Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46917 * 2 1 4 4 N 1.40295 * 126.09409 * 269.99899 * 3 2 1 5 5 C 1.31068 * 108.27146 * 179.97438 * 4 3 2 6 6 C 1.39247 * 108.09410 * 0.03183 * 5 4 3 7 7 C 1.34327 * 126.08722 * 90.00892 * 3 2 1 8 8 C 1.50816 * 128.03616 * 0.10812 * 7 3 2 9 9 C 1.53366 * 108.38300 * 163.40677 * 8 7 3 10 10 C 1.53103 * 109.51141 * 49.94077 * 9 8 7 11 11 C 1.50834 * 127.94166 * 180.12702 * 6 5 4 12 12 H 1.09005 * 109.68584 * 283.08512 * 11 6 5 13 13 N 1.46904 * 109.68333 * 43.59659 * 11 6 5 14 14 C 1.46893 * 111.00193 * 274.48410 * 13 11 6 15 15 H 1.08995 * 109.47316 * 34.99696 * 14 13 11 16 16 C 1.53008 * 109.47030 * 274.99680 * 14 13 11 17 17 C 1.50703 * 109.47316 * 154.99793 * 14 13 11 18 18 O 1.21281 * 119.99694 * 5.93898 * 17 14 13 19 19 N 1.34775 * 119.99770 * 185.93413 * 17 14 13 20 20 C 1.46498 * 120.00394 * 4.61149 * 19 17 14 21 21 C 1.46505 * 119.99621 * 184.61714 * 19 17 14 22 22 C 1.50693 * 109.47639 * 89.99883 * 21 19 17 23 23 H 1.08006 * 119.99900 * 359.97438 * 22 21 19 24 24 C 1.37878 * 120.00271 * 180.02562 * 22 21 19 25 25 N 1.31504 * 119.99903 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99778 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47201 * 89.99914 * 26 24 22 28 28 H 1.48503 * 109.46937 * 209.99910 * 26 24 22 29 29 H 1.48496 * 109.47318 * 329.99649 * 26 24 22 30 30 H 1.08997 * 109.47032 * 299.99788 * 1 2 3 31 31 H 1.09001 * 109.46877 * 59.99453 * 1 2 3 32 32 H 1.08994 * 109.46901 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46890 * 240.00842 * 2 1 3 34 34 H 1.08999 * 109.47593 * 120.00408 * 2 1 3 35 35 H 1.07996 * 125.96145 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.68604 * 43.68661 * 8 7 3 37 37 H 1.08996 * 109.68690 * 283.12696 * 8 7 3 38 38 H 1.09004 * 109.46309 * 289.93100 * 9 8 7 39 39 H 1.09004 * 109.46170 * 169.95543 * 9 8 7 40 40 H 1.09004 * 109.46816 * 169.72110 * 10 9 8 41 41 H 1.09009 * 109.46443 * 49.75139 * 10 9 8 42 42 H 1.00903 * 110.99363 * 38.43401 * 13 11 6 43 43 H 1.08990 * 109.47172 * 189.17742 * 16 14 13 44 44 H 1.09001 * 109.46638 * 309.18186 * 16 14 13 45 45 H 1.08999 * 109.46792 * 69.17271 * 16 14 13 46 46 H 1.09003 * 109.47035 * 95.84372 * 20 19 17 47 47 H 1.08997 * 109.47489 * 215.84241 * 20 19 17 48 48 H 1.08996 * 109.46999 * 335.84493 * 20 19 17 49 49 H 1.09003 * 109.46559 * 210.00271 * 21 19 17 50 50 H 1.09003 * 109.46821 * 329.99769 * 21 19 17 51 51 H 0.97005 * 120.00546 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2938 2.1605 -1.1337 5 6 2.7092 3.3371 -0.7325 6 6 2.7117 3.3432 0.6600 7 6 2.2822 2.1272 1.0855 8 6 2.1470 1.7374 2.5362 9 6 2.9414 2.7398 3.3824 10 6 2.5561 4.1662 2.9812 11 6 3.1067 4.4699 1.5817 12 1 4.1933 4.5476 1.6220 13 7 2.5384 5.7327 1.0915 14 6 3.4149 6.3495 0.0869 15 1 3.8906 5.5700 -0.5080 16 6 4.4892 7.1820 0.7896 17 6 2.5981 7.2403 -0.8134 18 8 1.4258 7.4356 -0.5715 19 7 3.1704 7.8200 -1.8871 20 6 4.5577 7.5052 -2.2370 21 6 2.4052 8.7650 -2.7042 22 6 2.5922 10.1603 -2.1665 23 1 3.2182 10.3265 -1.3022 24 6 1.9634 11.2246 -2.7772 25 7 1.2008 11.0221 -3.8292 26 14 2.1959 12.9541 -2.1110 27 1 3.3656 13.5863 -2.7724 28 1 0.9778 13.7581 -2.3853 29 1 2.4290 12.8931 -0.6457 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.9991 4.1588 -1.3706 36 1 2.5456 0.7339 2.6854 37 1 1.0968 1.7627 2.8268 38 1 4.0082 2.5911 3.2153 39 1 2.7140 2.5852 4.4372 40 1 2.9772 4.8715 3.6977 41 1 1.4701 4.2608 2.9741 42 1 1.6094 5.5923 0.7235 43 1 5.0363 7.7675 0.0508 44 1 4.0172 7.8526 1.5077 45 1 5.1793 6.5188 1.3112 46 1 4.5725 6.7213 -2.9942 47 1 5.0451 8.3979 -2.6289 48 1 5.0877 7.1622 -1.3485 49 1 2.7576 8.7225 -3.7348 50 1 1.3480 8.5014 -2.6705 51 1 0.7587 11.7709 -4.2592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076046987.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = 44.287276 kcal Electronic energy + Delta-G solvation = -30025.016115 eV Core-core repulsion = 26154.034578 eV Total energy + Delta-G solvation = -3870.981537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.73656 -39.34414 -37.28485 -35.26496 -34.81327 -34.45152 -32.61577 -31.17158 -29.87608 -29.01079 -27.90589 -27.32172 -25.93388 -24.13206 -24.02656 -22.95717 -21.91144 -21.33085 -20.59563 -19.00559 -18.32576 -17.14175 -16.47598 -16.32910 -15.98430 -15.66296 -15.00512 -14.92079 -14.58530 -14.53443 -14.23798 -14.01670 -13.91079 -13.69054 -13.44331 -13.06967 -12.99670 -12.74831 -12.51377 -12.42105 -12.31524 -12.01671 -11.96862 -11.70074 -11.60821 -11.45711 -11.22591 -11.15137 -11.05548 -10.97808 -10.80288 -10.65102 -10.56159 -10.51198 -10.11298 -9.57590 -9.37620 -8.76457 -8.65945 -8.39720 -8.04984 -7.58364 -6.00245 -4.04910 1.74287 2.32336 2.70456 3.33076 3.39301 3.41883 3.48299 3.90380 4.22317 4.27072 4.36249 4.49077 4.59937 4.62928 4.76627 4.83016 4.88106 4.96992 5.07539 5.11673 5.19264 5.24451 5.33983 5.35141 5.39423 5.44020 5.49693 5.54564 5.56258 5.64482 5.67597 5.70829 5.85762 5.94531 5.98244 6.00201 6.13476 6.14316 6.21206 6.26128 6.54765 6.57241 6.92181 7.02724 7.25120 7.49567 7.57995 7.61714 7.66658 7.96492 8.27869 8.46966 8.94313 9.13357 9.60095 11.07845 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.002801 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.347258 B = 9994.663539 C =10656.869318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.366 5.366 4 N -0.297 5.297 5 C 0.059 3.941 6 C -0.269 4.269 7 C 0.092 3.908 8 C -0.055 4.055 9 C -0.111 4.111 10 C -0.106 4.106 11 C 0.167 3.833 12 H 0.081 0.919 13 N -0.659 5.659 14 C 0.065 3.935 15 H 0.062 0.938 16 C -0.143 4.143 17 C 0.504 3.496 18 O -0.534 6.534 19 N -0.600 5.600 20 C 0.068 3.932 21 C 0.245 3.755 22 C -0.525 4.525 23 H 0.058 0.942 24 C 0.060 3.940 25 N -0.895 5.895 26 Si 0.898 3.102 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.176 0.824 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.357 0.643 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.031 0.969 50 H 0.044 0.956 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -23.553 12.898 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 N -0.148 5.148 4 N -0.117 5.117 5 C -0.127 4.127 6 C -0.282 4.282 7 C -0.037 4.037 8 C -0.094 4.094 9 C -0.150 4.150 10 C -0.145 4.145 11 C 0.056 3.944 12 H 0.099 0.901 13 N -0.292 5.292 14 C -0.048 4.048 15 H 0.079 0.921 16 C -0.200 4.200 17 C 0.289 3.711 18 O -0.411 6.411 19 N -0.332 5.332 20 C -0.076 4.076 21 C 0.126 3.874 22 C -0.564 4.564 23 H 0.076 0.924 24 C -0.142 4.142 25 N -0.534 5.534 26 Si 0.725 3.275 27 H -0.207 1.207 28 H -0.211 1.211 29 H -0.198 1.198 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.193 0.807 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.179 0.821 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.049 0.951 50 H 0.062 0.938 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.467 -23.834 12.333 27.387 hybrid contribution 0.133 0.920 -0.114 0.937 sum 5.600 -22.914 12.220 26.566 Atomic orbital electron populations 1.22182 0.94225 1.02969 1.03478 1.21632 0.95319 0.78211 1.04123 1.48459 1.50963 1.11800 1.03538 1.77558 1.22599 1.04228 1.07354 1.23579 0.98939 0.95581 0.94554 1.20843 1.15441 0.97638 0.94301 1.20936 1.00045 0.92153 0.90610 1.20359 1.01805 0.99719 0.87508 1.21552 1.00091 0.94463 0.98883 1.21563 1.01842 0.95234 0.95815 1.20058 0.98416 0.84150 0.91779 0.90073 1.60564 1.06186 1.23393 1.39102 1.21522 0.94464 0.96337 0.92480 0.92079 1.21933 0.97036 0.99903 1.01169 1.20309 0.87850 0.81447 0.81485 1.90657 1.16540 1.62279 1.71599 1.48080 1.12942 1.44062 1.28123 1.21954 0.83985 1.01206 1.00415 1.19277 0.92485 0.86284 0.89352 1.21438 1.29518 0.91582 1.13843 0.92405 1.24938 0.94936 0.99303 0.94973 1.69934 1.31050 1.31652 1.20795 0.86499 0.77515 0.84032 0.79404 1.20682 1.21130 1.19828 0.91992 0.91454 0.90543 0.88815 0.89197 0.80684 0.90625 0.89856 0.91416 0.90788 0.90682 0.91369 0.82068 0.90968 0.91115 0.92449 0.93799 0.90934 0.91052 0.95099 0.93810 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.13 0.97 7.01 -4.04 -0.03 0.94 16 3 N -0.37 -4.23 3.60 -57.12 -0.21 -4.43 16 4 N -0.30 -4.36 12.59 30.53 0.38 -3.97 16 5 C 0.06 0.84 11.08 -17.50 -0.19 0.65 16 6 C -0.27 -3.40 5.33 -105.05 -0.56 -3.96 16 7 C 0.09 1.01 6.73 -82.31 -0.55 0.45 16 8 C -0.06 -0.40 5.90 -27.64 -0.16 -0.57 16 9 C -0.11 -0.79 5.90 -26.49 -0.16 -0.94 16 10 C -0.11 -1.02 5.52 -26.46 -0.15 -1.17 16 11 C 0.17 1.96 2.65 -68.58 -0.18 1.78 16 12 H 0.08 0.91 7.23 -51.93 -0.38 0.53 16 13 N -0.66 -9.84 5.85 -101.87 -0.60 -10.43 16 14 C 0.07 1.01 1.64 -68.86 -0.11 0.90 16 15 H 0.06 0.84 5.31 -51.93 -0.28 0.57 16 16 C -0.14 -1.97 8.83 37.16 0.33 -1.65 16 17 C 0.50 10.60 6.98 -10.98 -0.08 10.53 16 18 O -0.53 -13.63 15.28 5.56 0.08 -13.55 16 19 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 20 C 0.07 1.10 9.74 59.85 0.58 1.68 16 21 C 0.25 6.55 5.22 -5.19 -0.03 6.52 16 22 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 23 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 25 N -0.90 -27.05 13.28 55.43 0.74 -26.32 16 26 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.44 7.57 -51.93 -0.39 0.05 16 35 H 0.18 2.50 6.41 -52.49 -0.34 2.17 16 36 H 0.08 0.41 7.76 -51.93 -0.40 0.01 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.73 8.11 -51.92 -0.42 0.31 16 42 H 0.36 6.18 7.28 -39.29 -0.29 5.89 16 43 H 0.07 0.99 5.41 -51.93 -0.28 0.71 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.63 7.58 -51.93 -0.39 0.24 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.20 8.11 -51.93 -0.42 0.77 16 48 H 0.07 0.94 4.11 -51.93 -0.21 0.72 16 49 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 50 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 51 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -35.31 399.77 -8.82 -44.12 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.37 Total: 4.20 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.33 Total: 0.60 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.20 Total: -58.55 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.31 -8.82 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076046987.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.410 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds