Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86798 * 119.99578 * 2 1 4 4 H 1.48500 * 109.47321 * 240.00122 * 3 2 1 5 5 H 1.48506 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46941 * 120.00240 * 3 2 1 7 7 C 1.39886 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99828 * 191.02849 * 7 2 1 9 9 C 1.41219 * 120.00150 * 11.02444 * 7 2 1 10 10 C 1.40837 * 120.17766 * 29.38454 * 9 7 2 11 11 C 1.36437 * 119.80966 * 180.02562 * 10 9 7 12 12 C 1.39303 * 120.18469 * 0.27411 * 11 10 9 13 13 O 1.35676 * 119.81758 * 179.72735 * 12 11 10 14 14 C 1.42897 * 117.00353 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47555 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99504 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00391 * 179.97438 * 15 14 13 18 18 C 1.47082 * 120.87779 * 359.72630 * 17 15 14 19 19 C 1.53702 * 108.27701 * 128.75491 * 18 17 15 20 20 N 1.46899 * 109.25513 * 54.07812 * 19 18 17 21 21 C 1.46903 * 110.99768 * 172.60888 * 20 19 18 22 22 C 1.52997 * 109.47465 * 200.05888 * 21 20 19 23 23 O 1.42900 * 109.47068 * 64.66164 * 22 21 20 24 24 C 1.46895 * 111.26981 * 296.75532 * 20 19 18 25 25 C 1.47078 * 120.88442 * 179.97438 * 17 15 14 26 26 C 1.39311 * 120.36612 * 359.44558 * 12 11 10 27 27 C 1.36438 * 120.18600 * 0.55671 * 26 12 11 28 28 H 0.96996 * 120.00870 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.09041 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.90407 * 180.02562 * 11 10 9 31 31 H 1.09005 * 109.47237 * 300.00218 * 14 13 12 32 32 H 1.09007 * 109.47282 * 59.99993 * 14 13 12 33 33 H 1.09000 * 109.62989 * 248.51661 * 18 17 15 34 34 H 1.08992 * 109.63201 * 9.10326 * 18 17 15 35 35 H 1.08998 * 109.64197 * 294.07690 * 19 18 17 36 36 H 1.08995 * 109.41904 * 173.94646 * 19 18 17 37 37 H 1.09003 * 109.47126 * 320.06020 * 21 20 19 38 38 H 1.09003 * 109.47066 * 80.05826 * 21 20 19 39 39 H 1.08996 * 109.47360 * 184.66554 * 22 21 20 40 40 H 1.09005 * 109.46862 * 304.66718 * 22 21 20 41 41 H 0.96694 * 114.00408 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.49730 * 303.14430 * 24 20 19 43 43 H 1.09002 * 109.51544 * 183.07864 * 24 20 19 44 44 H 1.08999 * 109.62395 * 350.90141 * 25 17 15 45 45 H 1.09004 * 109.62690 * 111.47913 * 25 17 15 46 46 H 1.08004 * 119.90933 * 180.28020 * 26 12 11 47 47 H 1.07994 * 120.09615 * 179.69751 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6966 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0733 -1.2200 0.1784 9 6 1.3219 -2.4231 -0.2349 10 6 0.1664 -2.4378 -1.0400 11 6 -0.4913 -3.6126 -1.2611 12 6 -0.0261 -4.7942 -0.6885 13 8 -0.6890 -5.9573 -0.9087 14 6 -0.1592 -7.1328 -0.2928 15 6 -1.0209 -8.3175 -0.6467 16 8 -1.9928 -8.1696 -1.3569 17 7 -0.7109 -9.5412 -0.1750 18 6 0.4673 -9.7437 0.6819 19 6 0.0230 -10.5073 1.9397 20 7 -0.6720 -11.7380 1.5391 21 6 -0.9592 -12.5837 2.7054 22 6 -1.2082 -14.0211 2.2441 23 8 -0.0119 -14.5511 1.6698 24 6 -1.9003 -11.4371 0.7917 25 6 -1.5386 -10.7106 -0.5076 26 6 1.1194 -4.7893 0.1044 27 6 1.7888 -3.6230 0.3355 28 1 -0.4851 0.8399 0.0004 29 1 -0.1980 -1.5218 -1.4810 30 1 -1.3773 -3.6257 -1.8785 31 1 0.8570 -7.3030 -0.6488 32 1 -0.1480 -7.0025 0.7894 33 1 1.2165 -10.3240 0.1433 34 1 0.8835 -8.7775 0.9666 35 1 -0.6506 -9.8841 2.5278 36 1 0.8984 -10.7619 2.5372 37 1 -0.1091 -12.5631 3.3874 38 1 -1.8450 -12.2079 3.2174 39 1 -1.5024 -14.6310 3.0983 40 1 -2.0041 -14.0310 1.4993 41 1 -0.0966 -15.4612 1.3544 42 1 -2.5472 -10.8010 1.3959 43 1 -2.4202 -12.3658 0.5566 44 1 -2.4491 -10.3836 -1.0099 45 1 -0.9789 -11.3821 -1.1587 46 1 1.4761 -5.7105 0.5410 47 1 2.6738 -3.6201 0.9543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075572803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = -81.342970 kcal Electronic energy + Delta-G solvation = -28079.241102 eV Core-core repulsion = 24034.685983 eV Total energy + Delta-G solvation = -4044.555119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.42179 -38.97727 -38.21814 -36.91656 -36.24708 -34.72917 -33.29409 -31.73561 -30.44367 -29.87683 -29.09878 -28.04322 -26.33672 -24.76639 -23.94287 -22.53273 -21.60439 -20.91124 -20.59191 -19.07517 -17.85917 -17.72441 -17.23719 -16.75534 -16.15645 -16.03326 -15.92444 -15.35255 -15.14493 -15.07944 -14.60422 -14.43280 -14.22829 -13.95266 -13.65221 -13.38381 -13.17366 -12.92803 -12.69797 -12.32687 -12.20045 -12.10628 -11.98637 -11.72592 -11.65931 -11.44587 -11.37301 -11.20235 -11.11813 -10.94442 -10.69425 -10.36484 -9.99167 -9.84443 -9.68053 -9.30620 -9.08774 -9.02258 -8.58936 -7.66148 -6.99141 -6.66922 -4.28221 2.59165 2.60423 2.78865 2.93124 3.09477 3.12073 3.20807 3.40354 3.86401 3.97078 4.02008 4.47073 4.54913 4.61380 4.65544 4.70586 4.77495 4.89750 4.90850 4.92119 5.08388 5.18641 5.20967 5.29298 5.32879 5.35500 5.39824 5.52262 5.55057 5.64849 5.74079 6.00007 6.18197 6.25781 6.56585 6.62409 6.70012 6.95493 7.08787 7.17611 7.21418 7.29156 7.43916 7.55161 7.74654 8.00661 8.13194 8.20955 8.41557 8.63985 8.91095 8.97140 10.28319 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.001909 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.401438 B =14660.012107 C =15241.247365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.087 3.913 10 C -0.124 4.124 11 C -0.118 4.118 12 C -0.006 4.006 13 O -0.304 6.304 14 C 0.053 3.947 15 C 0.520 3.480 16 O -0.517 6.517 17 N -0.618 5.618 18 C 0.110 3.890 19 C 0.041 3.959 20 N -0.529 5.529 21 C 0.053 3.947 22 C 0.083 3.917 23 O -0.559 6.559 24 C 0.040 3.960 25 C 0.120 3.880 26 C -0.172 4.172 27 C -0.192 4.192 28 H 0.280 0.720 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.374 0.626 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 -24.691 5.511 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.085 3.915 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.049 4.049 13 O -0.219 6.219 14 C -0.026 4.026 15 C 0.308 3.692 16 O -0.392 6.392 17 N -0.355 5.355 18 C -0.013 4.013 19 C -0.088 4.088 20 N -0.253 5.253 21 C -0.075 4.075 22 C 0.004 3.996 23 O -0.363 6.363 24 C -0.089 4.089 25 C -0.002 4.002 26 C -0.191 4.191 27 C -0.212 4.212 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.220 0.780 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.799 -24.077 4.857 24.628 hybrid contribution -0.190 0.518 0.842 1.007 sum -1.989 -23.559 5.699 24.320 Atomic orbital electron populations 1.69783 1.07337 1.29093 1.37206 1.25859 0.94835 1.01114 0.92557 0.86330 0.79946 0.80365 0.79780 1.18970 1.20429 1.19184 1.19407 0.95835 0.90474 1.43791 0.90656 1.17621 0.92102 0.92241 0.89509 1.21027 0.97876 0.95809 0.99657 1.19870 1.00775 0.90565 1.02526 1.18664 0.95886 0.84508 1.05817 1.85943 1.52159 1.13337 1.70411 1.22122 0.96672 0.85172 0.98630 1.20434 0.85521 0.83437 0.79820 1.90708 1.27960 1.84325 1.36157 1.48070 1.28697 1.07228 1.51537 1.21986 0.87681 1.00927 0.90686 1.22597 0.99178 0.90390 0.96609 1.61865 1.23486 1.16763 1.23234 1.22162 1.01203 0.91982 0.92148 1.22153 0.87277 0.93747 0.96387 1.86596 1.35021 1.32936 1.81781 1.22558 0.91106 0.99856 0.95380 1.21620 0.96516 0.86075 0.96035 1.20383 0.97372 0.97980 1.03326 1.20608 1.02539 0.93004 1.05059 0.90932 0.85466 0.88213 0.90092 0.90269 0.89983 0.89084 0.94098 0.89175 0.89881 0.93089 0.93522 0.93718 0.78009 0.94248 0.89610 0.88572 0.90647 0.88857 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.12 10.89 55.54 0.60 -20.51 16 2 C 0.07 1.82 5.24 -17.34 -0.09 1.73 16 3 Si 0.91 18.85 29.57 -169.99 -5.03 13.82 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.29 9.05 -37.83 -0.34 -12.63 16 8 H 0.08 1.90 7.87 -52.49 -0.41 1.49 16 9 C 0.09 2.33 5.54 -106.80 -0.59 1.74 16 10 C -0.12 -3.27 8.60 -39.25 -0.34 -3.61 16 11 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16 12 C -0.01 -0.13 6.71 -38.79 -0.26 -0.39 16 13 O -0.30 -6.64 9.65 -38.64 -0.37 -7.01 16 14 C 0.05 0.87 3.58 36.01 0.13 1.00 16 15 C 0.52 8.32 7.78 -10.99 -0.09 8.23 16 16 O -0.52 -10.39 15.95 -14.35 -0.23 -10.62 16 17 N -0.62 -7.39 3.00 -172.21 -0.52 -7.91 16 18 C 0.11 1.00 6.53 -3.36 -0.02 0.97 16 19 C 0.04 0.33 5.60 -3.46 -0.02 0.31 16 20 N -0.53 -4.40 4.50 -234.05 -1.05 -5.45 16 21 C 0.05 0.35 5.39 -3.82 -0.02 0.33 16 22 C 0.08 0.47 7.24 37.16 0.27 0.74 16 23 O -0.56 -4.03 13.60 -35.23 -0.48 -4.51 16 24 C 0.04 0.33 5.44 -3.72 -0.02 0.31 16 25 C 0.12 1.25 6.59 -3.62 -0.02 1.22 16 26 C -0.17 -3.79 8.96 -39.83 -0.36 -4.14 16 27 C -0.19 -4.64 9.74 -39.25 -0.38 -5.02 16 28 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 29 H 0.13 3.43 6.27 -52.48 -0.33 3.10 16 30 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 31 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 32 H 0.08 1.15 7.19 -51.93 -0.37 0.77 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.74 6.02 -51.93 -0.31 0.43 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 37 H 0.08 0.56 7.77 -51.93 -0.40 0.15 16 38 H 0.05 0.30 8.00 -51.93 -0.42 -0.11 16 39 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.04 0.23 6.69 -51.93 -0.35 -0.11 16 41 H 0.37 1.10 9.12 45.56 0.42 1.51 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.58 6.63 -51.93 -0.34 0.24 16 44 H 0.10 1.12 7.06 -51.93 -0.37 0.75 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.69 6.27 -52.48 -0.33 1.36 16 47 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -33.52 379.81 -10.01 -43.53 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.11 Total: 5.48 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.55 Total: -12.54 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: -0.97 Total: -33.87 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.08 Total: -22.14 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.52 -10.01 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075572803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.815 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds