Wall clock time and date at job start Tue Mar 31 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99823 * 2 1 4 4 C 1.50705 * 109.46801 * 66.05050 * 3 2 1 5 5 H 1.08000 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99700 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00014 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99637 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46790 * 90.00184 * 8 6 4 10 10 H 1.48497 * 109.46948 * 209.99634 * 8 6 4 11 11 H 1.48496 * 109.47396 * 330.00182 * 8 6 4 12 12 C 1.46904 * 110.99898 * 236.05098 * 2 1 3 13 13 C 1.53000 * 109.46815 * 199.84806 * 12 2 1 14 14 H 1.09001 * 109.47194 * 300.45411 * 13 12 2 15 15 O 1.42899 * 109.47216 * 60.46185 * 13 12 2 16 16 C 1.53002 * 109.46726 * 180.45976 * 13 12 2 17 17 O 1.42900 * 109.46918 * 175.00484 * 16 13 12 18 18 C 1.35899 * 116.99884 * 180.02562 * 17 16 13 19 19 C 1.38755 * 120.05732 * 359.71903 * 18 17 16 20 20 C 1.38125 * 119.94685 * 179.70420 * 19 18 17 21 21 C 1.38291 * 120.04906 * 0.59267 * 20 19 18 22 22 C 1.38237 * 120.11556 * 359.68226 * 21 20 19 23 23 C 1.38165 * 120.05383 * 0.02562 * 22 21 20 24 24 C 1.50707 * 120.02734 * 179.97438 * 23 22 21 25 25 F 1.39907 * 109.46954 * 0.02562 * 24 23 22 26 26 F 1.39902 * 109.47017 * 120.01755 * 24 23 22 27 27 F 1.39900 * 109.46905 * 240.02026 * 24 23 22 28 28 H 1.08999 * 109.47104 * 188.77408 * 1 2 3 29 29 H 1.09004 * 109.47084 * 308.77040 * 1 2 3 30 30 H 1.09003 * 109.47573 * 68.76964 * 1 2 3 31 31 H 1.09002 * 109.46729 * 186.04432 * 3 2 1 32 32 H 1.08997 * 109.47420 * 306.04937 * 3 2 1 33 33 H 0.96996 * 119.99686 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46764 * 79.84935 * 12 2 1 35 35 H 1.09001 * 109.46788 * 319.85129 * 12 2 1 36 36 H 0.96698 * 114.00245 * 59.99305 * 15 13 12 37 37 H 1.09001 * 109.46911 * 294.99874 * 16 13 12 38 38 H 1.08996 * 109.47332 * 54.99963 * 16 13 12 39 39 H 1.08005 * 120.02748 * 359.97438 * 19 18 17 40 40 H 1.07998 * 119.97255 * 180.30000 * 20 19 18 41 41 H 1.08000 * 119.93967 * 179.69879 * 21 20 19 42 42 H 1.08001 * 119.97146 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2986 5 1 1.0740 1.5114 2.0486 6 6 2.0276 3.3491 1.5290 7 7 2.7136 4.0013 0.6159 8 14 1.5827 4.1868 3.1383 9 1 2.6588 3.9497 4.1338 10 1 1.4313 5.6465 2.9112 11 1 0.3043 3.6301 3.6492 12 6 1.9954 -0.7659 -1.1377 13 6 3.4449 -1.1665 -0.8557 14 1 4.0464 -0.2704 -0.7029 15 8 3.4946 -1.9797 0.3183 16 6 3.9968 -1.9544 -2.0455 17 8 5.3832 -2.2281 -1.8336 18 6 6.0299 -2.9252 -2.8046 19 6 5.3427 -3.3424 -3.9355 20 6 6.0037 -4.0454 -4.9238 21 6 7.3464 -4.3442 -4.7811 22 6 8.0319 -3.9347 -3.6527 23 6 7.3767 -3.2259 -2.6641 24 6 8.1245 -2.7803 -1.4339 25 9 9.4570 -3.1979 -1.5213 26 9 8.0785 -1.3852 -1.3400 27 9 7.5325 -3.3440 -0.2986 28 1 -0.3633 -1.0156 0.1568 29 1 -0.3633 0.6435 0.8013 30 1 -0.3634 0.3721 -0.9579 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9275 -0.8308 33 1 2.9887 4.9171 0.7783 34 1 1.9565 -0.1524 -2.0378 35 1 1.3922 -1.6622 -1.2825 36 1 2.9803 -2.7960 0.2534 37 1 3.4520 -2.8933 -2.1437 38 1 3.8773 -1.3680 -2.9565 39 1 4.2928 -3.1137 -4.0450 40 1 5.4703 -4.3661 -5.8064 41 1 7.8602 -4.8982 -5.5527 42 1 9.0804 -4.1696 -3.5434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071909528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:38 Heat of formation + Delta-G solvation = -204.138731 kcal Electronic energy + Delta-G solvation = -29085.522363 eV Core-core repulsion = 24423.378497 eV Total energy + Delta-G solvation = -4662.143867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.04758 -47.61912 -47.43971 -40.59283 -38.40495 -37.21488 -35.40888 -32.51564 -32.41333 -30.92626 -29.97841 -27.39158 -26.58410 -26.04133 -23.97155 -22.78987 -22.30922 -21.47980 -20.20085 -18.96411 -18.36649 -18.36105 -17.73051 -16.68225 -16.58910 -16.22922 -15.61244 -15.38692 -14.98495 -14.89131 -14.59248 -14.45010 -14.30762 -14.28926 -13.93480 -13.66188 -13.64201 -13.63879 -13.41791 -13.21928 -12.85971 -12.78482 -12.46987 -11.99150 -11.96565 -11.56047 -11.41483 -11.22817 -11.22177 -10.91975 -10.73222 -10.62863 -10.38638 -9.80995 -9.75228 -9.62910 -9.17778 -8.67175 -8.41573 -7.28011 -6.01270 -4.01970 0.61622 0.96967 2.64670 2.80659 3.16314 3.35033 3.40855 3.43873 3.73202 3.98665 4.37843 4.44710 4.48431 4.53135 4.58644 4.67450 4.71460 4.91328 4.96052 5.06253 5.14208 5.32197 5.34381 5.37029 5.42075 5.52919 5.74344 5.81019 5.88414 5.99112 6.06389 6.24400 6.25161 6.32822 6.68664 6.99332 7.23740 7.27400 7.78605 8.02224 8.06642 8.17068 8.52435 9.04823 9.61990 11.09910 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.002876 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.649004 B = 9733.466447 C =10759.168154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.030 3.970 13 C 0.117 3.883 14 H 0.115 0.885 15 O -0.529 6.529 16 C 0.027 3.973 17 O -0.290 6.290 18 C 0.186 3.814 19 C -0.215 4.215 20 C -0.047 4.047 21 C -0.167 4.167 22 C -0.036 4.036 23 C -0.222 4.222 24 C 0.516 3.484 25 F -0.184 7.184 26 F -0.170 7.170 27 F -0.170 7.170 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.009 0.991 31 H 0.031 0.969 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.362 0.638 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 -19.187 -13.692 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.254 5.254 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.099 4.099 13 C 0.057 3.943 14 H 0.133 0.867 15 O -0.332 6.332 16 C -0.049 4.049 17 O -0.201 6.201 18 C 0.138 3.862 19 C -0.234 4.234 20 C -0.065 4.065 21 C -0.185 4.185 22 C -0.054 4.054 23 C -0.224 4.224 24 C 0.462 3.538 25 F -0.165 7.165 26 F -0.151 7.151 27 F -0.151 7.151 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.207 0.793 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.048 -18.629 -12.838 24.013 hybrid contribution -0.849 0.612 -0.266 1.080 sum 7.199 -18.017 -13.103 23.413 Atomic orbital electron populations 1.22234 0.88494 1.00090 1.00226 1.61985 1.06727 1.17958 1.38724 1.19806 0.95535 0.81309 0.96737 1.21131 1.34822 0.96818 1.01656 0.91806 1.24987 0.95287 0.97373 0.96992 1.69950 1.38350 1.11526 1.34062 0.86486 0.78879 0.78309 0.83668 1.20540 1.21372 1.19886 1.22549 0.94661 0.98573 0.94167 1.21958 0.95767 0.93827 0.82754 0.86742 1.86767 1.73444 1.35749 1.37211 1.23872 0.78897 1.00547 1.01572 1.86283 1.24888 1.67949 1.41009 1.18705 0.90332 0.89127 0.88019 1.21315 1.01375 1.05642 0.95066 1.21188 0.94376 0.93539 0.97444 1.21033 0.94823 1.04029 0.98619 1.20885 1.00268 0.92726 0.91480 1.19380 0.93062 1.11743 0.98255 1.17985 0.76536 0.75578 0.83682 1.93135 1.36858 1.90181 1.96368 1.93254 1.96122 1.29232 1.96542 1.93246 1.83558 1.84813 1.53521 0.93655 0.90246 0.97288 0.95052 0.99243 0.92922 0.94538 0.91798 0.79253 0.91395 0.90731 0.84295 0.84883 0.84806 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.37 60.06 0.56 1.28 16 2 N -0.53 -11.17 4.56 -244.36 -1.11 -12.28 16 3 C 0.19 4.96 4.55 -4.97 -0.02 4.94 16 4 C -0.51 -14.37 8.39 -34.44 -0.29 -14.66 16 5 H 0.06 1.80 7.16 -52.49 -0.38 1.43 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.03 0.49 4.66 -3.82 -0.02 0.47 16 13 C 0.12 1.89 3.31 -26.73 -0.09 1.80 16 14 H 0.11 2.26 6.78 -51.93 -0.35 1.91 16 15 O -0.53 -9.12 13.18 -40.09 -0.53 -9.64 16 16 C 0.03 0.33 4.37 37.16 0.16 0.49 16 17 O -0.29 -4.20 9.01 -24.28 -0.22 -4.42 16 18 C 0.19 2.30 6.57 -39.22 -0.26 2.04 16 19 C -0.22 -2.01 9.04 -39.43 -0.36 -2.37 16 20 C -0.05 -0.35 10.04 -39.60 -0.40 -0.75 16 21 C -0.17 -1.22 10.04 -39.56 -0.40 -1.61 16 22 C -0.04 -0.32 9.43 -39.61 -0.37 -0.70 16 23 C -0.22 -2.69 5.38 -104.47 -0.56 -3.25 16 24 C 0.52 7.12 2.99 36.01 0.11 7.23 16 25 F -0.18 -2.25 15.98 2.25 0.04 -2.21 16 26 F -0.17 -2.71 16.95 2.25 0.04 -2.67 16 27 F -0.17 -2.61 16.95 2.25 0.04 -2.58 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.64 6.66 -51.93 -0.35 1.29 16 30 H 0.01 0.16 8.13 -51.93 -0.42 -0.27 16 31 H 0.03 0.88 6.63 -51.93 -0.34 0.53 16 32 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 35 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.36 4.56 9.05 45.56 0.41 4.97 16 37 H 0.07 0.64 7.65 -51.93 -0.40 0.24 16 38 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 39 H 0.14 1.05 6.30 -52.48 -0.33 0.72 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.14 1.03 7.16 -52.49 -0.38 0.65 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -33.65 364.18 -7.15 -40.81 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.58 Total: 0.37 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.03 Total: -3.61 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.38 Total: -38.55 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.75 Total: -14.06 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.11 Total: -7.46 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.65 -7.15 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071909528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.330 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds