Wall clock time and date at job start Tue Mar 31 2020 05:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99887 * 2 1 4 4 H 1.48510 * 109.47056 * 239.99757 * 3 2 1 5 5 H 1.48499 * 109.47318 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47284 * 120.00026 * 3 2 1 7 7 C 1.37878 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46899 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99584 * 97.37892 * 10 9 7 12 12 O 1.21532 * 119.99934 * 185.88799 * 11 10 9 13 13 C 1.48118 * 120.00410 * 5.61308 * 11 10 9 14 14 C 1.39886 * 120.91263 * 331.22133 * 13 11 10 15 15 C 1.38076 * 119.03149 * 179.70599 * 14 13 11 16 16 N 1.31860 * 120.91875 * 0.58869 * 15 14 13 17 17 C 1.31895 * 122.03039 * 359.70863 * 16 15 14 18 18 Cl 1.73598 * 119.56697 * 180.02562 * 17 16 15 19 19 C 1.38338 * 120.86011 * 359.97438 * 17 16 15 20 20 C 1.39938 * 120.00033 * 277.38428 * 10 9 7 21 21 C 1.38868 * 120.04881 * 353.21089 * 20 10 9 22 22 C 1.38103 * 119.95522 * 179.76919 * 21 20 10 23 23 C 1.38480 * 120.04308 * 0.48525 * 22 21 20 24 24 F 1.35108 * 119.95016 * 179.74185 * 23 22 21 25 25 C 1.38473 * 120.09506 * 359.77305 * 23 22 21 26 26 C 1.38108 * 120.05031 * 359.97438 * 25 23 22 27 27 H 0.97000 * 119.99792 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47133 * 60.00546 * 9 7 2 29 29 H 1.08995 * 109.47365 * 300.00030 * 9 7 2 30 30 H 1.08005 * 120.48669 * 359.97438 * 14 13 11 31 31 H 1.08001 * 119.54109 * 180.29647 * 15 14 13 32 32 H 1.08003 * 120.50373 * 180.02562 * 19 17 16 33 33 H 1.08006 * 120.02133 * 0.02562 * 21 20 10 34 34 H 1.08007 * 119.98101 * 180.21076 * 22 21 20 35 35 H 1.08004 * 119.97748 * 179.97438 * 25 23 22 36 36 H 1.07997 * 120.02524 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5269 -4.2223 1.1581 12 8 3.3946 -5.0730 1.1748 13 6 1.8296 -3.8511 2.4111 14 6 1.3123 -2.5639 2.5914 15 6 0.6640 -2.2617 3.7724 16 7 0.5397 -3.1629 4.7269 17 6 1.0175 -4.3858 4.6009 18 17 0.8170 -5.5217 5.8982 19 6 1.6754 -4.7753 3.4480 20 6 2.7760 -4.0434 -1.2013 21 6 2.3403 -3.5134 -2.4086 22 6 2.9105 -3.9362 -3.5932 23 6 3.9092 -4.8955 -3.5784 24 9 4.4621 -5.3116 -4.7388 25 6 4.3415 -5.4292 -2.3760 26 6 3.7776 -5.0053 -1.1886 27 1 -0.4850 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 1.4146 -1.8187 1.8163 31 1 0.2573 -1.2719 3.9184 32 1 2.0641 -5.7782 3.3508 33 1 1.5588 -2.7679 -2.4209 34 1 2.5743 -3.5218 -4.5323 35 1 5.1202 -6.1775 -2.3666 36 1 4.1147 -5.4221 -0.2511 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071893408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:27 Heat of formation + Delta-G solvation = 17.559732 kcal Electronic energy + Delta-G solvation = -25691.629910 eV Core-core repulsion = 21696.946205 eV Total energy + Delta-G solvation = -3994.683705 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.53426 -40.99468 -39.56950 -37.80105 -36.57186 -35.78318 -33.14314 -32.64068 -30.96458 -30.76246 -29.07932 -27.82579 -24.76682 -23.79388 -23.49550 -22.40081 -21.78544 -19.98361 -17.62327 -17.33918 -17.25005 -16.87520 -16.21155 -16.10945 -15.60553 -15.29197 -15.11605 -14.88442 -14.58095 -14.21524 -14.10929 -13.78157 -13.52189 -13.20987 -12.84824 -12.72596 -12.44613 -12.21828 -12.07517 -11.63001 -11.35603 -11.29232 -11.16195 -10.91279 -10.58573 -10.53228 -10.38281 -9.79662 -9.63151 -9.41454 -9.04241 -8.96316 -8.74890 -8.61705 -7.42335 -6.57573 -4.70696 0.79241 1.11392 1.53753 1.62159 1.85812 2.96813 3.05429 3.12027 3.13970 3.23013 3.84098 4.00776 4.12557 4.49504 4.65501 4.69454 4.73005 5.02709 5.11572 5.14635 5.18644 5.52576 5.64105 5.71062 5.75081 5.83118 5.94196 6.20595 6.34267 6.40522 6.50224 6.58722 6.65497 6.76379 6.79769 6.95949 7.36180 7.45326 7.52537 7.71929 7.82709 8.28487 8.44259 8.99233 10.46028 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.004771 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.549283 B = 5867.027858 C = 8549.820370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.197 3.803 10 N -0.521 5.521 11 C 0.563 3.437 12 O -0.528 6.528 13 C -0.081 4.081 14 C -0.138 4.138 15 C 0.107 3.893 16 N -0.467 5.467 17 C 0.153 3.847 18 Cl -0.041 7.041 19 C -0.102 4.102 20 C 0.161 3.839 21 C -0.111 4.111 22 C -0.134 4.134 23 C 0.056 3.944 24 F -0.151 7.151 25 C -0.137 4.137 26 C -0.151 4.151 27 H 0.274 0.726 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.220 0.780 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -5.893 1.828 6.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.079 3.921 10 N -0.239 5.239 11 C 0.354 3.646 12 O -0.409 6.409 13 C -0.092 4.092 14 C -0.157 4.157 15 C -0.050 4.050 16 N -0.178 5.178 17 C -0.011 4.011 18 Cl -0.012 7.012 19 C -0.123 4.123 20 C 0.065 3.935 21 C -0.132 4.132 22 C -0.154 4.154 23 C 0.036 3.964 24 F -0.130 7.130 25 C -0.157 4.157 26 C -0.170 4.170 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.236 0.764 31 H 0.189 0.811 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.943 -6.059 2.741 6.717 hybrid contribution 0.777 0.700 -0.964 1.423 sum 1.720 -5.359 1.776 5.902 Atomic orbital electron populations 1.69904 1.05975 1.28552 1.46666 1.24978 0.94973 0.99608 0.93673 0.86477 0.79706 0.81714 0.79454 1.19670 1.20709 1.19583 1.21309 0.94210 0.89580 1.54079 0.91190 1.20640 0.88091 0.82179 1.01166 1.45786 1.41766 1.32426 1.03921 1.18196 0.82420 0.80744 0.83277 1.90339 1.31646 1.33937 1.84971 1.20108 0.99777 0.94987 0.94362 1.24646 0.92108 0.98467 1.00477 1.22791 0.96197 0.97974 0.87995 1.66813 1.17451 1.00950 1.32607 1.21287 0.99640 0.90617 0.89586 1.98379 1.96305 1.57052 1.49492 1.21776 0.97921 1.01372 0.91269 1.18001 0.94350 0.95428 0.85685 1.20939 1.01490 1.01021 0.89721 1.20862 0.97252 0.98098 0.99149 1.17745 0.97745 0.99536 0.81409 1.91435 1.84699 1.89473 1.47397 1.21063 1.01811 1.01831 0.90948 1.22697 0.95737 0.97533 1.01077 0.91577 0.93268 0.91043 0.76445 0.81139 0.83292 0.83469 0.84962 0.85227 0.79524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.15 13.29 55.43 0.74 -19.41 16 2 C 0.07 1.65 5.29 -17.82 -0.09 1.56 16 3 Si 0.90 18.00 29.54 -169.99 -5.02 12.98 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.55 -12.14 7.43 -34.44 -0.26 -12.40 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.20 3.98 4.09 -5.19 -0.02 3.96 16 10 N -0.52 -9.99 2.70 -115.68 -0.31 -10.30 16 11 C 0.56 10.58 7.46 -12.21 -0.09 10.49 16 12 O -0.53 -10.21 13.17 5.34 0.07 -10.14 16 13 C -0.08 -1.41 5.61 -104.66 -0.59 -2.00 16 14 C -0.14 -2.41 7.60 -39.02 -0.30 -2.70 16 15 C 0.11 1.71 11.17 -17.60 -0.20 1.51 16 16 N -0.47 -7.63 10.31 -10.41 -0.11 -7.74 16 17 C 0.15 2.38 7.27 -17.49 -0.13 2.25 16 18 Cl -0.04 -0.54 29.10 -51.86 -1.51 -2.05 16 19 C -0.10 -1.60 9.46 -38.98 -0.37 -1.96 16 20 C 0.16 2.99 6.45 -83.69 -0.54 2.45 16 21 C -0.11 -1.93 9.24 -39.40 -0.36 -2.30 16 22 C -0.13 -2.10 10.02 -39.54 -0.40 -2.50 16 23 C 0.06 0.88 7.30 -39.41 -0.29 0.60 16 24 F -0.15 -2.35 17.27 2.25 0.04 -2.31 16 25 C -0.14 -2.15 10.02 -39.54 -0.40 -2.55 16 26 C -0.15 -2.64 9.05 -39.39 -0.36 -3.00 16 27 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 28 H 0.05 1.04 6.36 -51.93 -0.33 0.71 16 29 H 0.07 1.45 4.14 -51.93 -0.21 1.23 16 30 H 0.22 4.22 3.02 -52.48 -0.16 4.06 16 31 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.15 2.11 7.98 -52.48 -0.42 1.69 16 33 H 0.15 2.61 6.17 -52.48 -0.32 2.28 16 34 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 35 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.19 3.39 4.51 -56.30 -0.25 3.14 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -23.35 326.63 -8.07 -31.42 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -2.51 Total: 9.22 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -4.38 Total: -6.59 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.32 Total: -37.45 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.98 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -23.35 -8.07 -31.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071893408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.979 kcal (2) G-P(sol) polarization free energy of solvation -23.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds