Wall clock time and date at job start Tue Mar 31 2020 04:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46850 * 2 1 4 4 N 1.46501 * 109.47140 * 119.99871 * 2 1 3 5 5 C 1.36760 * 127.14250 * 300.03032 * 4 2 1 6 6 N 1.30300 * 107.31784 * 179.97438 * 5 4 2 7 7 N 1.28526 * 110.07432 * 359.97438 * 6 5 4 8 8 C 1.31285 * 109.86134 * 359.75634 * 7 6 5 9 9 S 1.76199 * 126.48693 * 180.26293 * 8 7 6 10 10 C 1.81007 * 99.99790 * 0.13976 * 9 8 7 11 11 C 1.52999 * 109.46840 * 179.97438 * 10 9 8 12 12 O 1.42907 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.35671 * 117.00370 * 180.02562 * 12 11 10 14 14 C 1.39315 * 119.81394 * 359.71999 * 13 12 11 15 15 C 1.36445 * 120.18299 * 179.76234 * 14 13 12 16 16 C 1.40833 * 119.80744 * 0.51428 * 15 14 13 17 17 C 1.41216 * 120.17825 * 179.71787 * 16 15 14 18 18 H 1.07995 * 120.00276 * 204.56216 * 17 16 15 19 19 C 1.39899 * 119.99764 * 24.56627 * 17 16 15 20 20 N 1.30876 * 119.99622 * 17.92486 * 19 17 16 21 21 Si 1.86797 * 119.99870 * 197.92424 * 19 17 16 22 22 H 1.48496 * 109.47234 * 90.00123 * 21 19 17 23 23 H 1.48497 * 109.47029 * 209.99935 * 21 19 17 24 24 H 1.48501 * 109.47137 * 329.99701 * 21 19 17 25 25 C 1.40836 * 119.64467 * 359.74059 * 16 15 14 26 26 C 1.36438 * 119.81009 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46810 * 299.99821 * 1 2 3 28 28 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47072 * 59.99778 * 1 2 3 30 30 H 1.08999 * 109.46810 * 240.00178 * 2 1 3 31 31 H 1.08998 * 109.47416 * 300.00291 * 3 2 1 32 32 H 1.08999 * 109.47268 * 60.00459 * 3 2 1 33 33 H 1.09005 * 109.47020 * 179.97438 * 3 2 1 34 34 H 1.08001 * 126.34239 * 359.97438 * 5 4 2 35 35 H 1.08992 * 109.47457 * 299.99803 * 10 9 8 36 36 H 1.09007 * 109.46746 * 60.00168 * 10 9 8 37 37 H 1.09003 * 109.47457 * 299.99920 * 11 10 9 38 38 H 1.08998 * 109.47085 * 60.00051 * 11 10 9 39 39 H 1.07998 * 119.91146 * 0.02562 * 14 13 12 40 40 H 1.07996 * 120.09205 * 180.25150 * 15 14 13 41 41 H 0.97003 * 119.99530 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.09517 * 179.97438 * 25 16 15 43 43 H 1.07995 * 119.90624 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7793 -0.3534 2.4998 6 7 2.3959 -1.2260 3.2455 7 7 3.0035 -2.0856 2.5081 8 6 2.8012 -1.8083 1.2409 9 16 3.4253 -2.7063 -0.1407 10 6 4.3417 -4.0090 0.7192 11 6 4.9894 -4.9399 -0.3079 12 8 5.7124 -5.9688 0.3710 13 6 6.3511 -6.8843 -0.4001 14 6 6.2759 -6.7940 -1.7883 15 6 6.9193 -7.7078 -2.5711 16 6 7.6518 -8.7507 -1.9718 17 6 8.3158 -9.7042 -2.7744 18 1 8.5305 -10.6864 -2.3801 19 6 8.6955 -9.3764 -4.0803 20 7 8.7642 -8.1217 -4.4464 21 14 9.1045 -10.7295 -5.3015 22 1 7.8722 -11.1315 -6.0259 23 1 10.1100 -10.2311 -6.2740 24 1 9.6566 -11.9013 -4.5754 25 6 7.7183 -8.8378 -0.5677 26 6 7.0732 -7.9131 0.2006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4426 0.0005 34 1 1.1887 0.4816 2.8469 35 1 5.1155 -3.5591 1.3412 36 1 3.6578 -4.5807 1.3467 37 1 4.2154 -5.3899 -0.9295 38 1 5.6731 -4.3685 -0.9357 39 1 5.7104 -5.9960 -2.2462 40 1 6.8634 -7.6340 -3.6471 41 1 9.0271 -7.8945 -5.3520 42 1 8.2777 -9.6348 -0.1004 43 1 7.1228 -7.9787 1.2774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078986356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:13 Heat of formation + Delta-G solvation = 53.351668 kcal Electronic energy + Delta-G solvation = -24359.189567 eV Core-core repulsion = 20725.113684 eV Total energy + Delta-G solvation = -3634.075883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.16230 -38.85496 -37.11341 -36.50459 -33.46720 -31.95627 -31.68992 -30.83515 -29.64990 -28.91629 -27.99870 -24.98379 -24.46610 -23.43320 -22.83516 -21.34762 -20.98456 -20.25393 -18.25497 -17.41440 -17.18756 -16.47728 -16.39648 -15.74644 -15.71099 -15.40711 -14.94802 -14.65897 -14.00967 -13.97014 -13.80748 -13.41190 -13.27333 -13.02944 -12.99803 -12.47338 -12.36301 -12.18723 -12.08017 -11.88629 -11.62050 -11.45481 -11.32632 -11.13920 -11.05257 -10.98224 -10.65225 -10.59035 -10.48886 -10.27920 -9.93732 -9.79692 -9.38400 -9.03329 -7.95094 -7.66736 -7.04034 -6.74256 -4.26620 0.71383 1.35006 1.75495 2.20519 2.57488 2.75273 2.95742 3.07918 3.11456 3.20425 3.85341 3.94316 4.14738 4.18344 4.19980 4.35203 4.59990 4.81776 4.82712 4.83745 4.90296 4.98911 5.01192 5.08551 5.27632 5.41922 5.45596 5.46954 5.63959 5.69467 5.75355 5.84937 6.09578 6.27122 6.39983 6.69147 6.88147 7.05581 7.26620 7.38830 7.54563 7.88730 7.99080 8.13547 8.36055 8.40986 8.62942 8.88960 8.97390 10.20556 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.001926 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.953769 B =14533.213493 C =15405.542054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 C -0.163 4.163 4 N -0.461 5.461 5 C 0.159 3.841 6 N -0.287 5.287 7 N -0.289 5.289 8 C 0.161 3.839 9 S 0.012 5.988 10 C -0.102 4.102 11 C 0.084 3.916 12 O -0.321 6.321 13 C -0.011 4.011 14 C -0.172 4.172 15 C -0.134 4.134 16 C 0.088 3.912 17 C -0.462 4.462 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.799 5.799 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.196 4.196 26 C -0.110 4.110 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.218 0.782 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.279 0.721 42 H 0.101 0.899 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 18.828 3.385 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 C -0.221 4.221 4 N -0.156 5.156 5 C -0.131 4.131 6 N -0.126 5.126 7 N -0.134 5.134 8 C -0.214 4.214 9 S 0.240 5.760 10 C -0.251 4.251 11 C 0.006 3.994 12 O -0.238 6.238 13 C -0.055 4.055 14 C -0.191 4.191 15 C -0.154 4.154 16 C 0.085 3.915 17 C -0.492 4.492 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.425 5.425 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.216 4.216 26 C -0.129 4.129 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.054 18.470 3.465 24.078 hybrid contribution -0.195 0.194 -0.633 0.690 sum -15.249 18.664 2.832 24.267 Atomic orbital electron populations 1.22192 0.92399 1.03725 1.03772 1.21631 0.96028 0.94305 0.85645 1.22190 1.02605 0.93515 1.03769 1.46870 1.38672 1.21580 1.08445 1.26549 1.04072 1.02975 0.79513 1.73978 1.09756 1.02330 1.26556 1.74760 1.20329 1.20887 0.97397 1.26819 1.00845 0.93338 1.00444 1.85287 1.61412 1.28670 1.00668 1.23439 1.03045 0.97115 1.01485 1.21928 0.95494 0.88935 0.93006 1.85793 1.65202 1.37915 1.34868 1.18535 1.03781 0.93879 0.89262 1.20606 1.04714 1.01584 0.92228 1.20942 0.98264 0.96635 0.99544 1.17616 0.90441 0.92380 0.91022 1.19488 1.33212 0.99830 0.96669 0.90428 1.25888 0.93267 0.96014 0.99081 1.69841 1.35124 1.18090 1.19469 0.86317 0.78833 0.81654 0.79932 1.19357 1.20411 1.18648 1.20601 1.05884 1.01206 0.93885 1.19618 1.00247 0.94994 0.98016 0.91427 0.91353 0.89791 0.87393 0.89780 0.91433 0.91341 0.76519 0.87501 0.87526 0.92059 0.91981 0.88758 0.86061 0.90980 0.88124 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 9.26 37.16 0.34 -0.28 16 2 C 0.13 0.70 3.60 -67.93 -0.24 0.46 16 3 C -0.16 -0.63 9.26 37.16 0.34 -0.28 16 4 N -0.46 -4.20 2.66 -111.05 -0.29 -4.50 16 5 C 0.16 1.48 11.91 -88.95 -1.06 0.42 16 6 N -0.29 -3.96 12.18 29.90 0.36 -3.60 16 7 N -0.29 -4.36 11.60 30.68 0.36 -4.00 16 8 C 0.16 1.98 8.07 -88.34 -0.71 1.27 16 9 S 0.01 0.14 21.46 -107.50 -2.31 -2.17 16 10 C -0.10 -1.39 5.60 37.16 0.21 -1.18 16 11 C 0.08 1.34 4.73 37.16 0.18 1.52 16 12 O -0.32 -6.54 10.12 -18.71 -0.19 -6.73 16 13 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 14 C -0.17 -4.01 8.96 -39.83 -0.36 -4.37 16 15 C -0.13 -3.47 8.64 -39.25 -0.34 -3.80 16 16 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 17 C -0.46 -12.20 9.04 -37.83 -0.34 -12.54 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 20 N -0.80 -20.55 10.96 55.55 0.61 -19.94 16 21 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 25 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 26 C -0.11 -2.56 9.92 -39.83 -0.40 -2.96 16 27 H 0.07 0.21 7.98 -51.93 -0.41 -0.21 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.11 0.62 7.33 -51.93 -0.38 0.24 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.21 7.99 -51.93 -0.41 -0.21 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.22 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.11 1.51 8.14 -51.92 -0.42 1.09 16 36 H 0.11 1.50 8.14 -51.91 -0.42 1.07 16 37 H 0.06 0.94 7.64 -51.93 -0.40 0.54 16 38 H 0.06 0.97 7.66 -51.93 -0.40 0.57 16 39 H 0.09 1.93 6.27 -52.49 -0.33 1.60 16 40 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 41 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 42 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -31.47 376.31 -10.54 -42.01 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.01 Total: 3.67 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -3.71 Total: -23.99 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 1.03 Total: -32.04 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.19 Total: -6.73 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.31 Total: -2.17 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.47 -10.54 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078986356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.362 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds