Wall clock time and date at job start Tue Mar 31 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99835 * 2 1 4 4 C 1.53004 * 109.47493 * 293.95688 * 3 2 1 5 5 C 1.50698 * 109.46832 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00264 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00560 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99655 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47184 * 90.00484 * 9 7 5 11 11 H 1.48503 * 109.47282 * 210.00037 * 9 7 5 12 12 H 1.48497 * 109.47401 * 329.99981 * 9 7 5 13 13 C 1.46900 * 111.00121 * 123.96134 * 2 1 3 14 14 H 1.08997 * 109.53193 * 186.14841 * 13 2 1 15 15 C 1.53123 * 109.48930 * 306.24529 * 13 2 1 16 16 C 1.53127 * 109.15019 * 177.60800 * 15 13 2 17 17 C 1.53042 * 109.27596 * 302.34079 * 16 15 13 18 18 N 1.46843 * 109.52278 * 59.17923 * 17 16 15 19 19 C 1.46895 * 110.99970 * 174.15687 * 18 17 16 20 20 C 1.50700 * 109.47354 * 294.20914 * 19 18 17 21 21 N 1.29946 * 126.28421 * 90.02105 * 20 19 18 22 22 O 1.21301 * 110.25402 * 179.97438 * 21 20 19 23 23 C 1.33646 * 109.80634 * 0.02562 * 22 21 20 24 24 C 1.50704 * 126.55130 * 179.97438 * 23 22 21 25 25 C 1.52997 * 117.49698 * 8.59165 * 24 23 22 26 26 C 1.52996 * 60.00061 * 252.51131 * 25 24 23 27 27 N 1.31127 * 106.89623 * 359.75997 * 23 22 21 28 28 C 1.46847 * 111.20124 * 298.25596 * 18 17 16 29 29 H 1.08997 * 109.47122 * 296.04172 * 1 2 3 30 30 H 1.09000 * 109.47357 * 56.04762 * 1 2 3 31 31 H 1.09001 * 109.47308 * 176.04243 * 1 2 3 32 32 H 1.09004 * 109.46831 * 53.95836 * 3 2 1 33 33 H 1.09005 * 109.47065 * 173.95255 * 3 2 1 34 34 H 1.08996 * 109.46427 * 299.99724 * 4 3 2 35 35 H 1.08999 * 109.46926 * 60.00307 * 4 3 2 36 36 H 0.96990 * 120.00575 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.53012 * 57.70373 * 15 13 2 38 38 H 1.08997 * 109.57453 * 297.53650 * 15 13 2 39 39 H 1.08997 * 109.49981 * 182.39822 * 16 15 13 40 40 H 1.08999 * 109.50124 * 62.28085 * 16 15 13 41 41 H 1.08993 * 109.46299 * 299.16259 * 17 16 15 42 42 H 1.09000 * 109.45057 * 179.19029 * 17 16 15 43 43 H 1.09000 * 109.47118 * 54.20800 * 19 18 17 44 44 H 1.09003 * 109.47534 * 174.20891 * 19 18 17 45 45 H 1.08999 * 115.55180 * 154.30014 * 24 23 22 46 46 H 1.09001 * 117.50299 * 359.97438 * 25 24 23 47 47 H 1.09005 * 117.50051 * 145.02055 * 25 24 23 48 48 H 1.09002 * 117.50061 * 252.50730 * 26 25 24 49 49 H 1.09005 * 117.51861 * 107.48410 * 26 25 24 50 50 H 1.09002 * 109.46481 * 181.76055 * 28 18 17 51 51 H 1.08994 * 109.46283 * 301.73908 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1720 3.4642 -1.3183 6 1 2.7200 3.8322 -0.4635 7 6 1.9661 4.2818 -2.4093 8 7 2.4374 5.5095 -2.4093 9 14 1.0176 3.6454 -3.8875 10 1 -0.4281 3.9354 -3.7102 11 1 1.5097 4.3162 -5.1176 12 1 1.2170 2.1790 -4.0098 13 6 1.9955 -0.7661 1.1375 14 1 3.0796 -0.6604 1.1775 15 6 1.3818 -0.2378 2.4371 16 6 1.8895 -1.0799 3.6110 17 6 1.5290 -2.5481 3.3727 18 7 2.1398 -3.0060 2.1183 19 6 1.9309 -4.4473 1.9264 20 6 2.6750 -5.2091 2.9927 21 7 2.2098 -5.5580 4.1548 22 8 3.0554 -6.1605 4.7819 23 6 4.1745 -6.2556 4.0575 24 6 5.4581 -6.9271 4.4729 25 6 5.4425 -7.7411 5.7682 26 6 6.1634 -6.3925 5.7209 27 7 3.9406 -5.6570 2.9146 28 6 1.6318 -2.2432 0.9708 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 1.5610 1.9273 0.8310 33 1 3.0797 1.3444 0.1083 34 1 2.0658 1.5016 -2.1491 35 1 0.5471 2.0846 -1.4264 36 1 2.2928 6.0845 -3.1769 37 1 0.2954 -0.3075 2.3817 38 1 1.6732 0.8024 2.5821 39 1 1.4231 -0.7358 4.5341 40 1 2.9719 -0.9791 3.6898 41 1 0.4459 -2.6502 3.3077 42 1 1.9018 -3.1522 4.1999 43 1 0.8666 -4.6724 1.9948 44 1 2.3020 -4.7407 0.9444 45 1 6.0841 -7.2899 3.6576 46 1 4.5040 -7.7906 6.3203 47 1 6.0582 -8.6399 5.8054 48 1 7.2534 -6.4038 5.7269 49 1 5.6992 -5.5547 6.2414 50 1 2.0790 -2.6261 0.0535 51 1 0.5481 -2.3466 0.9172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071870762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:59 Heat of formation + Delta-G solvation = 109.936459 kcal Electronic energy + Delta-G solvation = -28818.374445 eV Core-core repulsion = 24950.239670 eV Total energy + Delta-G solvation = -3868.134775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.90215 -39.76589 -38.03184 -37.20140 -35.88338 -33.57974 -32.77179 -32.10542 -30.79087 -28.89104 -27.80099 -26.34647 -25.40128 -24.46667 -23.66792 -23.07965 -22.99634 -21.72369 -20.68686 -19.98668 -19.12128 -18.46082 -17.79166 -16.90942 -16.82071 -16.21229 -15.56403 -15.37855 -14.97622 -14.76398 -14.52141 -14.22024 -13.90368 -13.83863 -13.53522 -13.40188 -13.03795 -12.78220 -12.62105 -12.49365 -12.30717 -12.27807 -12.18259 -12.01053 -11.50431 -11.47972 -11.31185 -11.29602 -11.27798 -11.21940 -10.87744 -10.83129 -10.63103 -10.46717 -10.02329 -9.89366 -9.84897 -9.64852 -9.18086 -8.59807 -8.50392 -7.77542 -6.02152 -4.00030 0.76889 1.85003 2.37301 3.00619 3.29097 3.33239 3.40980 3.47246 3.52726 3.81785 4.07784 4.22291 4.28321 4.45240 4.48307 4.71356 4.73443 4.84957 4.91052 5.00460 5.01303 5.06173 5.18787 5.25534 5.32296 5.33411 5.36258 5.43641 5.44430 5.45292 5.50478 5.56618 5.70061 5.70628 5.79425 5.84152 5.91639 5.99049 6.09803 6.20905 6.26993 6.39356 6.45243 6.74156 6.79919 6.81457 7.18538 7.33343 7.62246 7.65718 7.87320 7.87373 8.55551 9.02152 9.60464 11.11238 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.001964 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.768682 B =14256.055999 C =14446.391083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.538 5.538 3 C 0.072 3.928 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.091 3.909 14 H 0.089 0.911 15 C -0.157 4.157 16 C -0.110 4.110 17 C 0.054 3.946 18 N -0.531 5.531 19 C 0.146 3.854 20 C 0.189 3.811 21 N -0.383 5.383 22 O 0.075 5.925 23 C 0.206 3.794 24 C -0.080 4.080 25 C -0.159 4.159 26 C -0.152 4.152 27 N -0.461 5.461 28 C 0.070 3.930 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.150 0.850 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.103 0.897 50 H 0.087 0.913 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -28.650 17.211 33.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.261 5.261 3 C -0.054 4.054 4 C -0.045 4.045 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.187 1.187 13 C -0.019 4.019 14 H 0.107 0.893 15 C -0.196 4.196 16 C -0.148 4.148 17 C -0.074 4.074 18 N -0.257 5.257 19 C 0.017 3.983 20 C -0.085 4.085 21 N -0.091 5.091 22 O 0.016 5.984 23 C -0.014 4.014 24 C -0.099 4.099 25 C -0.197 4.197 26 C -0.190 4.190 27 N -0.194 5.194 28 C -0.058 4.058 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.168 0.832 46 H 0.125 0.875 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.479 -28.281 16.500 32.836 hybrid contribution -1.555 0.094 -0.059 1.559 sum 0.925 -28.187 16.441 32.644 Atomic orbital electron populations 1.22480 0.88624 1.00908 1.01062 1.62221 1.07376 1.16159 1.40337 1.22127 0.99106 0.84848 0.99335 1.19582 0.96124 0.95709 0.93109 1.21086 1.35500 0.95529 1.03756 0.91164 1.24996 0.95379 0.94661 0.98365 1.69909 1.46382 1.07139 1.30897 0.86773 0.80232 0.79865 0.82431 1.20457 1.21444 1.18700 1.21653 1.00350 0.91706 0.88178 0.89256 1.22320 1.00960 1.00327 0.95974 1.21495 1.01966 0.93309 0.98039 1.22164 0.96656 0.96820 0.91732 1.61715 1.59471 1.01072 1.03462 1.20249 0.96518 0.86958 0.94602 1.25640 0.89313 0.99522 0.94010 1.74665 1.13412 1.13067 1.07977 1.85255 1.18209 1.54290 1.40629 1.27684 0.91298 0.96193 0.86252 1.20319 0.90271 1.04661 0.94697 1.23180 1.03727 0.95953 0.96838 1.23180 1.00744 0.98086 0.97036 1.71873 1.13634 1.13620 1.20295 1.22101 0.97708 0.93564 0.92410 0.95578 0.90779 0.92494 0.95431 0.91489 0.95711 0.97091 0.92766 0.91758 0.91137 0.91624 0.91122 0.94670 0.91250 0.91911 0.87241 0.83217 0.87491 0.86826 0.86697 0.87848 0.89445 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.58 60.06 0.52 0.79 16 2 N -0.54 -9.17 4.71 -234.79 -1.11 -10.27 16 3 C 0.07 1.48 4.47 -3.82 -0.02 1.46 16 4 C -0.01 -0.18 3.97 -27.88 -0.11 -0.29 16 5 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 6 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 9 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.09 1.30 2.35 -67.63 -0.16 1.15 16 14 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 15 C -0.16 -2.08 4.55 -26.60 -0.12 -2.20 16 16 C -0.11 -1.29 6.09 -26.64 -0.16 -1.45 16 17 C 0.05 0.63 5.31 -3.83 -0.02 0.61 16 18 N -0.53 -6.37 4.65 -236.12 -1.10 -7.47 16 19 C 0.15 1.57 5.59 -4.98 -0.03 1.54 16 20 C 0.19 2.24 6.84 -156.38 -1.07 1.17 16 21 N -0.38 -4.55 11.27 30.90 0.35 -4.20 16 22 O 0.07 0.77 11.08 18.09 0.20 0.97 16 23 C 0.21 1.92 7.97 -13.06 -0.10 1.82 16 24 C -0.08 -0.43 6.33 -91.77 -0.58 -1.01 16 25 C -0.16 -0.51 10.18 -26.73 -0.27 -0.78 16 26 C -0.15 -0.58 10.23 -26.73 -0.27 -0.85 16 27 N -0.46 -5.47 11.55 -9.87 -0.11 -5.59 16 28 C 0.07 0.87 4.69 -3.84 -0.02 0.85 16 29 H 0.03 0.39 6.16 -51.93 -0.32 0.07 16 30 H 0.07 1.25 6.30 -51.93 -0.33 0.92 16 31 H 0.06 0.76 6.45 -51.93 -0.34 0.42 16 32 H 0.03 0.57 7.13 -51.93 -0.37 0.20 16 33 H 0.07 1.39 7.93 -51.93 -0.41 0.97 16 34 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 35 H 0.01 0.26 5.90 -51.93 -0.31 -0.04 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.06 0.85 6.20 -51.93 -0.32 0.53 16 38 H 0.07 1.02 7.04 -51.93 -0.37 0.66 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 43 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 44 H 0.11 1.07 7.99 -51.93 -0.41 0.66 16 45 H 0.15 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.11 0.37 8.00 -51.93 -0.42 -0.05 16 47 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 48 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 49 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 1.10 8.02 -51.93 -0.42 0.68 16 51 H 0.04 0.46 6.51 -51.93 -0.34 0.12 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -32.83 394.37 -11.00 -43.84 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.43 Total: -2.57 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.85 Total: -10.66 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -1.20 Total: -54.92 kcal Atomic # 8 Polarization: 0.77 SS G_CDS: 0.20 Total: 0.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.83 -11.00 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071870762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.774 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds