Wall clock time and date at job start Tue Mar 31 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47244 * 45.65932 * 3 2 1 5 5 N 1.46497 * 109.47034 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00612 * 89.99471 * 5 4 3 7 7 C 1.50701 * 109.47260 * 270.00459 * 6 5 4 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99694 * 180.27562 * 7 6 5 10 10 N 1.31523 * 119.99908 * 179.72112 * 9 7 6 11 11 Si 1.86800 * 120.00405 * 359.71709 * 9 7 6 12 12 H 1.48500 * 109.47210 * 90.00069 * 11 9 7 13 13 H 1.48504 * 109.47424 * 210.00300 * 11 9 7 14 14 H 1.48502 * 109.46888 * 330.00390 * 11 9 7 15 15 C 1.34779 * 119.99637 * 269.99986 * 5 4 3 16 16 O 1.21287 * 120.00127 * 180.02562 * 15 5 4 17 17 C 1.50703 * 120.00320 * 359.97438 * 15 5 4 18 18 H 1.09001 * 115.54654 * 34.28217 * 17 15 5 19 19 C 1.53001 * 117.50013 * 248.61314 * 17 15 5 20 20 C 1.52990 * 117.49972 * 179.97438 * 17 15 5 21 21 H 1.09001 * 117.50305 * 0.02562 * 20 17 15 22 22 C 1.50705 * 117.49963 * 214.98132 * 20 17 15 23 23 C 1.38237 * 119.98355 * 300.00149 * 22 20 17 24 24 C 1.38182 * 120.04902 * 179.97438 * 23 22 20 25 25 C 1.38495 * 120.02580 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.01589 * 179.97438 * 25 24 23 27 27 C 1.38400 * 119.97424 * 0.02562 * 25 24 23 28 28 C 1.38439 * 119.95036 * 359.76499 * 27 25 24 29 29 F 1.35093 * 120.01456 * 180.23168 * 28 27 25 30 30 H 1.08997 * 109.47256 * 285.65355 * 3 2 1 31 31 H 1.09002 * 109.47106 * 165.65209 * 3 2 1 32 32 H 1.08999 * 109.46965 * 59.99681 * 4 3 2 33 33 H 1.08995 * 109.46771 * 299.99412 * 4 3 2 34 34 H 1.09000 * 109.47197 * 149.99465 * 6 5 4 35 35 H 1.09007 * 109.46342 * 30.00037 * 6 5 4 36 36 H 0.96995 * 120.00181 * 179.97438 * 10 9 7 37 37 H 1.08998 * 117.49839 * 0.02562 * 19 17 15 38 38 H 1.09001 * 117.49722 * 145.01354 * 19 17 15 39 39 H 1.08000 * 119.97219 * 359.97415 * 23 22 20 40 40 H 1.07999 * 119.99138 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.02461 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0073 -1.0317 5 7 4.5835 -1.0071 -1.0312 6 6 5.3160 -1.9144 -0.1444 7 6 5.5666 -1.2325 1.1760 8 1 5.2157 -0.2241 1.3381 9 6 6.2492 -1.8939 2.1747 10 7 6.4727 -1.2969 3.3251 11 14 6.8566 -3.6380 1.8941 12 1 8.2275 -3.5991 1.3245 13 1 6.8781 -4.3688 3.1867 14 1 5.9470 -4.3326 0.9478 15 6 5.2574 -0.1720 -1.8467 16 8 6.4703 -0.1721 -1.8467 17 6 4.5040 0.7610 -2.7594 18 1 3.5649 1.1483 -2.3644 19 6 4.5804 0.4922 -4.2637 20 6 5.3262 1.6845 -3.6604 21 1 6.4120 1.6171 -3.5934 22 6 4.7756 3.0604 -3.9341 23 6 3.5462 3.2027 -4.5500 24 6 3.0398 4.4636 -4.8011 25 6 3.7634 5.5864 -4.4354 26 9 3.2684 6.8192 -4.6814 27 6 4.9943 5.4452 -3.8187 28 6 5.4987 4.1815 -3.5637 29 9 6.6979 4.0421 -2.9576 30 1 2.9715 -0.2765 0.9895 31 1 2.9709 0.9964 -0.2547 32 1 2.7550 -0.7301 -2.0212 33 1 2.7557 -2.0031 -0.7771 34 1 6.2685 -2.1801 -0.6028 35 1 4.7269 -2.8169 0.0188 36 1 6.9526 -1.7623 4.0279 37 1 5.1752 -0.3597 -4.5932 38 1 3.6915 0.7031 -4.8584 39 1 2.9811 2.3276 -4.8351 40 1 2.0794 4.5736 -5.2827 41 1 5.5591 6.3203 -3.5327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071903828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:25 Heat of formation + Delta-G solvation = -43.292471 kcal Electronic energy + Delta-G solvation = -27861.793723 eV Core-core repulsion = 23571.967988 eV Total energy + Delta-G solvation = -4289.825736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.123 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.27903 -49.09497 -40.21856 -39.03528 -36.95245 -36.33694 -35.25474 -32.75442 -31.16732 -30.94646 -30.54080 -28.28270 -24.84606 -24.36189 -23.76382 -23.08344 -21.78487 -20.81821 -18.69067 -18.51136 -17.69072 -17.41448 -17.02356 -16.68373 -16.22624 -16.11819 -15.76779 -15.64268 -15.45483 -14.79614 -14.63204 -14.57007 -14.44336 -14.21228 -13.64286 -13.46349 -13.11505 -12.72496 -12.68141 -12.52493 -12.44704 -12.41101 -12.14994 -11.80080 -11.72933 -11.65396 -11.56558 -11.16312 -10.84756 -10.75411 -10.61969 -10.52907 -10.21851 -9.60720 -9.38200 -9.22294 -8.71973 -8.65323 -7.96906 -6.15651 -4.15693 0.60171 0.69977 2.71061 2.89253 2.91741 3.09970 3.24669 3.30110 3.32930 3.48393 3.59628 3.88120 4.10031 4.14059 4.26826 4.33561 4.36410 4.53099 4.67001 4.72899 4.85386 4.94363 5.02850 5.15316 5.22072 5.25280 5.38679 5.49849 5.51919 5.55895 5.65314 5.73503 5.75323 5.83557 5.89874 6.15087 6.20465 6.45607 6.57075 6.83348 7.15099 7.51641 7.67062 8.02545 8.36622 8.76906 8.86705 9.44180 10.96993 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.003260 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.488977 B = 8585.844975 C = 9527.184834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.220 3.780 3 C -0.056 4.056 4 C 0.125 3.875 5 N -0.589 5.589 6 C 0.214 3.786 7 C -0.534 4.534 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.894 5.894 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.539 3.461 16 O -0.527 6.527 17 C -0.171 4.171 18 H 0.125 0.875 19 C -0.143 4.143 20 C -0.091 4.091 21 H 0.133 0.867 22 C -0.091 4.091 23 C -0.064 4.064 24 C -0.161 4.161 25 C 0.123 3.877 26 F -0.133 7.133 27 C -0.190 4.190 28 C 0.143 3.857 29 F -0.121 7.121 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 8.338 -17.913 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.098 4.098 3 C -0.097 4.097 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.094 3.906 7 C -0.572 4.572 8 H 0.097 0.903 9 C -0.128 4.128 10 N -0.531 5.531 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.325 3.675 16 O -0.404 6.404 17 C -0.192 4.192 18 H 0.142 0.858 19 C -0.180 4.180 20 C -0.110 4.110 21 H 0.151 0.849 22 C -0.092 4.092 23 C -0.082 4.082 24 C -0.180 4.180 25 C 0.103 3.897 26 F -0.112 7.112 27 C -0.210 4.210 28 C 0.124 3.876 29 F -0.099 7.099 30 H 0.152 0.848 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.886 8.321 -17.687 21.077 hybrid contribution 0.894 -0.478 0.393 1.087 sum -6.993 7.843 -17.294 20.236 Atomic orbital electron populations 1.81186 1.13088 1.09250 1.09502 1.29264 0.95205 0.92724 0.92618 1.20024 0.80802 1.03031 1.05860 1.21284 0.81451 0.99667 0.97720 1.47800 1.05096 1.39202 1.39821 1.19772 0.92580 0.88709 0.89556 1.21314 1.37387 1.02703 0.95783 0.90308 1.24845 0.95118 0.97874 0.94973 1.69885 1.40953 1.37588 1.04721 0.86895 0.80183 0.85040 0.77825 1.19938 1.21130 1.19019 1.19321 0.87367 0.80367 0.80409 1.90704 1.13639 1.67833 1.68185 1.22546 1.01773 1.01770 0.93103 0.85763 1.23132 1.02605 0.99417 0.92834 1.20917 1.00139 0.86633 1.03284 0.84870 1.19289 0.95425 0.93297 1.01195 1.20817 0.93966 0.97339 0.96107 1.21164 1.01620 0.91229 1.03961 1.17298 0.92786 0.80138 0.99444 1.91530 1.87253 1.40283 1.92130 1.21046 0.97130 0.97861 1.04960 1.17101 0.82446 0.92598 0.95492 1.91585 1.41771 1.96464 1.80095 0.84776 0.87642 0.90424 0.89484 0.94318 0.94901 0.92474 0.87358 0.87544 0.83678 0.83967 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.91 18.54 42.16 0.78 -6.13 16 2 C 0.22 2.86 15.43 -20.76 -0.32 2.54 16 3 C -0.06 -0.69 5.91 -29.52 -0.17 -0.86 16 4 C 0.12 1.54 5.04 -4.04 -0.02 1.52 16 5 N -0.59 -10.05 2.46 -175.05 -0.43 -10.48 16 6 C 0.21 4.59 4.27 -5.19 -0.02 4.57 16 7 C -0.53 -13.70 9.47 -34.44 -0.33 -14.03 16 8 H 0.08 2.17 7.67 -52.49 -0.40 1.77 16 9 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 11 Si 0.87 20.28 27.46 -169.99 -4.67 15.62 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.27 -5.73 6.55 56.52 0.37 -5.36 16 15 C 0.54 9.35 7.46 -10.98 -0.08 9.27 16 16 O -0.53 -11.63 15.84 5.55 0.09 -11.54 16 17 C -0.17 -2.05 4.43 -91.77 -0.41 -2.46 16 18 H 0.12 1.23 6.48 -51.93 -0.34 0.89 16 19 C -0.14 -1.31 9.56 -26.72 -0.26 -1.56 16 20 C -0.09 -1.06 5.31 -91.76 -0.49 -1.55 16 21 H 0.13 1.87 7.40 -51.93 -0.38 1.49 16 22 C -0.09 -0.94 5.62 -104.54 -0.59 -1.52 16 23 C -0.06 -0.50 9.29 -39.60 -0.37 -0.87 16 24 C -0.16 -1.24 10.02 -39.51 -0.40 -1.63 16 25 C 0.12 1.13 7.30 -39.43 -0.29 0.85 16 26 F -0.13 -1.30 17.27 2.25 0.04 -1.26 16 27 C -0.19 -1.87 10.01 -39.45 -0.39 -2.26 16 28 C 0.14 1.63 7.24 -39.43 -0.29 1.34 16 29 F -0.12 -1.64 16.61 2.25 0.04 -1.61 16 30 H 0.13 1.99 7.26 -51.93 -0.38 1.61 16 31 H 0.11 1.19 7.45 -51.93 -0.39 0.80 16 32 H 0.08 0.72 6.64 -51.93 -0.34 0.38 16 33 H 0.09 1.02 7.89 -51.93 -0.41 0.61 16 34 H 0.04 0.91 6.84 -51.93 -0.36 0.55 16 35 H 0.03 0.67 6.96 -51.93 -0.36 0.31 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.11 0.64 6.18 -51.93 -0.32 0.32 16 39 H 0.15 0.77 6.02 -52.49 -0.32 0.45 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -32.77 364.09 -6.83 -39.60 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.43 Total: 0.29 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -4.51 Total: -4.73 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 1.13 Total: -41.86 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.77 -6.83 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071903828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.688 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds