Wall clock time and date at job start Tue Mar 31 2020 05:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39598 * 120.10870 * 346.81321 * 3 2 1 5 5 C 1.37992 * 120.00919 * 179.97438 * 4 3 2 6 6 C 1.38244 * 120.22158 * 0.02562 * 5 4 3 7 7 C 1.38982 * 120.20717 * 359.97438 * 6 5 4 8 8 N 1.39698 * 119.99941 * 180.27756 * 7 6 5 9 9 C 1.46500 * 119.99701 * 179.72880 * 8 7 6 10 10 C 1.50707 * 109.47086 * 90.00313 * 9 8 7 11 11 O 1.21285 * 119.99900 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99615 * 179.97438 * 10 9 8 13 13 C 1.37105 * 119.99629 * 179.97438 * 12 10 9 14 14 H 1.07990 * 120.00199 * 0.02562 * 13 12 10 15 15 C 1.38951 * 119.99682 * 179.97438 * 13 12 10 16 16 N 1.31409 * 120.00158 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99612 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46864 * 60.00860 * 17 15 13 19 19 H 1.48500 * 109.46929 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47234 * 300.00163 * 17 15 13 21 21 C 1.46496 * 120.00315 * 359.72709 * 8 7 6 22 22 C 1.50699 * 109.46957 * 89.99938 * 21 8 7 23 23 C 1.38239 * 119.99938 * 269.72655 * 22 21 8 24 24 C 1.38237 * 119.99524 * 179.76483 * 23 22 21 25 25 C 1.38234 * 120.00328 * 0.50861 * 24 23 22 26 26 C 1.38231 * 119.99970 * 359.75018 * 25 24 23 27 27 C 1.38234 * 120.00053 * 89.99998 * 22 21 8 28 28 C 1.38685 * 119.99461 * 0.02562 * 7 6 5 29 29 H 4.52049 * 14.03210 * 0.02562 * 4 2 1 30 30 H 1.08001 * 119.99328 * 359.95360 * 4 3 2 31 31 H 1.08002 * 119.89336 * 180.02562 * 5 4 3 32 32 H 1.07994 * 119.89161 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47356 * 209.99903 * 9 8 7 34 34 H 1.09000 * 109.47500 * 330.00370 * 9 8 7 35 35 H 0.96998 * 120.00577 * 359.97438 * 12 10 9 36 36 H 0.97005 * 119.99796 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47525 * 210.00319 * 21 8 7 38 38 H 1.09002 * 109.46861 * 330.00624 * 21 8 7 39 39 H 1.07998 * 120.00396 * 0.02562 * 23 22 21 40 40 H 1.08005 * 119.99791 * 180.23633 * 24 23 22 41 41 H 1.08002 * 120.00141 * 179.71959 * 25 24 23 42 42 H 1.08002 * 120.00369 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.00026 * 0.02562 * 27 22 21 44 44 H 1.07998 * 120.10747 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3068 -1.1748 0.2755 5 6 4.6868 -1.1720 0.2744 6 6 5.3800 -0.0075 0.0016 7 6 4.6915 1.1680 -0.2738 8 7 5.3964 2.3409 -0.5546 9 6 4.6706 3.5785 -0.8508 10 6 4.4218 4.3337 0.4294 11 8 4.8119 3.8823 1.4854 12 7 3.7658 5.5106 0.4009 13 6 3.5390 6.1974 1.5656 14 1 3.8863 5.7955 2.5058 15 6 2.8631 7.4111 1.5361 16 7 2.4409 7.9004 0.3920 17 14 2.5547 8.3472 3.1231 18 1 3.8532 8.6752 3.7645 19 1 1.8196 9.6020 2.8227 20 1 1.7458 7.5083 4.0434 21 6 6.8613 2.3334 -0.5528 22 6 7.3636 2.0001 -1.9340 23 6 7.5931 0.6833 -2.2869 24 6 8.0492 0.3773 -3.5554 25 6 8.2859 1.3886 -4.4676 26 6 8.0615 2.7057 -4.1130 27 6 7.6003 3.0114 -2.8461 28 6 3.3047 1.1751 -0.2751 29 1 -1.0499 -0.0011 -0.0002 30 1 2.7689 -2.0865 0.4898 31 1 5.2271 -2.0826 0.4874 32 1 6.4599 -0.0114 0.0018 33 1 5.2636 4.1947 -1.5267 34 1 3.7174 3.3371 -1.3213 35 1 3.4541 5.8719 -0.4437 36 1 1.9687 8.7476 0.3715 37 1 7.2294 3.3167 -0.2598 38 1 7.2199 1.5856 0.1545 39 1 7.4120 -0.1065 -1.5730 40 1 8.2249 -0.6518 -3.8324 41 1 8.6466 1.1498 -5.4572 42 1 8.2468 3.4959 -4.8254 43 1 7.4256 4.0405 -2.5689 44 1 2.7678 2.0876 -0.4885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071897046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:24 Heat of formation + Delta-G solvation = 83.906481 kcal Electronic energy + Delta-G solvation = -27471.356564 eV Core-core repulsion = 23741.276118 eV Total energy + Delta-G solvation = -3730.080445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01153 -38.90685 -38.08527 -36.00023 -33.92303 -33.38009 -32.11016 -31.27875 -30.98609 -30.00979 -29.59661 -27.73070 -25.39464 -24.21247 -23.12595 -22.52941 -21.61164 -20.94348 -19.32726 -18.51283 -17.89460 -17.05129 -16.66466 -16.13031 -15.72194 -15.53085 -15.08699 -15.03905 -14.54729 -14.47228 -14.05093 -13.79144 -13.74785 -13.46420 -13.38527 -13.17028 -12.89802 -12.55481 -12.45916 -11.87682 -11.63347 -11.57338 -11.44364 -11.36055 -11.13337 -11.02353 -11.00727 -10.69561 -10.46511 -10.31588 -10.24382 -9.72534 -9.52967 -8.95809 -8.83862 -8.47563 -8.36827 -8.00382 -7.01221 -6.44201 -3.85633 1.21030 1.25825 1.36708 1.81927 2.88240 3.17805 3.22907 3.24245 3.27812 3.31655 3.83501 3.86909 4.16402 4.28442 4.42741 4.75717 4.77945 4.94324 5.00564 5.03810 5.08987 5.16327 5.21723 5.30996 5.42687 5.46570 5.55142 5.63636 5.68218 5.76083 5.80360 5.87220 5.93396 5.96674 6.02942 6.20806 6.28226 6.40808 6.44715 6.46447 6.57357 6.64949 6.77203 6.95266 7.01941 7.43779 7.52165 7.67506 7.72971 8.02119 8.57183 9.14591 9.49481 10.00600 10.72569 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.008394 B = 0.003954 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.054649 B = 7079.230115 C = 9491.333671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C 0.050 3.950 4 C -0.163 4.163 5 C -0.075 4.075 6 C -0.192 4.192 7 C 0.241 3.759 8 N -0.591 5.591 9 C 0.110 3.890 10 C 0.417 3.583 11 O -0.581 6.581 12 N -0.561 5.561 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.025 3.975 16 N -0.900 5.900 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.166 3.834 22 C -0.101 4.101 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.105 4.105 28 C -0.164 4.164 29 H 0.222 0.778 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -14.628 -9.379 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C 0.049 3.951 4 C -0.183 4.183 5 C -0.094 4.094 6 C -0.215 4.215 7 C 0.138 3.862 8 N -0.298 5.298 9 C -0.017 4.017 10 C 0.202 3.798 11 O -0.465 6.465 12 N -0.198 5.198 13 C -0.430 4.430 14 H 0.119 0.881 15 C -0.177 4.177 16 N -0.541 5.541 17 Si 0.756 3.244 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.043 3.957 22 C -0.102 4.102 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.186 4.186 29 H 0.239 0.761 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.202 -14.558 -8.728 18.439 hybrid contribution -0.660 0.949 0.229 1.179 sum 6.542 -13.609 -8.499 17.327 Atomic orbital electron populations 1.24804 0.95716 1.00143 0.99999 1.20173 0.92182 1.00555 1.00831 1.15637 0.86089 0.93640 0.99725 1.20793 0.94017 0.96906 1.06555 1.20682 0.93593 0.97242 0.97837 1.20751 0.99560 0.92074 1.09092 1.17551 0.90553 0.86165 0.91947 1.45947 1.03539 1.05958 1.74309 1.21256 0.98097 0.85876 0.96509 1.20506 0.84810 0.83672 0.90845 1.90537 1.55362 1.68889 1.31677 1.41888 1.49555 1.18074 1.10232 1.19639 1.33984 1.01497 0.87836 0.88058 1.25248 0.96815 0.97207 0.98459 1.69598 1.38706 1.20801 1.25040 0.85939 0.78669 0.78479 0.81287 1.19897 1.20916 1.19881 1.20261 0.79881 1.03463 0.92077 1.20485 0.98808 0.93589 0.97328 1.21180 0.98569 0.95966 0.96648 1.21124 1.00008 0.99106 0.93873 1.21129 1.00520 0.93099 0.99354 1.21138 0.99860 0.96532 0.96478 1.21124 0.98648 0.99177 0.93430 1.20692 0.92221 0.98024 1.07660 0.76100 0.86492 0.86042 0.85943 0.89295 0.89255 0.77480 0.91771 0.89547 0.89785 0.85884 0.86298 0.86428 0.86198 0.86004 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 19.25 29.55 0.57 -1.96 16 2 C -0.14 -2.18 13.24 -38.84 -0.51 -2.69 16 3 C 0.05 0.82 5.72 -107.03 -0.61 0.20 16 4 C -0.16 -2.29 9.75 -39.16 -0.38 -2.67 16 5 C -0.07 -0.96 10.02 -39.67 -0.40 -1.36 16 6 C -0.19 -2.70 8.48 -39.30 -0.33 -3.04 16 7 C 0.24 3.97 6.55 -83.83 -0.55 3.42 16 8 N -0.59 -9.58 2.08 -174.53 -0.36 -9.95 16 9 C 0.11 1.90 5.63 -5.19 -0.03 1.87 16 10 C 0.42 9.59 7.85 -10.98 -0.09 9.50 16 11 O -0.58 -15.53 16.01 5.55 0.09 -15.44 16 12 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 13 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 17 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 C 0.17 2.32 5.36 -5.20 -0.03 2.29 16 22 C -0.10 -1.23 5.46 -104.62 -0.57 -1.80 16 23 C -0.11 -1.18 9.33 -39.58 -0.37 -1.55 16 24 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 26 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 27 C -0.11 -1.23 9.70 -39.58 -0.38 -1.62 16 28 C -0.16 -2.87 8.90 -38.99 -0.35 -3.22 16 29 H 0.22 1.98 7.80 -54.10 -0.42 1.56 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.47 4.33 -52.49 -0.23 1.24 16 33 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.09 1.46 6.20 -51.93 -0.32 1.13 16 35 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.09 1.26 8.02 -51.93 -0.42 0.84 16 38 H 0.08 1.10 6.14 -51.93 -0.32 0.78 16 39 H 0.12 1.24 5.83 -52.49 -0.31 0.94 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.12 2.29 6.14 -52.49 -0.32 1.97 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -32.62 382.10 -9.46 -42.08 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.12 Total: 14.43 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -5.47 Total: -15.42 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.30 Total: -47.41 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.09 Total: -15.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.62 -9.46 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071897046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.987 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds