Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00131 * 2 1 4 4 C 1.52995 * 109.46942 * 66.04697 * 3 2 1 5 5 C 1.50700 * 109.47326 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00296 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99900 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00050 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46973 * 60.00467 * 9 7 5 11 11 H 1.48503 * 109.47067 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47263 * 300.00625 * 9 7 5 13 13 C 1.46900 * 110.99942 * 236.05038 * 2 1 3 14 14 H 1.08998 * 109.53869 * 179.05137 * 13 2 1 15 15 C 1.53123 * 109.50431 * 58.95231 * 13 2 1 16 16 C 1.53115 * 109.15813 * 182.40844 * 15 13 2 17 17 C 1.53040 * 109.28385 * 57.65346 * 16 15 13 18 18 N 1.46850 * 109.52281 * 300.82186 * 17 16 15 19 19 C 1.46892 * 111.00003 * 185.83725 * 18 17 16 20 20 C 1.50706 * 109.47293 * 66.04694 * 19 18 17 21 21 N 1.29950 * 126.28313 * 269.97612 * 20 19 18 22 22 O 1.21297 * 110.24594 * 179.72521 * 21 20 19 23 23 C 1.33648 * 109.81313 * 0.46326 * 22 21 20 24 24 C 1.50701 * 126.55026 * 179.79850 * 23 22 21 25 25 C 1.53001 * 117.51956 * 350.97865 * 24 23 22 26 26 C 1.52999 * 60.00190 * 107.47765 * 25 24 23 27 27 N 1.31129 * 106.89746 * 359.54536 * 23 22 21 28 28 C 1.46850 * 111.19780 * 61.73605 * 18 17 16 29 29 H 1.09001 * 109.47248 * 183.95722 * 1 2 3 30 30 H 1.09005 * 109.47088 * 303.95103 * 1 2 3 31 31 H 1.09000 * 109.47651 * 63.94936 * 1 2 3 32 32 H 1.08994 * 109.47360 * 186.04865 * 3 2 1 33 33 H 1.09000 * 109.46698 * 306.05012 * 3 2 1 34 34 H 1.09003 * 109.47356 * 300.00446 * 4 3 2 35 35 H 1.09001 * 109.47441 * 60.00130 * 4 3 2 36 36 H 0.97003 * 120.00136 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.52260 * 62.49978 * 15 13 2 38 38 H 1.09000 * 109.56957 * 302.33969 * 15 13 2 39 39 H 1.08997 * 109.50441 * 297.71055 * 16 15 13 40 40 H 1.09002 * 109.53395 * 177.61268 * 16 15 13 41 41 H 1.08995 * 109.46211 * 180.80587 * 17 16 15 42 42 H 1.08996 * 109.45074 * 60.82820 * 17 16 15 43 43 H 1.09003 * 109.47419 * 306.04479 * 19 18 17 44 44 H 1.09007 * 109.47193 * 186.04258 * 19 18 17 45 45 H 1.09002 * 115.55088 * 205.27474 * 24 23 22 46 46 H 1.09001 * 117.49733 * 214.97195 * 25 24 23 47 47 H 1.08995 * 117.49577 * 359.97438 * 25 24 23 48 48 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 49 49 H 1.09004 * 117.51638 * 107.47550 * 26 25 24 50 50 H 1.09004 * 109.46161 * 58.27557 * 28 18 17 51 51 H 1.09000 * 109.45871 * 178.24657 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1721 3.4641 1.3186 6 1 2.7201 3.8322 0.4638 7 6 1.9662 4.2816 2.4096 8 7 1.2985 3.8335 3.4503 9 14 2.6370 6.0250 2.4103 10 1 2.0467 6.7829 1.2778 11 1 2.2836 6.6908 3.6898 12 1 4.1143 5.9871 2.2640 13 6 1.9954 -0.7659 -1.1376 14 1 3.0849 -0.7363 -1.1241 15 6 1.4836 -0.1556 -2.4455 16 6 1.9875 -0.9951 -3.6227 17 6 1.5149 -2.4406 -3.4516 18 7 2.0310 -2.9792 -2.1867 19 6 1.7133 -4.4072 -2.0541 20 6 2.4581 -5.1875 -3.1065 21 7 2.0317 -5.4678 -4.3016 22 8 2.8680 -6.1045 -4.9071 23 6 3.9357 -6.3052 -4.1287 24 6 5.1898 -7.0536 -4.5010 25 6 5.1856 -7.8279 -5.8205 26 6 5.9938 -6.5349 -5.6949 27 7 3.6859 -5.7220 -2.9812 28 6 1.5225 -2.2180 -1.0385 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8525 31 1 -0.3634 0.4513 -0.9232 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9273 -0.8309 34 1 0.5472 2.0844 1.4266 35 1 2.0658 1.5015 2.1492 36 1 1.1540 4.4085 4.2181 37 1 1.8542 0.8649 -2.5407 38 1 0.3937 -0.1487 -2.4432 39 1 3.0769 -0.9691 -3.6483 40 1 1.5919 -0.5907 -4.5544 41 1 1.8841 -3.0439 -4.2809 42 1 0.4253 -2.4672 -3.4399 43 1 0.6411 -4.5545 -2.1834 44 1 2.0112 -4.7554 -1.0650 45 1 5.7462 -7.4824 -3.6675 46 1 5.7392 -8.7662 -5.8552 47 1 4.2755 -7.7966 -6.4195 48 1 5.6155 -5.6527 -6.2114 49 1 7.0793 -6.6222 -5.6468 50 1 0.4328 -2.2458 -1.0382 51 1 1.8972 -2.6598 -0.1152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071870761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = 106.667318 kcal Electronic energy + Delta-G solvation = -28764.234939 eV Core-core repulsion = 24895.958404 eV Total energy + Delta-G solvation = -3868.276535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.87781 -39.70725 -38.01644 -37.11062 -35.82723 -33.53169 -32.80015 -32.07733 -30.50821 -28.56833 -27.78950 -26.07031 -25.37793 -24.42907 -23.72439 -23.05184 -22.96564 -21.79230 -20.68889 -20.07105 -19.00482 -18.43555 -17.76712 -16.80413 -16.60061 -16.03936 -15.52405 -15.32946 -14.87049 -14.66519 -14.52604 -14.35531 -13.91198 -13.68913 -13.51110 -13.38369 -13.00102 -12.63942 -12.58312 -12.28449 -12.26689 -12.17003 -12.02978 -11.91669 -11.46603 -11.27208 -11.22376 -11.20515 -11.19607 -11.15150 -10.84556 -10.78549 -10.57395 -10.50884 -10.35150 -9.99766 -9.76206 -9.34347 -9.10563 -8.54555 -8.30205 -7.63838 -5.97135 -3.99335 0.79187 1.87538 2.39537 3.02578 3.31371 3.34926 3.39232 3.41612 3.56420 3.85741 4.09204 4.23525 4.31105 4.43879 4.59065 4.75755 4.76621 4.89907 4.97871 5.01929 5.05158 5.09320 5.21801 5.29656 5.36201 5.38573 5.39519 5.45131 5.46872 5.51012 5.56606 5.62997 5.73378 5.79228 5.86602 5.94444 5.98334 6.03948 6.18177 6.34422 6.37700 6.51371 6.59636 6.78931 6.86733 7.00956 7.52614 7.60607 7.82352 7.89824 7.93266 8.11217 8.46348 9.07705 9.63970 11.14166 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.001903 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.440233 B =14710.808793 C =15068.582950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.065 3.935 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.090 3.910 14 H 0.088 0.912 15 C -0.157 4.157 16 C -0.109 4.109 17 C 0.054 3.946 18 N -0.531 5.531 19 C 0.146 3.854 20 C 0.189 3.811 21 N -0.383 5.383 22 O 0.075 5.925 23 C 0.205 3.795 24 C -0.079 4.079 25 C -0.159 4.159 26 C -0.152 4.152 27 N -0.461 5.461 28 C 0.068 3.932 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.150 0.850 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.103 0.897 49 H 0.115 0.885 50 H 0.039 0.961 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -24.765 -19.381 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.062 4.062 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.019 4.019 14 H 0.106 0.894 15 C -0.196 4.196 16 C -0.148 4.148 17 C -0.074 4.074 18 N -0.257 5.257 19 C 0.016 3.984 20 C -0.085 4.085 21 N -0.091 5.091 22 O 0.016 5.984 23 C -0.015 4.015 24 C -0.099 4.099 25 C -0.197 4.197 26 C -0.191 4.191 27 N -0.194 5.194 28 C -0.059 4.059 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.168 0.832 46 H 0.132 0.868 47 H 0.125 0.875 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.057 0.943 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.442 -24.491 -18.598 31.072 hybrid contribution -0.742 1.287 -0.725 1.653 sum 3.700 -23.204 -19.323 30.422 Atomic orbital electron populations 1.22475 0.88568 1.00822 1.01076 1.62261 1.07413 1.16220 1.39809 1.22326 0.98531 0.85017 1.00312 1.19101 0.96852 0.93998 0.91015 1.21155 1.35144 0.97836 1.01914 0.92903 1.24987 0.95316 0.98416 0.95583 1.69961 1.40781 1.36469 1.06019 0.86666 0.79475 0.84735 0.77147 1.20355 1.21290 1.20229 1.21667 1.00361 0.91577 0.88300 0.89414 1.22312 1.01132 1.00147 0.95992 1.21491 1.01677 0.93490 0.98125 1.22161 0.97259 0.96405 0.91536 1.61716 1.60532 1.00224 1.03248 1.20255 0.95901 0.87137 0.95071 1.25659 0.90167 0.99354 0.93276 1.74668 1.13224 1.12651 1.08571 1.85253 1.21078 1.52506 1.39569 1.27682 0.92008 0.96441 0.85369 1.20317 0.90953 1.03389 0.95263 1.23178 1.03374 0.96726 0.96416 1.23180 0.99494 0.98603 0.97790 1.71880 1.13287 1.12754 1.21458 1.22147 0.97461 0.93870 0.92461 0.92608 0.90311 0.96039 0.92166 0.96033 0.96491 0.95722 0.92980 0.91166 0.91888 0.91195 0.91710 0.91294 0.94675 0.91894 0.87228 0.83221 0.86836 0.87493 0.87861 0.86713 0.94272 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.62 60.06 0.52 0.83 16 2 N -0.53 -9.68 4.75 -234.79 -1.12 -10.80 16 3 C 0.06 1.38 4.34 -3.82 -0.02 1.36 16 4 C 0.03 0.73 4.90 -27.89 -0.14 0.59 16 5 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.09 1.37 2.39 -67.63 -0.16 1.21 16 14 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 15 C -0.16 -2.18 4.59 -26.61 -0.12 -2.31 16 16 C -0.11 -1.33 6.09 -26.65 -0.16 -1.50 16 17 C 0.05 0.66 5.31 -3.83 -0.02 0.64 16 18 N -0.53 -6.61 4.65 -236.11 -1.10 -7.71 16 19 C 0.15 1.62 5.59 -4.98 -0.03 1.59 16 20 C 0.19 2.30 6.85 -156.37 -1.07 1.23 16 21 N -0.38 -4.65 11.28 30.90 0.35 -4.30 16 22 O 0.07 0.78 11.08 18.09 0.20 0.98 16 23 C 0.21 1.96 7.97 -13.05 -0.10 1.85 16 24 C -0.08 -0.44 6.33 -91.77 -0.58 -1.02 16 25 C -0.16 -0.53 10.18 -26.73 -0.27 -0.80 16 26 C -0.15 -0.60 10.23 -26.73 -0.27 -0.87 16 27 N -0.46 -5.58 11.55 -9.87 -0.11 -5.69 16 28 C 0.07 0.89 4.56 -3.83 -0.02 0.87 16 29 H 0.06 0.80 6.31 -51.93 -0.33 0.48 16 30 H 0.08 1.49 6.30 -51.93 -0.33 1.16 16 31 H 0.02 0.34 6.24 -51.93 -0.32 0.02 16 32 H 0.06 1.29 8.00 -51.93 -0.42 0.87 16 33 H 0.02 0.46 7.00 -51.93 -0.36 0.09 16 34 H 0.02 0.46 6.47 -51.93 -0.34 0.13 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 1.06 6.89 -51.93 -0.36 0.70 16 38 H 0.06 0.88 6.27 -51.93 -0.33 0.56 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.87 6.45 -51.93 -0.34 0.53 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.11 1.12 7.98 -51.93 -0.41 0.70 16 45 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.11 0.38 8.01 -51.93 -0.42 -0.03 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.04 0.50 6.38 -51.93 -0.33 0.17 16 51 H 0.09 1.16 8.01 -51.93 -0.42 0.74 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -32.24 397.64 -11.38 -43.62 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.45 Total: -2.68 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.86 Total: -9.95 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -1.24 Total: -54.81 kcal Atomic # 8 Polarization: 0.78 SS G_CDS: 0.20 Total: 0.98 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.24 -11.38 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071870761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.291 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds