Wall clock time and date at job start Tue Mar 31 2020 05:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46996 * 2 1 4 4 O 1.21274 * 120.00171 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99893 * 180.02562 * 3 2 1 6 6 C 1.47529 * 125.63700 * 4.96419 * 5 3 2 7 7 C 1.54912 * 104.78051 * 155.91775 * 6 5 3 8 8 C 1.55152 * 101.61665 * 37.00461 * 7 6 5 9 9 C 1.47021 * 125.64759 * 185.01189 * 5 3 2 10 10 H 1.09004 * 109.88135 * 300.43869 * 9 5 3 11 11 C 1.52998 * 110.01159 * 61.52812 * 9 5 3 12 12 H 1.09000 * 110.36976 * 306.66149 * 11 9 5 13 13 C 1.54378 * 110.41041 * 184.30828 * 11 9 5 14 14 C 1.54269 * 105.06268 * 217.36935 * 13 11 9 15 15 C 1.54379 * 105.05510 * 0.02562 * 14 13 11 16 16 N 1.48560 * 110.40930 * 69.01197 * 11 9 5 17 17 C 1.46906 * 111.00084 * 277.81313 * 16 11 9 18 18 C 1.52994 * 109.47009 * 175.73117 * 17 16 11 19 19 H 1.08998 * 109.47492 * 55.00608 * 18 17 16 20 20 C 1.47203 * 109.47135 * 295.00407 * 18 17 16 21 21 N 5.82454 * 148.14854 * 88.79082 * 2 1 3 22 22 C 1.53006 * 109.46856 * 175.00477 * 18 17 16 23 23 C 1.50704 * 109.47059 * 185.00031 * 22 18 17 24 24 H 1.08003 * 119.99513 * 0.02562 * 23 22 18 25 25 C 1.37868 * 119.99805 * 179.97438 * 23 22 18 26 26 N 1.31518 * 119.99882 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 120.00258 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47090 * 89.99651 * 27 25 23 29 29 H 1.48500 * 109.46984 * 209.99592 * 27 25 23 30 30 H 1.48497 * 109.46900 * 329.99812 * 27 25 23 31 31 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46884 * 299.99810 * 1 2 3 33 33 H 1.09003 * 109.47289 * 60.00047 * 1 2 3 34 34 H 1.09004 * 109.47179 * 240.00262 * 2 1 3 35 35 H 1.09002 * 109.47524 * 120.00698 * 2 1 3 36 36 H 1.09003 * 110.40637 * 37.09011 * 6 5 3 37 37 H 1.08992 * 110.37385 * 274.73325 * 6 5 3 38 38 H 1.08997 * 111.00139 * 278.91251 * 7 6 5 39 39 H 1.08996 * 111.00016 * 155.09953 * 7 6 5 40 40 H 1.09003 * 110.71920 * 82.84386 * 8 7 6 41 41 H 1.09001 * 110.72373 * 205.93560 * 8 7 6 42 42 H 1.09002 * 110.32582 * 336.26633 * 13 11 9 43 43 H 1.09007 * 110.32441 * 98.47490 * 13 11 9 44 44 H 1.08992 * 110.32043 * 118.89796 * 14 13 11 45 45 H 1.08999 * 110.32494 * 241.00339 * 14 13 11 46 46 H 1.09003 * 110.40976 * 142.63174 * 15 14 13 47 47 H 1.09008 * 110.40999 * 264.95396 * 15 14 13 48 48 H 1.08996 * 109.47116 * 295.73899 * 17 16 11 49 49 H 1.09000 * 109.46503 * 55.73325 * 17 16 11 50 50 H 1.09000 * 109.46989 * 304.99779 * 22 18 17 51 51 H 1.08999 * 109.46821 * 65.00010 * 22 18 17 52 52 H 0.96998 * 120.00173 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4207 0.6498 -0.1049 7 6 5.6433 1.4129 -0.6730 8 6 5.5101 2.7873 0.0344 9 6 3.9824 2.9938 0.1038 10 1 3.6555 3.6236 -0.7236 11 6 3.6054 3.6469 1.4350 12 1 2.5227 3.6557 1.5601 13 6 4.1676 5.0828 1.5085 14 6 4.6031 5.2682 2.9768 15 6 4.2679 3.9284 3.6667 16 7 4.2517 2.9308 2.5648 17 6 3.4813 1.7382 2.9419 18 6 4.2305 0.9711 4.0332 19 1 4.4363 1.6381 4.8703 20 6 5.4994 0.4594 3.4901 21 7 6.4774 0.0649 3.0730 22 6 3.3720 -0.2007 4.5138 23 6 4.0551 -0.8822 5.6714 24 1 5.0062 -0.5159 6.0288 25 6 3.4654 -1.9726 6.2749 26 7 4.0617 -2.5677 7.2848 27 14 1.8200 -2.6057 5.6571 28 1 2.0467 -3.6252 4.6015 29 1 1.0705 -3.2176 6.7836 30 1 1.0350 -1.4774 5.0951 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 4.1199 -0.1459 -0.7865 37 1 4.6523 0.2407 0.8785 38 1 5.5678 1.5214 -1.7549 39 1 6.5749 0.9195 -0.3960 40 1 5.9399 2.7490 1.0354 41 1 5.9818 3.5725 -0.5564 42 1 5.0246 5.1884 0.8432 43 1 3.3944 5.8059 1.2488 44 1 5.6737 5.4647 3.0321 45 1 4.0449 6.0834 3.4372 46 1 5.0350 3.6754 4.3986 47 1 3.2898 3.9814 4.1450 48 1 2.5034 2.0408 3.3165 49 1 3.3537 1.0973 2.0695 50 1 2.3980 0.1697 4.8336 51 1 3.2405 -0.9128 3.6992 52 1 3.6470 -3.3350 7.7091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072268761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:05 Heat of formation + Delta-G solvation = -9.498275 kcal Electronic energy + Delta-G solvation = -31434.945708 eV Core-core repulsion = 27627.057766 eV Total energy + Delta-G solvation = -3807.887943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81794 -38.83322 -37.17626 -36.43156 -34.04232 -32.99855 -32.58685 -31.46797 -30.75069 -30.63812 -27.01611 -26.77104 -25.07576 -23.49558 -22.63596 -21.77632 -21.51321 -20.83105 -20.03417 -18.73208 -17.20287 -16.94101 -16.89049 -16.36970 -15.88441 -15.58539 -15.28672 -14.51492 -14.35532 -14.29093 -13.96121 -13.60823 -13.41907 -13.33795 -13.05596 -12.94164 -12.78439 -12.49139 -12.39433 -12.34127 -12.06079 -11.93079 -11.75821 -11.60479 -11.49936 -11.39150 -11.30457 -11.26476 -11.15810 -11.12227 -10.98886 -10.79890 -10.62934 -10.45199 -10.22583 -9.99518 -9.80480 -9.73830 -9.35728 -8.69772 -8.64677 -8.31127 -6.13624 -4.14391 2.61241 2.91874 3.23319 3.31824 3.32064 3.64918 3.74181 3.96132 4.35183 4.38100 4.46918 4.61734 4.67886 4.75841 4.82374 4.90207 4.96033 5.02491 5.07717 5.16914 5.21174 5.28083 5.33798 5.39005 5.43491 5.53068 5.56685 5.57764 5.65342 5.73983 5.77552 5.78676 5.82929 5.86346 5.88724 5.90383 5.96644 5.97507 6.04429 6.12017 6.16599 6.22639 6.26835 6.34308 6.42041 6.89668 6.91797 7.07107 7.08998 7.48209 7.60206 8.14845 8.37412 8.49245 8.89700 9.46282 10.99408 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010269 B = 0.004940 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.034579 B = 5666.411204 C = 6732.698380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C 0.528 3.472 4 O -0.542 6.542 5 N -0.614 5.614 6 C 0.097 3.903 7 C -0.130 4.130 8 C -0.123 4.123 9 C 0.155 3.845 10 H 0.074 0.926 11 C 0.050 3.950 12 H 0.067 0.933 13 C -0.115 4.115 14 C -0.121 4.121 15 C 0.029 3.971 16 N -0.500 5.500 17 C 0.043 3.957 18 C 0.020 3.980 19 H 0.103 0.897 20 C 0.254 3.746 21 N -0.468 5.468 22 C -0.003 4.003 23 C -0.526 4.526 24 H 0.074 0.926 25 C 0.073 3.927 26 N -0.896 5.896 27 Si 0.874 3.126 28 H -0.276 1.276 29 H -0.286 1.286 30 H -0.263 1.263 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.085 0.915 50 H 0.035 0.965 51 H 0.018 0.982 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 12.485 -16.166 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.318 3.682 4 O -0.419 6.419 5 N -0.348 5.348 6 C -0.025 4.025 7 C -0.168 4.168 8 C -0.161 4.161 9 C 0.051 3.949 10 H 0.092 0.908 11 C -0.059 4.059 12 H 0.085 0.915 13 C -0.154 4.154 14 C -0.159 4.159 15 C -0.099 4.099 16 N -0.224 5.224 17 C -0.086 4.086 18 C -0.002 4.002 19 H 0.121 0.879 20 C -0.063 4.063 21 N -0.145 5.145 22 C -0.042 4.042 23 C -0.564 4.564 24 H 0.092 0.908 25 C -0.130 4.130 26 N -0.534 5.534 27 Si 0.701 3.299 28 H -0.202 1.202 29 H -0.212 1.212 30 H -0.187 1.187 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.053 0.947 51 H 0.036 0.964 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.873 12.012 -16.799 20.670 hybrid contribution -2.004 -0.275 0.337 2.050 sum -2.876 11.737 -16.463 20.422 Atomic orbital electron populations 1.21517 0.92921 1.01670 1.03160 1.21698 0.98655 0.93733 1.04551 1.20452 0.80338 0.91908 0.75522 1.90674 1.54426 1.46675 1.50146 1.48688 1.05100 1.08427 1.72577 1.22436 0.87182 0.91208 1.01691 1.22701 0.97964 0.96430 0.99680 1.22678 0.93648 0.96509 1.03310 1.21496 0.93329 0.84084 0.95988 0.90806 1.22941 0.98132 0.93016 0.91827 0.91543 1.22266 1.00750 0.95007 0.97343 1.22250 1.01695 0.96963 0.94993 1.23174 1.01093 0.91215 0.94435 1.65331 1.47632 1.04697 1.04758 1.22615 0.94875 0.92322 0.98826 1.18951 0.86728 0.98370 0.96145 0.87907 1.28591 0.93906 0.91741 0.92054 1.80910 1.12047 1.10615 1.10933 1.19625 0.95373 0.92091 0.97135 1.20995 1.07619 1.13625 1.14178 0.90791 1.24973 0.97339 0.96134 0.94528 1.69902 1.38992 1.21757 1.22747 0.86862 0.84560 0.79652 0.78794 1.20177 1.21194 1.18731 0.92023 0.91843 0.92234 0.89166 0.88504 0.90882 0.90490 0.91246 0.89751 0.87768 0.90996 0.90918 0.91479 0.91090 0.91523 0.89704 0.93436 0.93228 0.89692 0.94732 0.96401 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.15 -1.64 5.51 -27.88 -0.15 -1.79 16 3 C 0.53 7.06 6.57 -10.98 -0.07 6.99 16 4 O -0.54 -8.78 15.18 5.56 0.08 -8.69 16 5 N -0.61 -7.40 1.72 -162.94 -0.28 -7.68 16 6 C 0.10 1.09 6.17 -2.47 -0.02 1.07 16 7 C -0.13 -1.28 7.08 -24.58 -0.17 -1.46 16 8 C -0.12 -1.27 5.40 -24.90 -0.13 -1.40 16 9 C 0.15 1.76 2.68 -66.96 -0.18 1.58 16 10 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 11 C 0.05 0.60 2.13 -66.07 -0.14 0.46 16 12 H 0.07 0.95 6.78 -51.93 -0.35 0.60 16 13 C -0.12 -1.11 6.41 -25.35 -0.16 -1.27 16 14 C -0.12 -1.15 7.00 -25.34 -0.18 -1.33 16 15 C 0.03 0.33 5.70 -2.13 -0.01 0.32 16 16 N -0.50 -6.41 3.32 -222.06 -0.74 -7.15 16 17 C 0.04 0.64 4.01 -3.82 -0.02 0.62 16 18 C 0.02 0.35 2.21 -93.41 -0.21 0.15 16 19 H 0.10 1.78 7.02 -51.93 -0.36 1.42 16 20 C 0.25 4.94 13.03 -20.82 -0.27 4.67 16 21 N -0.47 -9.70 18.52 42.08 0.78 -8.92 16 22 C 0.00 -0.07 3.49 -27.88 -0.10 -0.17 16 23 C -0.53 -13.98 9.15 -34.44 -0.32 -14.30 16 24 H 0.07 2.16 7.84 -52.48 -0.41 1.75 16 25 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 26 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 27 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.09 0.82 7.77 -51.93 -0.40 0.41 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.69 7.51 -51.93 -0.39 0.30 16 37 H 0.08 1.04 6.43 -51.93 -0.33 0.71 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 1.29 6.73 -51.93 -0.35 0.94 16 41 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 42 H 0.07 0.64 7.10 -51.93 -0.37 0.27 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 1.02 7.64 -51.93 -0.40 0.63 16 47 H 0.05 0.56 7.84 -51.92 -0.41 0.16 16 48 H 0.05 0.75 7.91 -51.93 -0.41 0.33 16 49 H 0.08 1.26 3.56 -51.93 -0.18 1.08 16 50 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 51 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 52 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -31.29 398.77 -8.87 -40.16 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.95 Total: 1.57 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.88 Total: -5.09 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.54 Total: -49.72 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.29 -8.87 -40.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072268761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.659 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds