Wall clock time and date at job start Tue Mar 31 2020 05:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47200 * 2 1 4 4 O 1.21285 * 119.99724 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00300 * 179.97438 * 3 2 1 6 6 C 1.47425 * 125.64529 * 0.04200 * 5 3 2 7 7 C 1.54911 * 104.83039 * 155.83626 * 6 5 3 8 8 C 1.55403 * 101.66611 * 36.92342 * 7 6 5 9 9 C 1.47022 * 125.64908 * 180.02562 * 5 3 2 10 10 H 1.08996 * 109.88226 * 300.67110 * 9 5 3 11 11 C 1.53008 * 109.88129 * 61.67866 * 9 5 3 12 12 H 1.09001 * 110.00922 * 303.58084 * 11 9 5 13 13 C 1.54315 * 109.88634 * 64.69688 * 11 9 5 14 14 C 1.55137 * 103.01894 * 141.68941 * 13 11 9 15 15 C 1.54904 * 101.65640 * 324.34457 * 14 13 11 16 16 N 1.47439 * 109.88674 * 182.46256 * 11 9 5 17 17 C 1.46902 * 111.00069 * 3.85303 * 16 11 9 18 18 C 1.53001 * 109.46966 * 162.59968 * 17 16 11 19 19 H 1.08999 * 109.47451 * 55.00359 * 18 17 16 20 20 C 1.47201 * 109.47453 * 295.00081 * 18 17 16 21 21 N 8.13972 * 98.61850 * 356.65381 * 2 1 3 22 22 C 1.52995 * 109.47109 * 175.00107 * 18 17 16 23 23 C 1.50698 * 109.47584 * 184.99931 * 22 18 17 24 24 H 1.08006 * 119.99852 * 0.02562 * 23 22 18 25 25 C 1.37878 * 120.00708 * 179.97438 * 23 22 18 26 26 N 1.31509 * 120.00325 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99490 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47578 * 89.99591 * 27 25 23 29 29 H 1.48509 * 109.46662 * 209.99623 * 27 25 23 30 30 H 1.48500 * 109.47304 * 329.99053 * 27 25 23 31 31 H 1.08999 * 109.47247 * 299.99645 * 1 2 3 32 32 H 1.08997 * 109.47370 * 60.00113 * 1 2 3 33 33 H 1.09005 * 109.47152 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46967 * 239.99911 * 2 1 3 35 35 H 1.09000 * 109.47086 * 120.00324 * 2 1 3 36 36 H 1.09000 * 110.36697 * 274.67464 * 6 5 3 37 37 H 1.08999 * 110.36395 * 37.00037 * 6 5 3 38 38 H 1.09000 * 111.00175 * 155.08408 * 7 6 5 39 39 H 1.09001 * 111.00236 * 278.93965 * 7 6 5 40 40 H 1.08999 * 110.85636 * 206.30009 * 8 7 6 41 41 H 1.09003 * 110.69529 * 82.95075 * 8 7 6 42 42 H 1.09009 * 110.70852 * 260.06919 * 13 11 9 43 43 H 1.09000 * 110.71171 * 23.30432 * 13 11 9 44 44 H 1.09006 * 110.99351 * 82.43497 * 14 13 11 45 45 H 1.09003 * 110.99180 * 206.25407 * 14 13 11 46 46 H 1.08998 * 110.37247 * 278.24460 * 15 14 13 47 47 H 1.08997 * 110.37761 * 155.89749 * 15 14 13 48 48 H 1.08994 * 109.47273 * 282.59740 * 17 16 11 49 49 H 1.08997 * 109.47102 * 42.60550 * 17 16 11 50 50 H 1.09002 * 109.47370 * 305.00113 * 22 18 17 51 51 H 1.09005 * 109.47290 * 65.00164 * 22 18 17 52 52 H 0.96997 * 120.00139 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4210 0.6463 0.0002 7 6 5.6534 1.3578 -0.6120 8 6 5.5105 2.7912 -0.0289 9 6 3.9815 2.9983 0.0011 10 1 3.6657 3.5561 -0.8804 11 6 3.5839 3.7588 1.2679 12 1 2.4980 3.8195 1.3410 13 6 4.1547 3.0436 2.5104 14 6 4.5786 4.2210 3.4274 15 6 5.0774 5.2599 2.3923 16 7 4.1615 5.1151 1.2407 17 6 4.8643 5.3627 -0.0253 18 6 5.0682 6.8678 -0.2094 19 1 5.5842 7.2737 0.6607 20 6 3.7597 7.5262 -0.3552 21 7 2.7498 8.0341 -0.4697 22 6 5.9080 7.1191 -1.4634 23 6 6.2125 8.5906 -1.5777 24 1 5.8442 9.2778 -0.8303 25 6 6.9620 9.0594 -2.6357 26 7 7.2282 10.3435 -2.7350 27 14 7.5995 7.8707 -3.9279 28 1 6.5988 7.7401 -5.0172 29 1 8.8756 8.3850 -4.4870 30 1 7.8313 6.5419 -3.3067 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.6368 0.3229 1.0186 37 1 4.1298 -0.2048 -0.6153 38 1 6.5799 0.8903 -0.2787 39 1 5.5948 1.3734 -1.7003 40 1 5.9864 3.5243 -0.6801 41 1 5.9258 2.8407 0.9777 42 1 3.3878 2.4368 2.9922 43 1 5.0176 2.4341 2.2420 44 1 3.7265 4.6061 3.9876 45 1 5.3831 3.9224 4.0995 46 1 6.1013 5.0361 2.0931 47 1 5.0129 6.2671 2.8041 48 1 5.8335 4.8644 -0.0064 49 1 4.2712 4.9726 -0.8524 50 1 6.8407 6.5593 -1.3943 51 1 5.3532 6.7935 -2.3434 52 1 7.7552 10.6734 -3.4795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072268763.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:08 Heat of formation + Delta-G solvation = 9.291662 kcal Electronic energy + Delta-G solvation = -30513.034829 eV Core-core repulsion = 26705.961679 eV Total energy + Delta-G solvation = -3807.073150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24914 -39.22094 -37.23422 -36.23301 -33.89982 -33.19942 -32.61259 -31.70148 -31.12477 -30.35312 -27.21012 -26.80768 -25.33776 -23.59322 -22.98666 -22.15126 -21.49038 -20.75438 -20.17876 -18.64963 -17.33901 -17.04765 -16.77455 -16.55618 -16.01405 -15.61534 -15.51495 -14.81270 -14.55022 -14.27360 -14.15394 -13.77112 -13.51907 -13.49395 -13.22042 -12.94332 -12.66956 -12.64845 -12.47724 -12.43774 -12.13001 -11.97191 -11.91466 -11.59747 -11.51072 -11.46941 -11.44170 -11.37214 -11.29929 -11.13892 -11.02354 -10.81755 -10.69712 -10.41344 -10.16041 -9.95823 -9.90343 -9.70673 -9.30352 -8.88589 -8.60542 -8.10812 -6.09125 -4.09402 2.47560 2.70122 3.26481 3.32673 3.34430 3.79095 3.87810 4.01442 4.08083 4.22283 4.38651 4.46538 4.53512 4.61852 4.63967 4.76233 4.77821 4.79876 4.88128 4.95963 5.00070 5.07899 5.23870 5.25593 5.28869 5.32596 5.44795 5.47969 5.49913 5.51950 5.56020 5.59963 5.65173 5.67624 5.76816 5.78471 5.88275 5.91554 5.97343 6.00375 6.05773 6.11390 6.24477 6.32734 6.39142 6.94191 7.04404 7.14273 7.15092 7.32691 7.65633 8.02217 8.43266 8.65338 8.95448 9.50654 11.04154 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.003424 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.232918 B = 8175.576377 C = 8550.372606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.523 3.477 4 O -0.530 6.530 5 N -0.613 5.613 6 C 0.099 3.901 7 C -0.134 4.134 8 C -0.150 4.150 9 C 0.119 3.881 10 H 0.089 0.911 11 C 0.067 3.933 12 H 0.097 0.903 13 C -0.136 4.136 14 C -0.129 4.129 15 C 0.039 3.961 16 N -0.517 5.517 17 C 0.031 3.969 18 C 0.023 3.977 19 H 0.104 0.896 20 C 0.252 3.748 21 N -0.471 5.471 22 C -0.005 4.005 23 C -0.526 4.526 24 H 0.074 0.926 25 C 0.071 3.929 26 N -0.897 5.897 27 Si 0.877 3.123 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.263 1.263 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.035 0.965 51 H 0.019 0.981 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -27.728 9.549 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.312 3.688 4 O -0.406 6.406 5 N -0.349 5.349 6 C -0.024 4.024 7 C -0.172 4.172 8 C -0.187 4.187 9 C 0.015 3.985 10 H 0.106 0.894 11 C -0.042 4.042 12 H 0.115 0.885 13 C -0.174 4.174 14 C -0.167 4.167 15 C -0.088 4.088 16 N -0.241 5.241 17 C -0.097 4.097 18 C 0.001 3.999 19 H 0.121 0.879 20 C -0.065 4.065 21 N -0.148 5.148 22 C -0.044 4.044 23 C -0.563 4.563 24 H 0.092 0.908 25 C -0.131 4.131 26 N -0.535 5.535 27 Si 0.704 3.296 28 H -0.203 1.203 29 H -0.213 1.213 30 H -0.188 1.188 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.053 0.947 51 H 0.038 0.962 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.985 -25.961 9.300 27.863 hybrid contribution 1.506 -1.204 -0.849 2.107 sum -2.479 -27.165 8.451 28.557 Atomic orbital electron populations 1.21541 0.92955 1.01491 1.03558 1.21609 0.98572 0.93682 1.03968 1.20480 0.80397 0.91900 0.76055 1.90759 1.54200 1.46518 1.49082 1.48591 1.05061 1.07438 1.73808 1.22345 0.87558 0.91607 1.00852 1.22846 0.97484 0.95634 1.01247 1.23425 0.94407 0.97696 1.03215 1.22338 0.92633 0.83964 0.99539 0.89365 1.22774 1.01410 0.86994 0.93029 0.88489 1.22924 1.00738 0.97880 0.95891 1.22689 1.01174 0.95396 0.97423 1.23182 0.94633 1.00212 0.90822 1.63764 1.32905 1.24797 1.02628 1.23158 0.98272 0.95858 0.92441 1.18954 0.86532 0.91568 1.02829 0.87853 1.28719 0.93790 0.92338 0.91679 1.81008 1.13302 1.10240 1.10248 1.19637 0.94492 0.98990 0.91239 1.21032 1.33641 0.90799 1.10869 0.90765 1.24991 0.95591 0.94956 0.97586 1.69904 1.39130 1.13094 1.31418 0.86827 0.78591 0.81842 0.82315 1.20264 1.21293 1.18792 0.91910 0.91894 0.92144 0.89176 0.89186 0.91345 0.90612 0.89683 0.90328 0.88159 0.89490 0.91593 0.90826 0.90845 0.90977 0.92973 0.89849 0.91214 0.89853 0.94688 0.96241 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.14 -1.01 5.43 -27.89 -0.15 -1.16 16 3 C 0.52 5.93 7.64 -10.99 -0.08 5.85 16 4 O -0.53 -8.50 14.98 5.55 0.08 -8.41 16 5 N -0.61 -5.91 2.82 -163.01 -0.46 -6.37 16 6 C 0.10 0.60 6.70 -2.53 -0.02 0.58 16 7 C -0.13 -0.82 7.09 -24.45 -0.17 -1.00 16 8 C -0.15 -1.26 4.36 -24.76 -0.11 -1.36 16 9 C 0.12 1.32 2.05 -66.95 -0.14 1.18 16 10 H 0.09 1.21 6.01 -51.93 -0.31 0.90 16 11 C 0.07 0.83 3.19 -66.72 -0.21 0.61 16 12 H 0.10 1.55 6.79 -51.93 -0.35 1.19 16 13 C -0.14 -1.29 5.84 -24.91 -0.15 -1.44 16 14 C -0.13 -1.22 7.08 -24.60 -0.17 -1.40 16 15 C 0.04 0.44 6.09 -2.30 -0.01 0.43 16 16 N -0.52 -7.06 4.80 -223.35 -1.07 -8.13 16 17 C 0.03 0.44 2.52 -3.82 -0.01 0.43 16 18 C 0.02 0.43 2.28 -93.41 -0.21 0.21 16 19 H 0.10 1.81 7.65 -51.93 -0.40 1.42 16 20 C 0.25 5.52 13.67 -20.75 -0.28 5.24 16 21 N -0.47 -11.43 18.54 42.16 0.78 -10.65 16 22 C 0.00 -0.10 3.49 -27.89 -0.10 -0.20 16 23 C -0.53 -14.26 9.15 -34.44 -0.32 -14.57 16 24 H 0.07 2.23 7.84 -52.48 -0.41 1.81 16 25 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 26 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 27 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.50 7.85 -51.93 -0.41 0.09 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.33 7.48 -51.93 -0.39 -0.05 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.91 5.78 -51.93 -0.30 0.61 16 41 H 0.09 0.67 5.55 -51.93 -0.29 0.39 16 42 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.07 0.60 5.55 -51.93 -0.29 0.31 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.07 0.83 4.49 -51.93 -0.23 0.59 16 49 H 0.08 1.24 5.46 -51.93 -0.28 0.96 16 50 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 51 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 52 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -34.79 395.05 -9.13 -43.92 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.63 Total: -0.32 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.89 Total: -5.45 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.02 Total: -51.60 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.79 -9.13 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072268763.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.211 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds