Wall clock time and date at job start Tue Mar 31 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 116.99896 * 2 1 4 4 O 1.21461 * 120.00102 * 359.97438 * 3 2 1 5 5 C 1.47739 * 119.99868 * 179.97438 * 3 2 1 6 6 C 1.39758 * 120.08305 * 359.97274 * 5 3 2 7 7 C 1.38037 * 120.14610 * 180.02562 * 6 5 3 8 8 C 1.38110 * 120.29685 * 359.74011 * 7 6 5 9 9 C 1.39667 * 120.15903 * 0.51560 * 8 7 6 10 10 C 1.47859 * 120.07813 * 179.76429 * 9 8 7 11 11 O 1.21546 * 120.00404 * 203.08805 * 10 9 8 12 12 N 1.34781 * 119.99518 * 23.08838 * 10 9 8 13 13 C 1.46498 * 119.99943 * 1.22167 * 12 10 9 14 14 C 1.50703 * 109.47296 * 259.87937 * 13 12 10 15 15 H 1.07995 * 119.99997 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99729 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00252 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99785 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46932 * 60.00245 * 18 16 14 20 20 H 1.48495 * 109.47005 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47127 * 299.99987 * 18 16 14 22 22 C 1.46502 * 119.99729 * 181.22974 * 12 10 9 23 23 C 1.53002 * 109.46672 * 270.11927 * 22 12 10 24 24 C 1.52999 * 109.47208 * 55.15319 * 23 22 12 25 25 C 1.52999 * 109.47061 * 175.14906 * 23 22 12 26 26 C 1.53004 * 109.47105 * 295.14785 * 23 22 12 27 27 C 1.39328 * 119.85515 * 359.49043 * 9 8 7 28 28 H 1.08997 * 109.46450 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47084 * 300.00617 * 1 2 3 30 30 H 1.08997 * 109.46657 * 60.00926 * 1 2 3 31 31 H 1.08003 * 119.92842 * 0.04273 * 6 5 3 32 32 H 1.07999 * 119.85162 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.92088 * 180.25420 * 8 7 6 34 34 H 1.08995 * 109.47390 * 19.88447 * 13 12 10 35 35 H 1.09001 * 109.46626 * 139.88077 * 13 12 10 36 36 H 0.97001 * 120.00340 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47371 * 30.12191 * 22 12 10 38 38 H 1.09002 * 109.47018 * 150.12115 * 22 12 10 39 39 H 1.08994 * 109.47650 * 63.30831 * 24 23 22 40 40 H 1.09001 * 109.47398 * 183.31550 * 24 23 22 41 41 H 1.09006 * 109.47024 * 303.30843 * 24 23 22 42 42 H 1.09006 * 109.47201 * 60.00297 * 25 23 22 43 43 H 1.09001 * 109.47249 * 179.97438 * 25 23 22 44 44 H 1.08996 * 109.47427 * 300.00482 * 25 23 22 45 45 H 1.09000 * 109.46709 * 60.00438 * 26 23 22 46 46 H 1.08997 * 109.46685 * 180.02562 * 26 23 22 47 47 H 1.08994 * 109.47375 * 300.00310 * 26 23 22 48 48 H 1.08003 * 120.15005 * 180.23689 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3018 0.1066 0.0017 7 6 5.6804 0.1773 0.0028 8 6 6.3151 1.4039 -0.0027 9 6 5.5651 2.5821 0.0016 10 6 6.2465 3.8943 0.0010 11 8 5.6688 4.8794 0.4171 12 7 7.5084 3.9981 -0.4610 13 6 8.1953 2.8160 -0.9874 14 6 9.1246 2.2653 0.0635 15 1 9.1960 2.7474 1.0272 16 6 9.8834 1.1461 -0.2054 17 7 9.7967 0.5593 -1.3792 18 14 11.0358 0.4640 1.0969 19 1 10.2535 0.0861 2.3012 20 1 11.7328 -0.7335 0.5629 21 1 12.0377 1.4976 1.4617 22 6 8.1932 5.2930 -0.4367 23 6 7.9223 6.0377 -1.7454 24 6 6.4123 6.1535 -1.9632 25 6 8.5357 7.4375 -1.6720 26 6 8.5481 5.2671 -2.9097 27 6 4.1733 2.5183 0.0006 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 3.8117 -0.8558 0.0014 32 1 6.2652 -0.7306 0.0032 33 1 7.3941 1.4521 -0.0060 34 1 7.4597 2.0576 -1.2553 35 1 8.7698 3.0932 -1.8712 36 1 10.3304 -0.2283 -1.5683 37 1 7.8232 5.8840 0.4011 38 1 9.2658 5.1347 -0.3239 39 1 5.9748 6.7525 -1.1647 40 1 6.2193 6.6316 -2.9236 41 1 5.9670 5.1586 -1.9568 42 1 9.6115 7.3551 -1.5169 43 1 8.3431 7.9679 -2.6046 44 1 8.0900 7.9865 -0.8426 45 1 8.1110 4.2700 -2.9620 46 1 8.3554 5.7980 -3.8420 47 1 9.6238 5.1847 -2.7545 48 1 3.5887 3.4264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071185193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:02 Heat of formation + Delta-G solvation = -77.497279 kcal Electronic energy + Delta-G solvation = -29839.555705 eV Core-core repulsion = 25860.593258 eV Total energy + Delta-G solvation = -3978.962446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53449 -39.91184 -38.04816 -36.51380 -36.32706 -34.84863 -32.58673 -31.26812 -30.70109 -28.16623 -27.63938 -26.93304 -26.73995 -25.94961 -23.86698 -23.27588 -22.33003 -20.83456 -19.54928 -18.31443 -17.46520 -17.02117 -16.80167 -16.31309 -16.23943 -15.57736 -15.43022 -14.99120 -14.56919 -14.17795 -14.10820 -13.68853 -13.57861 -13.45219 -13.30608 -13.09938 -12.76166 -12.50583 -12.32272 -12.18675 -12.09620 -11.87983 -11.79232 -11.28692 -11.20615 -11.10726 -11.01515 -10.95779 -10.83474 -10.68000 -10.52215 -10.39899 -10.31206 -10.18146 -9.86518 -9.76224 -9.10339 -8.86190 -8.67530 -8.37382 -7.74307 -6.40786 -4.51409 0.97409 1.42237 2.69086 2.70528 3.13009 3.19029 3.21861 3.48786 3.84611 4.14728 4.29885 4.81957 4.89036 5.00794 5.08394 5.08591 5.20866 5.23703 5.24558 5.36470 5.40252 5.46515 5.71132 5.80615 5.88929 5.89764 5.94962 6.09417 6.16508 6.21304 6.23511 6.26033 6.31010 6.38580 6.40242 6.49698 6.51430 6.58493 6.59156 6.80004 6.84106 6.85557 6.92194 7.10876 7.28320 7.44190 7.54947 7.80197 7.81907 8.25261 8.59687 8.92970 9.17344 10.62284 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009234 B = 0.004574 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.547519 B = 6119.730621 C = 8527.074306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.511 6.511 5 C -0.162 4.162 6 C -0.046 4.046 7 C -0.149 4.149 8 C -0.064 4.064 9 C -0.150 4.150 10 C 0.557 3.443 11 O -0.562 6.562 12 N -0.583 5.583 13 C 0.201 3.799 14 C -0.549 4.549 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.877 5.877 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.132 3.868 23 C -0.084 4.084 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.002 4.002 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.220 0.780 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.271 0.729 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -0.223 -0.889 7.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.360 3.640 4 O -0.400 6.400 5 C -0.163 4.163 6 C -0.064 4.064 7 C -0.167 4.167 8 C -0.080 4.080 9 C -0.153 4.153 10 C 0.346 3.654 11 O -0.444 6.444 12 N -0.311 5.311 13 C 0.082 3.918 14 C -0.587 4.587 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.513 5.513 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.199 1.199 22 C 0.008 3.992 23 C -0.085 4.085 24 C -0.187 4.187 25 C -0.194 4.194 26 C -0.199 4.199 27 C -0.021 4.021 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.087 0.416 -0.813 8.139 hybrid contribution 0.443 -0.568 0.557 0.911 sum -7.644 -0.153 -0.255 7.650 Atomic orbital electron populations 1.23238 0.76412 1.03485 1.02536 1.86549 1.23213 1.32959 1.84636 1.21267 0.89193 0.81194 0.72331 1.90818 1.66832 1.36004 1.46388 1.18785 0.88433 0.94912 1.14219 1.21604 0.94392 0.97304 0.93127 1.21267 0.93554 0.98958 1.02896 1.24385 1.07572 0.90524 0.85551 1.19946 0.93053 0.94601 1.07709 1.18081 0.81811 0.87538 0.77928 1.90687 1.65953 1.38388 1.49355 1.47974 1.12708 1.10713 1.59719 1.20488 0.93237 0.82748 0.95363 1.21435 1.24011 1.12414 1.00812 0.91456 1.25007 0.96328 0.96414 0.95722 1.69915 1.39881 1.20510 1.20953 0.86554 0.80966 0.78586 0.81592 1.19706 1.20911 1.19861 1.21383 0.97501 0.83945 0.96335 1.20948 0.96139 0.95086 0.96344 1.21821 0.94668 1.01932 1.00274 1.21786 1.00429 0.95804 1.01336 1.21995 1.00678 1.00743 0.96532 1.21237 0.93477 0.96714 0.90696 0.88158 0.91954 0.91942 0.84958 0.84844 0.76463 0.92034 0.93515 0.91911 0.90982 0.90108 0.92242 0.94102 0.92860 0.92734 0.92947 0.92806 0.91463 0.93713 0.92622 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.75 9.81 -40.52 -0.40 -5.15 16 3 C 0.51 8.28 7.90 34.61 0.27 8.56 16 4 O -0.51 -9.33 16.13 -19.24 -0.31 -9.64 16 5 C -0.16 -2.71 5.87 -105.03 -0.62 -3.33 16 6 C -0.05 -0.69 9.61 -39.09 -0.38 -1.07 16 7 C -0.15 -2.47 10.02 -39.70 -0.40 -2.87 16 8 C -0.06 -1.23 7.53 -39.09 -0.29 -1.53 16 9 C -0.15 -2.97 5.61 -105.02 -0.59 -3.55 16 10 C 0.56 11.65 5.79 -12.32 -0.07 11.58 16 11 O -0.56 -12.54 14.31 5.33 0.08 -12.46 16 12 N -0.58 -11.68 1.99 -176.17 -0.35 -12.03 16 13 C 0.20 4.33 3.98 -5.19 -0.02 4.31 16 14 C -0.55 -12.72 7.31 -34.44 -0.25 -12.97 16 15 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.07 1.67 5.29 -17.82 -0.09 1.57 16 17 N -0.88 -21.34 13.29 55.43 0.74 -20.60 16 18 Si 0.90 18.65 29.54 -169.99 -5.02 13.63 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C 0.13 2.37 4.56 -4.04 -0.02 2.35 16 23 C -0.08 -1.33 0.85 -154.51 -0.13 -1.46 16 24 C -0.13 -2.16 7.13 37.16 0.26 -1.90 16 25 C -0.14 -1.79 8.47 37.16 0.31 -1.47 16 26 C -0.14 -2.25 7.54 37.16 0.28 -1.97 16 27 C 0.00 -0.04 9.13 -38.76 -0.35 -0.39 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.13 1.64 7.60 -52.48 -0.40 1.24 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.22 4.68 2.48 -52.48 -0.13 4.55 16 34 H 0.06 1.38 4.22 -51.94 -0.22 1.16 16 35 H 0.05 1.05 5.60 -51.93 -0.29 0.76 16 36 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.07 1.33 7.44 -51.93 -0.39 0.94 16 38 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 39 H 0.06 1.04 7.61 -51.93 -0.40 0.64 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.99 5.94 -51.93 -0.31 0.69 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.19 5.70 -51.93 -0.30 0.90 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.14 2.67 7.41 -52.48 -0.39 2.28 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -26.72 383.04 -7.51 -34.23 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.01 Total: 8.96 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.01 Total: -2.71 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.39 Total: -32.63 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.63 Total: -27.25 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -26.72 -7.51 -34.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.266 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds