Wall clock time and date at job start Tue Mar 31 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 C 1.53008 * 109.46977 * 120.00236 * 2 1 3 5 5 H 1.09000 * 109.46823 * 180.50151 * 4 2 1 6 6 C 1.50697 * 109.47091 * 60.50239 * 4 2 1 7 7 H 1.08003 * 119.99858 * 245.63132 * 6 4 2 8 8 C 1.37872 * 120.00266 * 65.63355 * 6 4 2 9 9 N 1.31513 * 119.99917 * 355.19564 * 8 6 4 10 10 Si 1.86801 * 120.00176 * 175.19737 * 8 6 4 11 11 H 1.48500 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47360 * 119.99791 * 10 8 6 13 13 H 1.48497 * 109.47294 * 240.00142 * 10 8 6 14 14 O 1.45197 * 109.47036 * 300.50058 * 4 2 1 15 15 C 1.34230 * 117.00038 * 270.00156 * 14 4 2 16 16 O 1.20829 * 119.99679 * 0.02562 * 15 14 4 17 17 C 1.50696 * 120.00111 * 179.97438 * 15 14 4 18 18 C 1.52995 * 109.47305 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47652 * 180.02562 * 18 17 15 20 20 N 1.27932 * 124.23647 * 89.69605 * 19 18 17 21 21 C 1.34668 * 117.84193 * 179.81425 * 20 19 18 22 22 C 1.40971 * 129.68226 * 180.17586 * 21 20 19 23 23 C 1.36185 * 120.41788 * 180.34021 * 22 21 20 24 24 C 1.38783 * 120.78001 * 359.96339 * 23 22 21 25 25 C 1.37653 * 120.06822 * 0.02562 * 24 23 22 26 26 C 1.39331 * 119.95448 * 0.02562 * 25 24 23 27 27 S 1.70644 * 124.23888 * 270.00365 * 19 18 17 28 28 H 1.09004 * 109.47194 * 299.99923 * 1 2 3 29 29 H 1.08997 * 109.47307 * 60.00064 * 1 2 3 30 30 H 1.09000 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46997 * 239.99629 * 2 1 3 32 32 H 1.09002 * 109.46638 * 184.58616 * 3 2 1 33 33 H 1.08996 * 109.47085 * 304.57844 * 3 2 1 34 34 H 1.08995 * 109.46858 * 64.58344 * 3 2 1 35 35 H 0.97005 * 119.99727 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47346 * 300.00419 * 17 15 14 37 37 H 1.09005 * 109.46633 * 60.00293 * 17 15 14 38 38 H 1.09004 * 109.47231 * 300.00494 * 18 17 15 39 39 H 1.09001 * 109.47179 * 60.00095 * 18 17 15 40 40 H 1.07997 * 119.78995 * 0.32562 * 22 21 20 41 41 H 1.08001 * 119.60774 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.96268 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.01941 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1300 -0.7135 1.2538 6 6 1.5479 -2.1457 1.2430 7 1 0.8533 -2.4804 1.9994 8 6 1.9842 -3.0216 0.2718 9 7 2.7546 -2.5915 -0.7034 10 14 1.4810 -4.8192 0.3409 11 1 0.6188 -5.0465 1.5284 12 1 0.7303 -5.1709 -0.8911 13 1 2.6944 -5.6694 0.4409 14 8 1.5462 -0.0438 2.4348 15 6 2.3106 0.9380 2.9384 16 8 3.3573 1.2221 2.4059 17 6 1.8626 1.6865 4.1672 18 6 2.9073 2.7440 4.5293 19 6 2.4597 3.4923 5.7585 20 7 2.7419 3.1429 6.9563 21 6 2.2773 3.9097 7.9612 22 6 2.4379 3.7627 9.3540 23 6 1.8732 4.6575 10.2114 24 6 1.1315 5.7286 9.7332 25 6 0.9583 5.8973 8.3780 26 6 1.5278 4.9913 7.4858 27 16 1.5067 4.9075 5.7271 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1269 1.4435 -0.0822 33 1 1.6113 1.9794 -0.8461 34 1 1.7453 1.9320 0.9282 35 1 3.0613 -3.2077 -1.3870 36 1 0.9072 2.1721 3.9687 37 1 1.7500 0.9886 4.9969 38 1 3.8625 2.2580 4.7279 39 1 3.0204 3.4420 3.6997 40 1 3.0121 2.9352 9.7435 41 1 2.0042 4.5321 11.2760 42 1 0.6899 6.4306 10.4250 43 1 0.3807 6.7309 8.0068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072310786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:47 Heat of formation + Delta-G solvation = -49.829088 kcal Electronic energy + Delta-G solvation = -25341.932803 eV Core-core repulsion = 21671.089916 eV Total energy + Delta-G solvation = -3670.842887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63665 -39.75329 -37.49884 -36.23865 -33.98178 -33.50178 -32.12734 -31.44302 -29.72653 -27.53839 -26.30519 -25.90003 -24.07363 -23.05650 -22.56198 -21.01563 -20.14006 -18.80031 -18.67568 -17.08755 -16.87626 -16.65417 -15.84800 -15.71604 -15.50454 -15.23009 -14.89107 -14.41690 -14.31176 -14.00149 -13.39526 -13.17685 -12.83321 -12.71824 -12.60500 -12.54464 -12.23833 -11.93978 -11.68357 -11.36777 -11.31334 -11.24898 -11.14258 -11.05418 -10.97738 -10.64299 -10.41747 -10.25644 -10.13662 -9.83677 -9.66719 -9.55113 -9.27140 -8.90029 -8.80716 -8.41884 -8.41122 -6.18883 -4.23524 0.13083 0.81972 0.98956 1.48779 2.06244 2.98719 3.23443 3.30471 3.33655 3.37852 3.46884 3.83295 4.29417 4.34870 4.55967 4.73431 4.85133 4.91509 4.95429 5.04050 5.14188 5.21871 5.46386 5.54775 5.75003 5.80680 5.85159 5.88567 5.98600 6.03372 6.12120 6.19745 6.25764 6.36373 6.52812 6.72008 6.84873 6.97679 7.05915 7.29380 7.40122 7.47184 7.62193 7.67390 7.94074 8.15591 8.63035 8.90012 9.40772 10.88779 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.002345 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.759017 B =11935.592195 C =12570.753763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.226 3.774 5 H 0.049 0.951 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.886 5.886 10 Si 0.906 3.094 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.282 1.282 14 O -0.352 6.352 15 C 0.455 3.545 16 O -0.518 6.518 17 C -0.111 4.111 18 C -0.038 4.038 19 C 0.106 3.894 20 N -0.466 5.466 21 C 0.085 3.915 22 C -0.064 4.064 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.071 4.071 26 C -0.188 4.188 27 S 0.105 5.895 28 H 0.036 0.964 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 17.122 16.948 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.127 4.127 3 C -0.197 4.197 4 C 0.173 3.827 5 H 0.066 0.934 6 C -0.553 4.553 7 H 0.087 0.913 8 C -0.138 4.138 9 N -0.524 5.524 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.208 1.208 14 O -0.268 6.268 15 C 0.298 3.702 16 O -0.408 6.408 17 C -0.151 4.151 18 C -0.079 4.079 19 C -0.179 4.179 20 N -0.179 5.179 21 C -0.036 4.036 22 C -0.085 4.085 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.093 4.093 26 C -0.306 4.306 27 S 0.362 5.638 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.478 17.177 15.798 23.595 hybrid contribution 0.025 -1.065 0.746 1.301 sum -3.453 16.112 16.544 23.350 Atomic orbital electron populations 1.21590 0.96618 1.01579 0.98334 1.21590 0.95130 0.93683 1.02288 1.21938 1.00869 0.97872 0.99006 1.20684 0.95950 0.89540 0.76501 0.93357 1.20980 1.28058 0.92865 1.13423 0.91344 1.24860 0.94940 0.99214 0.94825 1.69919 1.34554 1.35245 1.12662 0.86305 0.78402 0.83815 0.78156 1.19492 1.20806 1.20778 1.86464 1.49875 1.44596 1.45823 1.22977 0.82838 0.79656 0.84731 1.90623 1.24257 1.65347 1.60580 1.21253 0.99882 0.97700 0.96228 1.20205 1.00256 0.96839 0.90597 1.26739 0.97884 0.96929 0.96333 1.66226 1.23204 1.30092 0.98359 1.19244 0.98195 0.91691 0.94421 1.20434 0.99354 0.99758 0.88966 1.20736 0.97577 0.94537 1.00069 1.21131 0.98846 0.98226 0.94593 1.20352 0.99021 0.97702 0.92239 1.23944 1.06820 1.02468 0.97413 1.84061 1.52798 1.27053 0.99909 0.94444 0.95490 0.91907 0.87440 0.92927 0.94739 0.94775 0.92489 0.88072 0.87551 0.87264 0.88144 0.84728 0.84799 0.84815 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.81 37.16 0.33 -2.32 16 2 C -0.11 -2.55 2.65 -90.62 -0.24 -2.79 16 3 C -0.14 -2.93 7.88 37.16 0.29 -2.64 16 4 C 0.23 5.77 1.92 -27.88 -0.05 5.72 16 5 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 6 C -0.52 -13.95 7.59 -34.44 -0.26 -14.21 16 7 H 0.07 1.85 7.82 -52.48 -0.41 1.44 16 8 C 0.06 1.72 5.36 -17.82 -0.10 1.63 16 9 N -0.89 -24.63 11.56 55.43 0.64 -23.99 16 10 Si 0.91 20.84 29.54 -169.99 -5.02 15.81 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 O -0.35 -7.97 9.05 -39.26 -0.36 -8.33 16 15 C 0.46 8.88 6.20 36.00 0.22 9.10 16 16 O -0.52 -11.20 13.21 -18.75 -0.25 -11.45 16 17 C -0.11 -1.58 5.79 -27.89 -0.16 -1.74 16 18 C -0.04 -0.49 5.06 -27.89 -0.14 -0.63 16 19 C 0.11 1.33 6.54 -13.90 -0.09 1.24 16 20 N -0.47 -6.46 10.57 -9.08 -0.10 -6.56 16 21 C 0.08 1.05 7.00 -84.96 -0.59 0.46 16 22 C -0.06 -0.63 10.05 -39.29 -0.39 -1.02 16 23 C -0.11 -0.79 9.94 -40.12 -0.40 -1.19 16 24 C -0.11 -0.73 10.04 -39.59 -0.40 -1.13 16 25 C -0.07 -0.60 10.07 -39.39 -0.40 -0.99 16 26 C -0.19 -2.08 6.56 -38.55 -0.25 -2.33 16 27 S 0.10 1.12 23.11 -107.50 -2.48 -1.36 16 28 H 0.04 0.75 7.67 -51.93 -0.40 0.36 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.43 7.23 -51.93 -0.38 1.05 16 31 H 0.11 2.83 6.34 -51.93 -0.33 2.50 16 32 H 0.05 1.16 7.80 -51.93 -0.41 0.75 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.68 5.75 -51.93 -0.30 0.38 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.11 1.50 8.10 -51.93 -0.42 1.08 16 39 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -30.84 368.87 -10.59 -41.43 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.95 Total: 1.73 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.64 Total: -12.85 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.54 Total: -30.54 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.60 Total: -19.78 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.48 Total: -1.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.84 -10.59 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.401 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds