Wall clock time and date at job start Tue Mar 31 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99872 * 2 1 4 4 C 1.50698 * 109.47187 * 293.94985 * 3 2 1 5 5 H 1.08002 * 119.99974 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00563 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99554 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00372 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47178 * 90.00048 * 8 6 4 10 10 H 1.48503 * 109.47350 * 210.00125 * 8 6 4 11 11 H 1.48502 * 109.47395 * 330.00124 * 8 6 4 12 12 C 1.46902 * 110.99775 * 123.94967 * 2 1 3 13 13 C 1.53006 * 109.46878 * 164.01143 * 12 2 1 14 14 H 1.08991 * 109.46768 * 58.51024 * 13 12 2 15 15 O 1.42899 * 109.47041 * 298.50847 * 13 12 2 16 16 C 1.53001 * 109.47006 * 178.51161 * 13 12 2 17 17 O 1.42894 * 109.47022 * 185.00212 * 16 13 12 18 18 C 1.35906 * 116.99858 * 180.02562 * 17 16 13 19 19 C 1.38749 * 120.05747 * 359.97438 * 18 17 16 20 20 C 1.38117 * 119.94479 * 180.02562 * 19 18 17 21 21 C 1.38286 * 120.05976 * 0.02562 * 20 19 18 22 22 C 1.38254 * 120.10593 * 0.02562 * 21 20 19 23 23 C 1.38166 * 120.05721 * 359.67365 * 22 21 20 24 24 C 1.50697 * 120.02878 * 180.29786 * 23 22 21 25 25 F 1.39899 * 109.46989 * 0.32375 * 24 23 22 26 26 F 1.39900 * 109.46898 * 120.32316 * 24 23 22 27 27 F 1.39896 * 109.47141 * 240.32207 * 24 23 22 28 28 H 1.08997 * 109.47125 * 301.53016 * 1 2 3 29 29 H 1.09000 * 109.46901 * 61.53289 * 1 2 3 30 30 H 1.09006 * 109.47036 * 181.52832 * 1 2 3 31 31 H 1.08994 * 109.47285 * 53.95343 * 3 2 1 32 32 H 1.09001 * 109.47312 * 173.95329 * 3 2 1 33 33 H 0.96993 * 120.00177 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47027 * 44.01359 * 12 2 1 35 35 H 1.08996 * 109.47057 * 284.01163 * 12 2 1 36 36 H 0.96696 * 114.00274 * 299.99989 * 15 13 12 37 37 H 1.09000 * 109.46882 * 305.00275 * 16 13 12 38 38 H 1.09005 * 109.47078 * 64.99785 * 16 13 12 39 39 H 1.07999 * 120.02588 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.97065 * 180.02562 * 20 19 18 41 41 H 1.07999 * 119.94898 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.96401 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5286 7 7 2.7110 4.0022 -0.6146 8 14 1.5818 4.1871 -3.1378 9 1 0.2693 4.8671 -2.9955 10 1 2.6238 5.1886 -3.4792 11 1 1.4986 3.1716 -4.2181 12 6 1.9954 -0.7659 1.1377 13 6 3.4728 -1.0839 0.8985 14 1 4.0281 -0.1549 0.7698 15 8 3.6034 -1.8839 -0.2784 16 6 4.0307 -1.8494 2.1000 17 8 5.4360 -2.0446 1.9297 18 6 6.0900 -2.7135 2.9155 19 6 5.3934 -3.1722 4.0244 20 6 6.0605 -3.8512 5.0252 21 6 7.4215 -4.0737 4.9230 22 6 8.1180 -3.6168 3.8196 23 6 7.4542 -2.9424 2.8128 24 6 8.2129 -2.4505 1.6072 25 9 9.5620 -2.7995 1.7309 26 9 7.6836 -3.0363 0.4523 27 9 8.0973 -1.0591 1.5193 28 1 -0.3633 0.5374 0.8759 29 1 -0.3633 0.4898 -0.9034 30 1 -0.3633 -1.0274 0.0274 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3444 0.1083 33 1 2.9856 4.9183 -0.7766 34 1 1.4356 -1.6956 1.2400 35 1 1.8933 -0.1780 2.0498 36 1 3.1334 -2.7278 -0.2345 37 1 3.8510 -1.2776 3.0104 38 1 3.5359 -2.8177 2.1755 39 1 4.3307 -2.9976 4.1053 40 1 5.5186 -4.2088 5.8883 41 1 7.9414 -4.6045 5.7068 42 1 9.1810 -3.7915 3.7424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071909527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:36 Heat of formation + Delta-G solvation = -203.746596 kcal Electronic energy + Delta-G solvation = -29114.898688 eV Core-core repulsion = 24452.771826 eV Total energy + Delta-G solvation = -4662.126862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.04224 -47.61367 -47.43263 -40.58950 -38.41027 -37.22012 -35.40163 -32.51064 -32.40985 -30.92101 -29.97228 -27.39673 -26.58611 -26.03659 -23.95323 -22.80604 -22.30457 -21.49848 -20.17882 -18.95806 -18.36035 -18.35461 -17.72744 -16.69030 -16.58741 -16.22158 -15.61233 -15.38269 -14.98169 -14.87484 -14.59178 -14.45167 -14.30336 -14.28761 -13.92778 -13.68017 -13.63688 -13.63170 -13.41536 -13.21443 -12.86273 -12.78077 -12.46428 -11.98411 -11.95747 -11.53671 -11.40897 -11.22624 -11.22232 -10.93996 -10.72292 -10.66946 -10.37131 -9.79953 -9.73556 -9.62571 -9.16840 -8.66778 -8.41193 -7.28143 -6.00645 -4.01311 0.62004 0.97306 2.65257 2.81134 3.16677 3.34212 3.40773 3.45893 3.73837 3.99231 4.38162 4.45138 4.49068 4.53528 4.58811 4.67782 4.71764 4.91672 4.96246 5.06597 5.14152 5.32289 5.34923 5.36852 5.42133 5.53585 5.74726 5.81334 5.88543 5.99421 6.02216 6.24872 6.27092 6.33448 6.67291 6.99669 7.24013 7.27193 7.78840 8.02482 8.06856 8.17077 8.52853 9.05332 9.62621 11.10571 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015143 B = 0.002915 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.604168 B = 9604.095877 C =10667.053321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.030 3.970 13 C 0.116 3.884 14 H 0.116 0.884 15 O -0.529 6.529 16 C 0.027 3.973 17 O -0.290 6.290 18 C 0.186 3.814 19 C -0.215 4.215 20 C -0.047 4.047 21 C -0.167 4.167 22 C -0.035 4.035 23 C -0.222 4.222 24 C 0.516 3.484 25 F -0.184 7.184 26 F -0.170 7.170 27 F -0.170 7.170 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.043 0.957 31 H -0.010 1.010 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.362 0.638 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 -18.785 13.935 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.254 5.254 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.099 4.099 13 C 0.056 3.944 14 H 0.134 0.866 15 O -0.332 6.332 16 C -0.049 4.049 17 O -0.201 6.201 18 C 0.138 3.862 19 C -0.234 4.234 20 C -0.066 4.066 21 C -0.185 4.185 22 C -0.054 4.054 23 C -0.224 4.224 24 C 0.462 3.538 25 F -0.165 7.165 26 F -0.151 7.151 27 F -0.151 7.151 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.208 0.792 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.222 -18.203 13.094 23.884 hybrid contribution -0.863 0.603 0.255 1.083 sum 7.359 -17.600 13.349 23.283 Atomic orbital electron populations 1.22201 0.88477 0.98975 1.01140 1.62010 1.06723 1.18046 1.38653 1.19815 0.95597 0.81245 0.96754 1.21122 1.34781 0.96803 1.01662 0.91845 1.24987 0.95274 0.97385 0.97010 1.69949 1.38396 1.11440 1.34118 0.86490 0.77886 0.79222 0.83793 1.20825 1.21231 1.19705 1.22554 0.94462 0.98695 0.94220 1.21981 0.95243 0.94668 0.82534 0.86616 1.86772 1.75284 1.33208 1.37901 1.23868 0.78294 1.01024 1.01686 1.86285 1.23226 1.69439 1.41164 1.18707 0.90333 0.89306 0.87835 1.21308 1.01186 1.05577 0.95326 1.21183 0.94417 0.93738 0.97215 1.21035 0.94503 1.04005 0.98964 1.20890 1.00455 0.92681 0.91331 1.19381 0.92394 1.12110 0.98548 1.17979 0.76599 0.75885 0.83317 1.93132 1.35359 1.92019 1.96034 1.93246 1.86055 1.83904 1.51930 1.93254 1.95675 1.29664 1.96544 0.97024 0.90587 0.93790 0.99252 0.94947 0.92927 0.91728 0.94723 0.79245 0.90739 0.91392 0.84297 0.84889 0.84805 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.32 60.07 0.56 1.32 16 2 N -0.53 -11.18 4.60 -244.37 -1.12 -12.30 16 3 C 0.19 4.96 4.57 -4.98 -0.02 4.94 16 4 C -0.51 -14.39 8.54 -34.44 -0.29 -14.68 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.49 4.63 -3.82 -0.02 0.47 16 13 C 0.12 1.88 3.27 -26.73 -0.09 1.79 16 14 H 0.12 2.31 6.55 -51.93 -0.34 1.97 16 15 O -0.53 -9.16 13.20 -40.09 -0.53 -9.69 16 16 C 0.03 0.33 4.37 37.16 0.16 0.49 16 17 O -0.29 -4.22 9.01 -24.30 -0.22 -4.44 16 18 C 0.19 2.31 6.57 -39.22 -0.26 2.05 16 19 C -0.22 -2.02 9.04 -39.44 -0.36 -2.38 16 20 C -0.05 -0.35 10.04 -39.61 -0.40 -0.75 16 21 C -0.17 -1.22 10.04 -39.56 -0.40 -1.62 16 22 C -0.04 -0.32 9.43 -39.60 -0.37 -0.70 16 23 C -0.22 -2.70 5.38 -104.47 -0.56 -3.26 16 24 C 0.52 7.17 2.99 36.00 0.11 7.28 16 25 F -0.18 -2.26 15.97 2.25 0.04 -2.23 16 26 F -0.17 -2.63 16.95 2.25 0.04 -2.59 16 27 F -0.17 -2.72 16.95 2.25 0.04 -2.68 16 28 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.08 1.54 6.90 -51.93 -0.36 1.18 16 30 H 0.04 0.68 7.97 -51.93 -0.41 0.26 16 31 H -0.01 -0.28 8.11 -51.93 -0.42 -0.70 16 32 H 0.03 0.91 6.38 -51.93 -0.33 0.57 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 35 H 0.03 0.55 8.05 -51.93 -0.42 0.14 16 36 H 0.36 4.58 9.05 45.56 0.41 4.99 16 37 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 38 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 39 H 0.14 1.05 6.30 -52.49 -0.33 0.72 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.14 1.03 7.16 -52.49 -0.38 0.66 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -33.78 363.80 -7.15 -40.94 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.56 Total: 0.38 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.03 Total: -3.57 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.39 Total: -38.63 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.75 Total: -14.13 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.11 Total: -7.50 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.78 -7.15 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071909527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.811 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds