22 22 C 1.37882 * 120.00166 * 179.97438 * 20 19 17 23 23 N 1.31518 * 119.99589 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00148 * 179.72271 * 22 20 19 25 25 H 1.48502 * 109.47206 * 90.00172 * 24 22 20 26 26 H 1.48499 * 109.47194 * 209.99828 * 24 22 20 27 27 H 1.48497 * 109.47160 * 330.00398 * 24 22 20 28 28 N 1.30842 * 125.89926 * 180.29713 * 2 1 3 29 29 H 1.09002 * 109.47053 * 89.99743 * 1 2 3 30 30 H 1.08993 * 109.47576 * 210.00300 * 1 2 3 31 31 H 1.09008 * 109.47126 * 330.00400 * 1 2 3 32 32 H 1.07995 * 126.04060 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47186 * 274.65016 * 5 4 3 34 34 H 1.09004 * 109.46932 * 34.64965 * 5 4 3 35 35 H 1.08996 * 109.47778 * 154.64941 * 5 4 3 36 36 H 1.08996 * 109.47532 * 334.04082 * 7 6 4 37 37 H 1.09007 * 109.46881 * 214.03931 * 7 6 4 38 38 H 1.08996 * 110.70861 * 260.07141 * 10 8 7 39 39 H 1.09000 * 110.70515 * 23.13288 * 10 8 7 40 40 H 1.08998 * 110.98945 * 82.44050 * 11 10 8 41 41 H 1.09003 * 110.98865 * 206.25147 * 11 10 8 42 42 H 1.09002 * 110.37366 * 278.24456 * 12 11 10 43 43 H 1.08994 * 110.37850 * 155.90016 * 12 11 10 44 44 H 1.09011 * 109.47173 * 53.83491 * 14 13 8 45 45 H 1.09003 * 109.47565 * 293.83615 * 14 13 8 46 46 H 1.09012 * 109.47235 * 267.31068 * 18 17 15 47 47 H 1.09001 * 109.47525 * 27.31154 * 18 17 15 48 48 H 1.09000 * 109.47154 * 147.31549 * 18 17 15 49 49 H 1.08996 * 109.47242 * 150.00125 * 19 17 15 50 50 H 1.08994 * 109.47214 * 30.00134 * 19 17 15 51 51 H 0.96996 * 119.99531 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0002 6 7 3.6087 -0.6341 0.0004 7 6 4.7899 -1.5008 0.0003 8 6 5.1408 -1.8846 1.4392 9 1 5.2968 -0.9855 2.0352 10 6 4.0041 -2.7319 2.0486 11 6 4.7679 -3.7852 2.8936 12 6 6.0223 -4.0372 2.0204 13 7 6.3599 -2.7139 1.4540 14 6 6.9222 -2.8474 0.1034 15 6 8.2426 -3.5698 0.1782 16 8 8.6670 -3.9482 1.2495 17 7 8.9519 -3.7955 -0.9454 18 6 8.4959 -3.2422 -2.2230 19 6 10.1788 -4.5941 -0.8892 20 6 11.3556 -3.6894 -0.6294 21 1 11.2047 -2.6258 -0.5177 22 6 12.6249 -4.2194 -0.5342 23 7 12.8084 -5.5147 -0.6697 24 14 14.0846 -3.0970 -0.2198 25 1 14.2997 -2.9629 1.2434 26 1 15.2990 -3.6768 -0.8476 27 1 13.8153 -1.7591 -0.8052 28 7 2.2742 -1.0599 -0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.9923 2.1598 -0.0004 33 1 5.0808 1.8787 -1.0242 34 1 4.6336 2.4972 0.5839 35 1 5.6738 1.0599 0.4408 36 1 5.6295 -0.9707 -0.4494 37 1 4.5790 -2.4022 -0.5752 38 1 3.3643 -2.1190 2.6834 39 1 3.4194 -3.2133 1.2647 40 1 5.0445 -3.3792 3.8666 41 1 4.1804 -4.6966 3.0054 42 1 5.7938 -4.7442 1.2230 43 1 6.8434 -4.4080 2.6338 44 1 7.0737 -1.8572 -0.3266 45 1 6.2330 -3.4139 -0.5229 46 1 7.8744 -3.9763 -2.7358 47 1 7.9149 -2.3381 -2.0407 48 1 9.3592 -3.0005 -2.8430 49 1 10.3200 -5.1104 -1.8387 50 1 10.0992 -5.3264 -0.0858 51 1 13.7014 -5.8874 -0.6031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070003749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:00 Heat of formation + Delta-G solvation = 56.331877 kcal Electronic energy + Delta-G solvation = -29702.896908 eV Core-core repulsion = 25832.437664 eV Total energy + Delta-G solvation = -3870.459244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56591 -39.94442 -38.23461 -34.84720 -34.35201 -32.77654 -32.35627 -32.17811 -30.55618 -28.28184 -28.00644 -27.18349 -26.54260 -25.42634 -24.79706 -22.69337 -21.49527 -20.62697 -20.10348 -19.49980 -18.29265 -17.24141 -16.55792 -16.29198 -15.93886 -15.71581 -15.29385 -15.00354 -14.87696 -14.53186 -14.15504 -14.05812 -13.72864 -13.56058 -13.44801 -13.24096 -12.92725 -12.80421 -12.70849 -12.63069 -12.25069 -12.21883 -12.16683 -12.04963 -11.92196 -11.75368 -11.33285 -11.20710 -11.14397 -11.01088 -10.86616 -10.74009 -10.62656 -10.59066 -10.15329 -9.62688 -9.25433 -8.94712 -8.70537 -8.43559 -8.18675 -7.65285 -6.04443 -4.08790 1.68203 2.25265 2.59708 3.31415 3.35011 3.37751 3.42056 3.61671 4.04983 4.26788 4.34990 4.41661 4.45142 4.56654 4.64772 4.78612 4.84983 4.94960 5.10845 5.11207 5.13499 5.21504 5.26446 5.30011 5.32588 5.36049 5.41246 5.44375 5.48484 5.56549 5.59872 5.62949 5.66543 5.78997 5.85078 5.87289 5.91562 6.02841 6.14654 6.17533 6.29884 6.52510 6.76576 6.85717 6.95532 7.09516 7.41333 7.53101 7.60210 7.91999 8.23043 8.39543 8.90710 9.09956 9.56227 11.03694 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.002621 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.698189 B =10681.225177 C =11363.655261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.068 3.932 3 C -0.277 4.277 4 C 0.088 3.912 5 C -0.097 4.097 6 N -0.361 5.361 7 C 0.112 3.888 8 C 0.060 3.940 9 H 0.091 0.909 10 C -0.128 4.128 11 C -0.131 4.131 12 C 0.049 3.951 13 N -0.496 5.496 14 C 0.021 3.979 15 C 0.505 3.495 16 O -0.519 6.519 17 N -0.606 5.606 18 C 0.084 3.916 19 C 0.248 3.752 20 C -0.523 4.523 21 H 0.057 0.943 22 C 0.060 3.940 23 N -0.896 5.896 24 Si 0.898 3.102 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.275 1.275 28 N -0.293 5.293 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.032 0.968 50 H 0.042 0.958 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.297 11.855 -0.526 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C -0.306 4.306 4 C -0.039 4.039 5 C -0.156 4.156 6 N -0.144 5.144 7 C -0.010 4.010 8 C -0.050 4.050 9 H 0.108 0.892 10 C -0.166 4.166 11 C -0.169 4.169 12 C -0.078 4.078 13 N -0.221 5.221 14 C -0.111 4.111 15 C 0.290 3.710 16 O -0.395 6.395 17 N -0.339 5.339 18 C -0.060 4.060 19 C 0.129 3.871 20 C -0.562 4.562 21 H 0.075 0.925 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.200 1.200 28 N -0.115 5.115 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.050 0.950 50 H 0.060 0.940 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.339 10.357 0.327 24.625 hybrid contribution 0.372 1.151 -0.585 1.343 sum -21.967 11.508 -0.258 24.800 Atomic orbital electron populations 1.20142 0.86938 1.03094 1.02745 1.22288 0.96809 0.90909 0.99822 1.21063 0.90963 0.99625 1.18921 1.21134 0.97355 0.84680 1.00753 1.20507 0.93180 0.98314 1.03561 1.48493 1.05128 1.03899 1.56865 1.22591 0.84098 0.95101 0.99217 1.22908 0.89675 0.98249 0.94129 0.89152 1.22757 0.96769 0.97380 0.99694 1.22753 0.96140 0.98846 0.99146 1.23138 0.97673 0.89192 0.97832 1.63607 1.24711 1.14211 1.19523 1.22433 0.96098 1.01439 0.91095 1.20031 0.85459 0.80905 0.84612 1.90670 1.70215 1.50891 1.27700 1.48155 1.26693 1.52739 1.06334 1.21626 1.00231 0.97113 0.87078 1.19260 0.79147 0.90708 0.97997 1.21417 0.91495 0.94174 1.49138 0.92481 1.24942 0.98938 0.95136 0.95168 1.69932 1.22559 1.10905 1.50115 0.86495 0.81741 0.80591 0.78562 1.20522 1.21184 1.19965 1.77324 0.86231 1.22573 1.25411 0.90755 0.91089 0.90621 0.83880 0.90047 0.89571 0.90790 0.88110 0.88653 0.91202 0.90732 0.90637 0.90784 0.93875 0.88163 0.88395 0.92261 0.93811 0.92838 0.90673 0.95045 0.94020 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.00 0.38 -0.13 16 2 C 0.07 0.72 7.22 -82.40 -0.59 0.12 16 3 C -0.28 -2.72 10.65 -40.01 -0.43 -3.15 16 4 C 0.09 0.88 6.93 -82.27 -0.57 0.31 16 5 C -0.10 -0.69 9.96 36.00 0.36 -0.33 16 6 N -0.36 -4.03 3.39 -57.14 -0.19 -4.23 16 7 C 0.11 1.16 4.19 -4.04 -0.02 1.14 16 8 C 0.06 0.69 3.70 -66.72 -0.25 0.45 16 9 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 10 C -0.13 -1.44 5.91 -24.91 -0.15 -1.58 16 11 C -0.13 -1.51 7.08 -24.59 -0.17 -1.68 16 12 C 0.05 0.70 5.58 -2.30 -0.01 0.69 16 13 N -0.50 -7.15 4.94 -224.78 -1.11 -8.26 16 14 C 0.02 0.29 2.83 -4.98 -0.01 0.28 16 15 C 0.50 10.22 7.43 -10.99 -0.08 10.14 16 16 O -0.52 -12.83 14.35 5.55 0.08 -12.75 16 17 N -0.61 -12.56 2.86 -182.96 -0.52 -13.08 16 18 C 0.08 1.27 10.25 59.85 0.61 1.88 16 19 C 0.25 6.44 5.14 -5.20 -0.03 6.41 16 20 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 24 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 28 N -0.29 -3.62 12.24 33.67 0.41 -3.21 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.54 7.42 -51.93 -0.39 0.15 16 36 H 0.10 0.91 5.50 -51.93 -0.29 0.62 16 37 H 0.10 1.00 6.97 -51.93 -0.36 0.64 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.88 7.81 -51.93 -0.41 0.47 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 43 H 0.10 1.72 7.18 -51.93 -0.37 1.35 16 44 H 0.10 1.19 5.31 -51.92 -0.28 0.92 16 45 H 0.06 0.74 6.78 -51.93 -0.35 0.39 16 46 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.05 0.63 6.35 -51.93 -0.33 0.30 16 48 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 49 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 50 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 51 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 404.33 15.07 6.09 6.09 Total: -1.00 -34.73 404.33 -9.50 -44.23 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.59 Total: -0.83 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.38 Total: 1.02 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.68 Total: -54.70 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.73 -9.50 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070003749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.563 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds