Wall clock time and date at job start Tue Mar 31 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46963 * 2 1 4 4 N 1.40298 * 126.08926 * 90.02515 * 3 2 1 5 5 C 1.31071 * 108.26686 * 180.02562 * 4 3 2 6 6 C 1.39294 * 108.08090 * 359.97438 * 5 4 3 7 7 C 1.34320 * 126.09243 * 269.99837 * 3 2 1 8 8 C 1.50830 * 128.03396 * 359.78908 * 7 3 2 9 9 C 1.53364 * 108.38175 * 196.66249 * 8 7 3 10 10 C 1.53105 * 109.50543 * 310.05839 * 9 8 7 11 11 C 1.50847 * 127.90357 * 179.97438 * 6 5 4 12 12 H 1.09000 * 109.71009 * 76.78984 * 11 6 5 13 13 N 1.46899 * 109.68070 * 316.25112 * 11 6 5 14 14 C 1.46899 * 111.00164 * 155.28568 * 13 11 6 15 15 H 1.09003 * 109.46906 * 36.70442 * 14 13 11 16 16 C 1.53003 * 109.47227 * 276.70974 * 14 13 11 17 17 C 1.50696 * 109.47180 * 156.70596 * 14 13 11 18 18 O 1.21277 * 119.99981 * 6.93280 * 17 14 13 19 19 N 1.34777 * 120.00126 * 186.93384 * 17 14 13 20 20 C 1.46504 * 119.99727 * 6.26036 * 19 17 14 21 21 C 1.46494 * 120.00356 * 186.26014 * 19 17 14 22 22 C 1.50700 * 109.46909 * 89.99944 * 21 19 17 23 23 H 1.08001 * 120.00587 * 0.02562 * 22 21 19 24 24 C 1.37882 * 119.99962 * 180.02562 * 22 21 19 25 25 N 1.31520 * 120.00036 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 359.97438 * 24 22 21 27 27 H 1.48508 * 109.47018 * 90.00149 * 26 24 22 28 28 H 1.48498 * 109.47432 * 210.00116 * 26 24 22 29 29 H 1.48503 * 109.47063 * 330.00540 * 26 24 22 30 30 H 1.08994 * 109.47052 * 300.00188 * 1 2 3 31 31 H 1.09007 * 109.46766 * 60.00222 * 1 2 3 32 32 H 1.08999 * 109.46533 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47326 * 240.00174 * 2 1 3 34 34 H 1.08996 * 109.47067 * 120.00164 * 2 1 3 35 35 H 1.08004 * 125.96203 * 179.97438 * 5 4 3 36 36 H 1.09011 * 109.67928 * 76.94121 * 8 7 3 37 37 H 1.08996 * 109.68475 * 316.38617 * 8 7 3 38 38 H 1.09006 * 109.46491 * 190.05312 * 9 8 7 39 39 H 1.08995 * 109.46608 * 70.07600 * 9 8 7 40 40 H 1.09005 * 109.46577 * 190.29685 * 10 9 8 41 41 H 1.09005 * 109.46935 * 310.28028 * 10 9 8 42 42 H 1.00895 * 111.00498 * 279.24445 * 13 11 6 43 43 H 1.08996 * 109.47008 * 66.35231 * 16 14 13 44 44 H 1.09005 * 109.47019 * 186.35182 * 16 14 13 45 45 H 1.08996 * 109.46885 * 306.35155 * 16 14 13 46 46 H 1.09003 * 109.46754 * 84.58087 * 20 19 17 47 47 H 1.09000 * 109.46995 * 204.57297 * 20 19 17 48 48 H 1.08999 * 109.47346 * 324.58033 * 20 19 17 49 49 H 1.08997 * 109.47654 * 209.99851 * 21 19 17 50 50 H 1.08998 * 109.47007 * 330.00279 * 21 19 17 51 51 H 0.96998 * 119.99873 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2943 2.1602 1.1338 5 6 2.7095 3.3369 0.7326 6 6 2.7112 3.3430 -0.6603 7 6 2.2821 2.1272 -1.0854 8 6 2.1488 1.7368 -2.5362 9 6 2.9439 2.7392 -3.3818 10 6 2.5576 4.1656 -2.9814 11 6 3.1080 4.4696 -1.5817 12 1 4.1946 4.5471 -1.6208 13 7 2.5392 5.7325 -1.0924 14 6 3.3271 6.8808 -1.5597 15 1 3.6821 6.6898 -2.5725 16 6 4.5245 7.0898 -0.6305 17 6 2.4652 8.1170 -1.5543 18 8 1.3499 8.0765 -1.0797 19 7 2.9338 9.2675 -2.0769 20 6 4.2233 9.2846 -2.7721 21 6 2.1539 10.5010 -1.9498 22 6 2.5436 11.2132 -0.6802 23 1 3.2972 10.7896 -0.0328 24 6 1.9380 12.4057 -0.3449 25 7 2.2784 13.0274 0.7629 26 14 0.6350 13.1388 -1.4647 27 1 -0.7028 12.6331 -1.0649 28 1 0.6594 14.6191 -1.3497 29 1 0.9126 12.7468 -2.8700 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.9997 4.1585 1.3707 36 1 1.0988 1.7617 -2.8280 37 1 2.5478 0.7334 -2.6845 38 1 2.7178 2.5842 -4.4368 39 1 4.0105 2.5908 -3.2135 40 1 2.9791 4.8707 -3.6979 41 1 1.4717 4.2597 -2.9751 42 1 1.5718 5.8229 -1.3646 43 1 5.2058 6.2437 -0.7200 44 1 5.0448 8.0063 -0.9089 45 1 4.1759 7.1683 0.3992 46 1 4.0802 8.9855 -3.8105 47 1 4.6411 10.2908 -2.7381 48 1 4.9079 8.5902 -2.2850 49 1 2.3537 11.1470 -2.8047 50 1 1.0918 10.2578 -1.9186 51 1 1.8521 13.8661 0.9990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076046985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:18 Heat of formation + Delta-G solvation = 47.701409 kcal Electronic energy + Delta-G solvation = -29658.208079 eV Core-core repulsion = 25787.374590 eV Total energy + Delta-G solvation = -3870.833489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60844 -39.48492 -37.43959 -35.11475 -34.89521 -34.55034 -32.55835 -31.24775 -29.83573 -29.07667 -28.32707 -27.44250 -26.08194 -24.31218 -23.75289 -22.78193 -22.03996 -21.26954 -20.36985 -19.07340 -18.35180 -17.16553 -16.91576 -16.31843 -16.08015 -15.64435 -14.97363 -14.88382 -14.68166 -14.50816 -14.20422 -14.02443 -13.96446 -13.79262 -13.48497 -12.99601 -12.94731 -12.78433 -12.58374 -12.40978 -12.34339 -12.21498 -12.07771 -11.79031 -11.69361 -11.54652 -11.47627 -11.33901 -11.21942 -11.14373 -10.82937 -10.69183 -10.50150 -10.49133 -10.12361 -9.51484 -9.26003 -8.91684 -8.56818 -8.30598 -8.21733 -7.67214 -6.06598 -4.05326 1.81401 2.39993 2.86343 3.30642 3.32680 3.36704 3.38619 3.78691 4.21091 4.27087 4.41330 4.42663 4.55157 4.62005 4.67403 4.83469 4.90058 4.96727 5.01183 5.10695 5.18739 5.21789 5.26544 5.30714 5.32976 5.43188 5.44277 5.47551 5.57024 5.59944 5.67934 5.70530 5.81247 5.84311 5.94356 5.96328 6.06090 6.07267 6.18737 6.20336 6.56826 6.69068 6.74730 6.95164 6.98235 7.17157 7.36838 7.57489 7.63001 7.77443 8.26719 8.49152 8.94244 9.00078 9.53706 11.06733 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.002551 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.300067 B =10973.874997 C =11351.570290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.369 5.369 4 N -0.309 5.309 5 C 0.083 3.917 6 C -0.221 4.221 7 C 0.081 3.919 8 C -0.054 4.054 9 C -0.107 4.107 10 C -0.152 4.152 11 C 0.168 3.832 12 H 0.084 0.916 13 N -0.660 5.660 14 C 0.071 3.929 15 H 0.060 0.940 16 C -0.142 4.142 17 C 0.508 3.492 18 O -0.533 6.533 19 N -0.596 5.596 20 C 0.071 3.929 21 C 0.215 3.785 22 C -0.528 4.528 23 H 0.075 0.925 24 C 0.072 3.928 25 N -0.897 5.897 26 Si 0.876 3.124 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.266 1.266 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.185 0.815 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.355 0.645 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.029 0.971 50 H 0.037 0.963 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 -26.485 -10.388 28.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 N -0.151 5.151 4 N -0.130 5.130 5 C -0.102 4.102 6 C -0.233 4.233 7 C -0.048 4.048 8 C -0.093 4.093 9 C -0.146 4.146 10 C -0.192 4.192 11 C 0.057 3.943 12 H 0.102 0.898 13 N -0.294 5.294 14 C -0.043 4.043 15 H 0.077 0.923 16 C -0.200 4.200 17 C 0.294 3.706 18 O -0.410 6.410 19 N -0.328 5.328 20 C -0.073 4.073 21 C 0.094 3.906 22 C -0.567 4.567 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.535 5.535 26 Si 0.703 3.297 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.191 1.191 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.202 0.798 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.177 0.823 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.047 0.953 50 H 0.055 0.945 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.073 -27.213 -8.382 28.640 hybrid contribution -0.757 1.122 -1.982 2.400 sum 2.316 -26.092 -10.364 28.170 Atomic orbital electron populations 1.22181 0.94392 1.02837 1.03399 1.21579 0.95178 0.78405 1.03973 1.48358 1.51431 1.11768 1.03550 1.77566 1.23542 1.04591 1.07254 1.23594 0.97099 0.94798 0.94668 1.19711 1.14456 0.95096 0.94018 1.20827 1.00960 0.92615 0.90435 1.20320 1.01579 0.99586 0.87806 1.21464 1.00212 0.94032 0.98853 1.22434 1.01814 0.96724 0.98190 1.19907 0.98408 0.86836 0.89120 0.89827 1.60340 1.06871 0.99106 1.63079 1.21431 0.94756 0.90074 0.98006 0.92270 1.21913 0.95659 1.01574 1.00852 1.20314 0.87286 0.84536 0.78460 1.90657 1.20327 1.84507 1.45513 1.47762 1.20762 1.09468 1.54853 1.21948 0.86002 1.03839 0.95491 1.19671 0.92379 0.81015 0.97501 1.21337 1.23749 1.05819 1.05790 0.90667 1.24861 0.96449 0.96666 0.95054 1.69900 1.42880 1.17207 1.23558 0.86851 0.82903 0.78378 0.81542 1.19917 1.21105 1.19126 0.91477 0.92089 0.90676 0.89397 0.88909 0.79805 0.90054 0.90619 0.91065 0.91265 0.91481 0.91374 0.82310 0.92312 0.90973 0.90979 0.93899 0.90447 0.91073 0.95326 0.94517 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.13 0.95 7.01 -4.04 -0.03 0.92 16 3 N -0.37 -4.15 3.60 -57.13 -0.21 -4.35 16 4 N -0.31 -4.35 12.59 30.54 0.38 -3.96 16 5 C 0.08 1.15 11.84 -17.48 -0.21 0.94 16 6 C -0.22 -2.73 5.60 -105.05 -0.59 -3.31 16 7 C 0.08 0.86 6.73 -82.33 -0.55 0.31 16 8 C -0.05 -0.39 5.90 -27.63 -0.16 -0.56 16 9 C -0.11 -0.75 5.90 -26.49 -0.16 -0.91 16 10 C -0.15 -1.41 5.19 -26.44 -0.14 -1.55 16 11 C 0.17 1.91 2.62 -68.56 -0.18 1.73 16 12 H 0.08 0.90 7.07 -51.93 -0.37 0.53 16 13 N -0.66 -9.48 5.76 -101.85 -0.59 -10.06 16 14 C 0.07 1.04 2.05 -68.87 -0.14 0.90 16 15 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 16 C -0.14 -1.97 8.95 37.16 0.33 -1.63 16 17 C 0.51 10.24 6.95 -10.99 -0.08 10.17 16 18 O -0.53 -13.05 15.33 5.56 0.09 -12.96 16 19 N -0.60 -12.15 2.86 -182.96 -0.52 -12.67 16 20 C 0.07 1.06 9.80 59.85 0.59 1.65 16 21 C 0.21 5.28 4.25 -5.20 -0.02 5.26 16 22 C -0.53 -15.21 9.94 -34.44 -0.34 -15.56 16 23 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 24 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 25 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 26 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 27 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.42 7.57 -51.93 -0.39 0.03 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16 36 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.08 0.41 7.76 -51.93 -0.40 0.01 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 40 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 41 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 42 H 0.35 5.70 7.23 -39.29 -0.28 5.42 16 43 H 0.06 0.65 7.41 -51.93 -0.38 0.27 16 44 H 0.07 0.99 5.36 -51.93 -0.28 0.72 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 48 H 0.07 0.90 4.29 -51.93 -0.22 0.68 16 49 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 50 H 0.04 0.97 6.77 -51.93 -0.35 0.62 16 51 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -35.83 399.54 -8.57 -44.40 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.46 Total: 3.96 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.39 Total: -0.39 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.16 Total: -58.10 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.83 -8.57 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076046985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.103 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds