Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00073 * 2 1 4 4 H 1.48501 * 109.47084 * 269.99903 * 3 2 1 5 5 H 1.48496 * 109.46919 * 30.00313 * 3 2 1 6 6 H 1.48505 * 109.46801 * 149.99937 * 3 2 1 7 7 C 1.37879 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00312 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99658 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47332 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47193 * 180.02562 * 11 10 9 13 13 C 1.48064 * 111.00397 * 297.69297 * 12 11 10 14 14 C 1.53692 * 112.47250 * 192.19764 * 13 12 11 15 15 C 1.50806 * 112.10129 * 318.55468 * 14 13 12 16 16 N 1.47909 * 108.49839 * 92.54889 * 15 14 13 17 17 C 1.46902 * 110.99791 * 153.79339 * 16 15 14 18 18 C 1.50697 * 109.46811 * 297.96561 * 17 16 15 19 19 N 1.29949 * 126.28953 * 270.02533 * 18 17 16 20 20 O 1.21297 * 110.25001 * 179.68629 * 19 18 17 21 21 C 1.33647 * 109.81421 * 0.46846 * 20 19 18 22 22 C 1.50695 * 126.54843 * 179.80267 * 21 20 19 23 23 C 1.53002 * 117.50044 * 299.68293 * 22 21 20 24 24 C 1.53000 * 60.02940 * 107.50594 * 23 22 21 25 25 N 1.31129 * 106.89360 * 359.53742 * 21 20 19 26 26 C 1.40020 * 114.06496 * 280.07605 * 16 15 14 27 27 C 1.44575 * 110.99667 * 170.00069 * 12 11 10 28 28 H 0.97002 * 119.99387 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.46773 * 60.00396 * 9 7 2 30 30 H 1.08996 * 109.47259 * 300.00317 * 9 7 2 31 31 H 1.09002 * 109.47066 * 60.00140 * 10 9 7 32 32 H 1.08996 * 109.47604 * 300.00465 * 10 9 7 33 33 H 1.09009 * 109.46522 * 60.00783 * 11 10 9 34 34 H 1.08996 * 109.47303 * 300.00830 * 11 10 9 35 35 H 1.09007 * 108.87933 * 312.97025 * 13 12 11 36 36 H 1.09005 * 108.87851 * 71.42285 * 13 12 11 37 37 H 1.09006 * 108.95338 * 79.22847 * 14 13 12 38 38 H 1.08997 * 108.95597 * 197.96362 * 14 13 12 39 39 H 1.09008 * 109.62808 * 332.84417 * 15 14 13 40 40 H 1.08994 * 109.63247 * 212.25291 * 15 14 13 41 41 H 1.08995 * 109.46877 * 177.96520 * 17 16 15 42 42 H 1.08999 * 109.47114 * 57.96940 * 17 16 15 43 43 H 1.08999 * 115.55804 * 154.00130 * 22 21 20 44 44 H 1.09002 * 117.49918 * 0.02562 * 23 22 21 45 45 H 1.09002 * 117.49754 * 215.00777 * 23 22 21 46 46 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 47 47 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 48 48 H 1.08994 * 108.95715 * 182.47985 * 26 16 15 49 49 H 1.08998 * 108.96156 * 301.22717 * 26 16 15 50 50 H 1.09008 * 109.57270 * 100.54221 * 27 12 11 51 51 H 1.09001 * 109.68040 * 340.22806 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 7 6.0411 -4.0217 -0.0027 13 6 5.6133 -4.7363 1.2215 14 6 6.3438 -6.0760 1.4053 15 6 6.4833 -6.8291 0.1062 16 7 7.7823 -6.4736 -0.5052 17 6 8.2672 -7.5527 -1.3760 18 6 8.4902 -8.7975 -0.5565 19 7 9.5918 -9.1357 0.0443 20 8 9.4465 -10.1907 0.6250 21 6 8.2037 -10.6444 0.4360 22 6 7.6219 -11.9222 0.9834 23 6 8.2918 -13.2356 0.5744 24 6 8.4602 -12.7029 1.9988 25 7 7.5856 -9.7624 -0.3120 26 6 7.7788 -5.2471 -1.1806 27 6 7.4668 -4.0671 -0.2383 28 1 -0.4849 0.8401 -0.0004 29 1 3.8752 -0.6805 0.8890 30 1 3.8745 -0.6801 -0.8911 31 1 3.6578 -3.1506 -0.8907 32 1 3.6585 -3.1503 0.8891 33 1 5.9155 -2.1226 0.8874 34 1 5.9142 -2.1231 -0.8926 35 1 5.8128 -4.1041 2.0868 36 1 4.5411 -4.9240 1.1638 37 1 7.3368 -5.8849 1.8122 38 1 5.7846 -6.6903 2.1110 39 1 5.6728 -6.5504 -0.5674 40 1 6.4506 -7.9013 0.2992 41 1 9.2056 -7.2506 -1.8407 42 1 7.5270 -7.7551 -2.1502 43 1 6.5397 -11.9284 1.1135 44 1 9.1535 -13.1754 -0.0903 45 1 7.6502 -14.1057 0.4351 46 1 7.9290 -13.2223 2.7965 47 1 9.4326 -12.2926 2.2710 48 1 8.7576 -5.0894 -1.6334 49 1 7.0257 -5.2785 -1.9680 50 1 7.9890 -4.2077 0.7082 51 1 7.7925 -3.1350 -0.7000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075603313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = 110.906973 kcal Electronic energy + Delta-G solvation = -28650.530557 eV Core-core repulsion = 24782.437867 eV Total energy + Delta-G solvation = -3868.092690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.90042 -39.68796 -38.03802 -37.12331 -35.73875 -33.79201 -32.70735 -32.43488 -31.56208 -29.33031 -27.23155 -26.01654 -25.35791 -25.25785 -23.47120 -23.03011 -22.40952 -21.24858 -20.53049 -20.14983 -19.44062 -18.45013 -17.82224 -16.86642 -16.75881 -16.31341 -15.99349 -15.62448 -15.07737 -15.00183 -14.69275 -14.04493 -13.98620 -13.77183 -13.60618 -13.15108 -13.10281 -12.66702 -12.57692 -12.32313 -12.25446 -12.19765 -12.14345 -11.69029 -11.60982 -11.55716 -11.35311 -11.30738 -11.22094 -11.07707 -11.00446 -10.86164 -10.59458 -10.55367 -10.01935 -9.86326 -9.64263 -9.52052 -9.13711 -8.50737 -8.44138 -7.96901 -6.01222 -3.98625 0.78650 1.83824 2.37115 3.02304 3.26255 3.32318 3.39416 3.43311 3.66791 3.81927 4.06215 4.07543 4.20796 4.33038 4.47710 4.73121 4.80367 4.91269 4.98696 5.02465 5.11767 5.15858 5.16666 5.25030 5.32752 5.33350 5.37407 5.42351 5.44608 5.48991 5.64592 5.66759 5.68370 5.75553 5.76517 5.89286 5.98744 6.05579 6.12841 6.20604 6.26614 6.58418 6.63235 6.83653 6.95373 7.15563 7.34148 7.37973 7.48039 7.51364 7.83979 7.88764 8.58473 9.04522 9.61579 11.12372 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.001894 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.026461 B =14776.476686 C =15433.598067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.098 4.098 11 C 0.060 3.940 12 N -0.554 5.554 13 C 0.062 3.938 14 C -0.117 4.117 15 C 0.064 3.936 16 N -0.547 5.547 17 C 0.149 3.851 18 C 0.185 3.815 19 N -0.369 5.369 20 O 0.076 5.924 21 C 0.206 3.794 22 C -0.080 4.080 23 C -0.153 4.153 24 C -0.158 4.158 25 N -0.473 5.473 26 C 0.076 3.924 27 C 0.065 3.935 28 H 0.262 0.738 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.150 0.850 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.107 0.893 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.047 0.953 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.521 -26.241 1.460 33.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.067 4.067 12 N -0.279 5.279 13 C -0.065 4.065 14 C -0.156 4.156 15 C -0.063 4.063 16 N -0.273 5.273 17 C 0.021 3.979 18 C -0.088 4.088 19 N -0.076 5.076 20 O 0.017 5.983 21 C -0.013 4.013 22 C -0.100 4.100 23 C -0.191 4.191 24 C -0.196 4.196 25 N -0.207 5.207 26 C -0.054 4.054 27 C -0.064 4.064 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.168 0.832 44 H 0.121 0.879 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.126 0.874 48 H 0.088 0.912 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.861 -25.580 1.180 33.670 hybrid contribution 0.074 1.266 0.115 1.274 sum 21.936 -24.314 1.295 32.772 Atomic orbital electron populations 1.69925 1.06279 1.26779 1.51426 1.25049 0.94741 0.99162 0.94692 0.86764 0.80314 0.83650 0.78451 1.20330 1.21449 1.19112 1.21151 0.89540 0.94414 1.50411 0.91065 1.19555 0.97150 0.92423 0.96014 1.21477 0.91146 0.99427 1.01535 1.22350 0.97953 0.86452 0.99914 1.60752 1.12776 1.16384 1.37951 1.22411 1.00377 0.93646 0.90058 1.21428 1.00964 0.95838 0.97321 1.21908 0.88846 0.99448 0.96078 1.59207 1.30091 1.01771 1.36213 1.20237 1.02058 0.84271 0.91374 1.25649 0.85046 0.98260 0.99892 1.74657 1.23640 0.98020 1.11304 1.85282 1.31996 1.27214 1.53846 1.27627 0.82138 0.97192 0.94385 1.20334 0.99648 0.84000 1.06027 1.23172 1.02818 0.94748 0.98392 1.23194 1.01671 1.01549 0.93182 1.71875 1.30116 1.02603 1.16100 1.21000 1.00391 0.88326 0.95658 1.21848 0.88590 0.97154 0.98800 0.92818 0.96929 0.97127 0.92127 0.92909 0.95516 0.91272 0.94923 0.90388 0.91463 0.91349 0.92269 0.90566 0.88196 0.91283 0.83222 0.87940 0.86756 0.86779 0.87424 0.91207 0.94411 0.93426 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.99 4.99 -26.73 -0.13 -2.12 16 11 C 0.06 1.00 4.81 -3.82 -0.02 0.99 16 12 N -0.55 -8.13 3.96 -234.30 -0.93 -9.06 16 13 C 0.06 0.88 4.81 -2.82 -0.01 0.86 16 14 C -0.12 -1.44 5.36 -27.47 -0.15 -1.59 16 15 C 0.06 0.79 5.16 -4.37 -0.02 0.76 16 16 N -0.55 -6.32 4.09 -241.20 -0.99 -7.30 16 17 C 0.15 1.54 5.59 -4.98 -0.03 1.52 16 18 C 0.19 2.13 6.78 -156.37 -1.06 1.07 16 19 N -0.37 -4.43 12.16 30.90 0.38 -4.05 16 20 O 0.08 0.78 11.08 18.09 0.20 0.98 16 21 C 0.21 1.86 7.98 -13.06 -0.10 1.76 16 22 C -0.08 -0.41 6.33 -91.74 -0.58 -1.00 16 23 C -0.15 -0.49 10.23 -26.73 -0.27 -0.76 16 24 C -0.16 -0.50 10.18 -26.70 -0.27 -0.77 16 25 N -0.47 -5.29 10.24 -9.87 -0.10 -5.39 16 26 C 0.08 0.86 5.04 -6.75 -0.03 0.82 16 27 C 0.07 0.82 5.44 -4.44 -0.02 0.79 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 29 H 0.01 0.30 7.20 -51.92 -0.37 -0.07 16 30 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 1.08 6.71 -51.93 -0.35 0.73 16 33 H 0.03 0.45 8.06 -51.92 -0.42 0.03 16 34 H 0.07 1.12 7.79 -51.93 -0.40 0.71 16 35 H 0.03 0.47 7.97 -51.92 -0.41 0.06 16 36 H 0.08 1.18 6.98 -51.93 -0.36 0.82 16 37 H 0.07 0.87 7.23 -51.93 -0.38 0.49 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.81 7.57 -51.92 -0.39 0.42 16 40 H 0.08 0.96 5.66 -51.93 -0.29 0.66 16 41 H 0.10 0.89 7.85 -51.93 -0.41 0.48 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.15 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.11 0.18 8.14 -51.92 -0.42 -0.24 16 47 H 0.11 0.38 8.01 -51.93 -0.42 -0.04 16 48 H 0.07 0.66 7.82 -51.93 -0.41 0.26 16 49 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 50 H 0.05 0.62 6.93 -51.92 -0.36 0.26 16 51 H 0.07 0.86 7.41 -51.93 -0.38 0.48 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -33.17 397.72 -11.31 -44.49 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -8.72 Total: -3.79 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.25 Total: -11.72 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.87 Total: -53.41 kcal Atomic # 8 Polarization: 0.78 SS G_CDS: 0.20 Total: 0.98 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.17 -11.31 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.394 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds