Wall clock time and date at job start Tue Mar 31 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46905 * 2 1 4 4 N 1.40299 * 126.08814 * 270.28929 * 3 2 1 5 5 C 1.31075 * 108.26493 * 180.10813 * 4 3 2 6 6 C 1.39291 * 108.07792 * 359.60660 * 5 4 3 7 7 C 1.34326 * 126.09229 * 89.99566 * 3 2 1 8 8 C 1.50831 * 128.03379 * 0.12834 * 7 3 2 9 9 C 1.53365 * 108.37618 * 163.38570 * 8 7 3 10 10 C 1.53105 * 109.51100 * 49.94453 * 9 8 7 11 11 C 1.50844 * 127.89705 * 180.35541 * 6 5 4 12 12 H 1.08991 * 109.68584 * 283.12718 * 11 6 5 13 13 N 1.46911 * 109.68085 * 43.64527 * 11 6 5 14 14 C 1.46899 * 110.99629 * 204.27383 * 13 11 6 15 15 H 1.09002 * 109.47185 * 324.56684 * 14 13 11 16 16 C 1.53000 * 109.47413 * 84.56854 * 14 13 11 17 17 C 1.50702 * 109.46909 * 204.56672 * 14 13 11 18 18 O 1.21280 * 120.00018 * 0.02562 * 17 14 13 19 19 N 1.34775 * 119.99851 * 179.97438 * 17 14 13 20 20 C 1.46492 * 120.00208 * 0.02562 * 19 17 14 21 21 C 1.46502 * 119.99728 * 180.02562 * 19 17 14 22 22 C 1.50701 * 109.47246 * 90.00328 * 21 19 17 23 23 H 1.07999 * 119.99789 * 359.97438 * 22 21 19 24 24 C 1.37872 * 120.00011 * 180.02562 * 22 21 19 25 25 N 1.31518 * 120.00120 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 120.00219 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46702 * 90.00184 * 26 24 22 28 28 H 1.48492 * 109.47269 * 210.00216 * 26 24 22 29 29 H 1.48502 * 109.46803 * 330.00312 * 26 24 22 30 30 H 1.09000 * 109.46997 * 60.00558 * 1 2 3 31 31 H 1.09009 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47310 * 300.00221 * 1 2 3 33 33 H 1.08995 * 109.47310 * 239.99779 * 2 1 3 34 34 H 1.09000 * 109.46997 * 119.99442 * 2 1 3 35 35 H 1.08000 * 125.95641 * 179.86832 * 5 4 3 36 36 H 1.08996 * 109.68119 * 43.66615 * 8 7 3 37 37 H 1.08995 * 109.67663 * 283.10584 * 8 7 3 38 38 H 1.08998 * 109.46960 * 289.92601 * 9 8 7 39 39 H 1.09003 * 109.45289 * 169.94895 * 9 8 7 40 40 H 1.08995 * 109.46359 * 169.71286 * 10 9 8 41 41 H 1.09002 * 109.46761 * 49.73602 * 10 9 8 42 42 H 1.00891 * 110.99849 * 80.31822 * 13 11 6 43 43 H 1.09001 * 109.46689 * 66.79072 * 16 14 13 44 44 H 1.08998 * 109.47203 * 186.79230 * 16 14 13 45 45 H 1.08999 * 109.46783 * 306.79622 * 16 14 13 46 46 H 1.09004 * 109.46865 * 89.99640 * 20 19 17 47 47 H 1.08997 * 109.47443 * 209.99621 * 20 19 17 48 48 H 1.08998 * 109.47553 * 329.99773 * 20 19 17 49 49 H 1.09003 * 109.47330 * 210.00376 * 21 19 17 50 50 H 1.09003 * 109.47143 * 330.00229 * 21 19 17 51 51 H 0.97000 * 120.00399 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2883 2.1623 -1.1338 5 6 2.7084 3.3374 -0.7326 6 6 2.7100 3.3434 0.6603 7 6 2.2820 2.1274 1.0854 8 6 2.1469 1.7376 2.5362 9 6 2.9414 2.7401 3.3823 10 6 2.5561 4.1664 2.9809 11 6 3.1049 4.4707 1.5815 12 1 4.1913 4.5487 1.6216 13 7 2.5360 5.7331 1.0907 14 6 3.3166 6.8827 1.5672 15 1 3.6831 6.6809 2.5737 16 6 4.5030 7.1173 0.6299 17 6 2.4423 8.1099 1.5875 18 8 1.2828 8.0343 1.2399 19 7 2.9485 9.2913 1.9931 20 6 4.3488 9.3826 2.4136 21 6 2.0983 10.4842 2.0134 22 6 1.4247 10.5983 3.3567 23 1 1.6110 9.8562 4.1189 24 6 0.5700 11.6495 3.6122 25 7 -0.0174 11.7493 4.7847 26 14 0.2472 12.9327 2.2936 27 1 -0.9143 12.5134 1.4687 28 1 -0.0474 14.2389 2.9356 29 1 1.4467 13.0657 1.4283 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.9982 4.1590 -1.3707 36 1 2.5455 0.7341 2.6854 37 1 1.0967 1.7630 2.8268 38 1 4.0082 2.5913 3.2152 39 1 2.7140 2.5855 4.4370 40 1 2.9772 4.8716 3.6974 41 1 1.4702 4.2610 2.9738 42 1 1.5663 5.8198 1.3555 43 1 4.1374 7.4369 -0.3459 44 1 5.1484 7.8903 1.0472 45 1 5.0683 6.1917 0.5208 46 1 4.9724 9.6186 1.5512 47 1 4.4528 10.1674 3.1628 48 1 4.6632 8.4298 2.8394 49 1 2.7097 11.3693 1.8372 50 1 1.3414 10.4043 1.2331 51 1 -0.6185 12.4890 4.9646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076046982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:15 Heat of formation + Delta-G solvation = 45.357994 kcal Electronic energy + Delta-G solvation = -29686.271664 eV Core-core repulsion = 25815.336557 eV Total energy + Delta-G solvation = -3870.935107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.60234 -39.50506 -37.40285 -35.09660 -34.91516 -34.55131 -32.59712 -31.24496 -29.82731 -29.07249 -28.30409 -27.37778 -26.14164 -24.30614 -23.76380 -22.76759 -22.00014 -21.26086 -20.36530 -19.06598 -18.37434 -17.15365 -16.94038 -16.33138 -16.05387 -15.61341 -15.04508 -14.87118 -14.65986 -14.59218 -14.16227 -13.94659 -13.84953 -13.61739 -13.47105 -13.01601 -12.92139 -12.85317 -12.60157 -12.42189 -12.36948 -12.27707 -12.04221 -11.80396 -11.69277 -11.55040 -11.46758 -11.32595 -11.16316 -11.08252 -10.88984 -10.72537 -10.50735 -10.49325 -10.13686 -9.54274 -9.26247 -8.93416 -8.58789 -8.30306 -8.21174 -7.69136 -6.08946 -4.07673 1.81865 2.40041 2.85452 3.30066 3.35660 3.36058 3.38377 3.75826 4.23467 4.29829 4.40075 4.46866 4.61377 4.64860 4.70748 4.84971 4.95441 4.97050 5.01266 5.14452 5.21901 5.23996 5.25474 5.32014 5.36644 5.42933 5.45468 5.52534 5.59676 5.63830 5.70538 5.72798 5.79470 5.86026 5.90841 5.93712 6.07176 6.13969 6.15786 6.20819 6.37634 6.68946 6.73197 6.93864 6.98420 7.17403 7.35341 7.59859 7.61246 7.76582 8.25998 8.46682 8.92016 8.98436 9.51614 11.04422 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.002587 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.095560 B =10822.401126 C =11014.594724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.369 5.369 4 N -0.310 5.310 5 C 0.082 3.918 6 C -0.221 4.221 7 C 0.083 3.917 8 C -0.055 4.055 9 C -0.107 4.107 10 C -0.154 4.154 11 C 0.169 3.831 12 H 0.083 0.917 13 N -0.663 5.663 14 C 0.068 3.932 15 H 0.065 0.935 16 C -0.144 4.144 17 C 0.507 3.493 18 O -0.534 6.534 19 N -0.595 5.595 20 C 0.082 3.918 21 C 0.215 3.785 22 C -0.528 4.528 23 H 0.073 0.927 24 C 0.072 3.928 25 N -0.898 5.898 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.266 1.266 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.183 0.817 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.358 0.642 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.030 0.970 50 H 0.037 0.963 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -22.763 -5.329 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 N -0.151 5.151 4 N -0.131 5.131 5 C -0.103 4.103 6 C -0.233 4.233 7 C -0.046 4.046 8 C -0.094 4.094 9 C -0.145 4.145 10 C -0.193 4.193 11 C 0.058 3.942 12 H 0.101 0.899 13 N -0.297 5.297 14 C -0.046 4.046 15 H 0.082 0.918 16 C -0.202 4.202 17 C 0.293 3.707 18 O -0.410 6.410 19 N -0.327 5.327 20 C -0.062 4.062 21 C 0.095 3.905 22 C -0.566 4.566 23 H 0.091 0.909 24 C -0.130 4.130 25 N -0.537 5.537 26 Si 0.704 3.296 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.190 1.190 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.200 0.800 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.181 0.819 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.048 0.952 50 H 0.055 0.945 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.420 -23.556 -7.053 26.332 hybrid contribution -0.425 1.285 1.126 1.761 sum 8.995 -22.271 -5.927 24.739 Atomic orbital electron populations 1.22183 0.94367 1.02862 1.03433 1.21585 0.95208 0.78365 1.03971 1.48353 1.51482 1.11709 1.03529 1.77541 1.23604 1.04577 1.07378 1.23542 0.97311 0.94846 0.94630 1.19706 1.14478 0.95123 0.93968 1.20856 1.00709 0.92554 0.90480 1.20337 1.01722 0.99596 0.87717 1.21463 1.00072 0.94016 0.98983 1.22416 1.02067 0.96731 0.98079 1.19872 0.98309 0.86785 0.89283 0.89948 1.60421 1.07472 0.99097 1.62707 1.21423 0.94643 0.90308 0.98194 0.91754 1.21968 0.96202 1.02014 1.00002 1.20323 0.87914 0.84494 0.77953 1.90662 1.17582 1.84567 1.48225 1.47755 1.11326 1.09827 1.63802 1.21825 0.82478 1.02399 0.99530 1.19668 0.90381 0.81936 0.98539 1.21314 1.26506 1.10845 0.97960 0.90880 1.24860 0.95094 0.97698 0.95391 1.69896 1.30105 1.31788 1.21901 0.86839 0.79506 0.81093 0.82194 1.19888 1.21097 1.19029 0.91523 0.90663 0.92001 0.88944 0.89340 0.79960 0.90615 0.89942 0.91337 0.90944 0.91304 0.91225 0.81862 0.91782 0.91200 0.92046 0.93240 0.90722 0.92016 0.95215 0.94526 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.13 0.96 7.01 -4.04 -0.03 0.94 16 3 N -0.37 -4.17 3.60 -57.13 -0.21 -4.37 16 4 N -0.31 -4.27 12.59 30.54 0.38 -3.89 16 5 C 0.08 1.09 11.84 -17.48 -0.21 0.88 16 6 C -0.22 -2.74 5.60 -105.05 -0.59 -3.33 16 7 C 0.08 0.92 6.73 -82.33 -0.55 0.36 16 8 C -0.05 -0.44 5.90 -27.63 -0.16 -0.60 16 9 C -0.11 -0.87 5.90 -26.49 -0.16 -1.02 16 10 C -0.15 -1.64 5.19 -26.49 -0.14 -1.78 16 11 C 0.17 1.98 2.59 -68.60 -0.18 1.80 16 12 H 0.08 0.90 7.08 -51.93 -0.37 0.53 16 13 N -0.66 -9.58 5.81 -101.89 -0.59 -10.17 16 14 C 0.07 0.99 2.05 -68.86 -0.14 0.85 16 15 H 0.06 0.87 6.53 -51.93 -0.34 0.53 16 16 C -0.14 -1.73 8.98 37.16 0.33 -1.39 16 17 C 0.51 10.22 7.10 -10.99 -0.08 10.14 16 18 O -0.53 -13.08 15.23 5.56 0.08 -13.00 16 19 N -0.60 -12.10 2.86 -182.96 -0.52 -12.63 16 20 C 0.08 1.22 8.79 59.84 0.53 1.74 16 21 C 0.22 5.28 4.23 -5.19 -0.02 5.25 16 22 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 23 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 24 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 25 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 26 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 27 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.45 7.57 -51.93 -0.39 0.05 16 35 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.08 0.46 7.76 -51.93 -0.40 0.05 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.74 7.64 -51.93 -0.40 0.35 16 41 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 42 H 0.36 6.09 7.08 -39.30 -0.28 5.81 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.74 4.74 -51.93 -0.25 0.50 16 45 H 0.06 0.63 7.33 -51.93 -0.38 0.25 16 46 H 0.05 0.61 7.10 -51.93 -0.37 0.24 16 47 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 48 H 0.06 0.76 5.93 -51.93 -0.31 0.46 16 49 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 50 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 51 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -35.52 398.09 -8.63 -44.15 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.43 Total: 4.26 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.45 Total: -0.42 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.16 Total: -58.00 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.52 -8.63 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076046982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.507 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds