Wall clock time and date at job start Tue Mar 31 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38284 * 119.92880 * 2 1 4 4 C 1.38112 * 120.06873 * 180.02562 * 3 2 1 5 5 C 1.38865 * 119.93297 * 0.02562 * 4 3 2 6 6 N 1.39925 * 120.07197 * 180.02562 * 5 4 3 7 7 C 1.46493 * 120.00254 * 292.12704 * 6 5 4 8 8 C 1.50710 * 109.47062 * 270.00138 * 7 6 5 9 9 H 1.07998 * 119.99546 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99794 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00406 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99867 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47216 * 89.99720 * 12 10 8 14 14 H 1.48503 * 109.47035 * 210.00301 * 12 10 8 15 15 H 1.48501 * 109.47060 * 329.99766 * 12 10 8 16 16 C 1.34783 * 119.99735 * 112.12834 * 6 5 4 17 17 O 1.21281 * 120.00229 * 355.26561 * 16 6 5 18 18 C 1.50700 * 119.99775 * 175.26855 * 16 6 5 19 19 O 1.42902 * 109.47140 * 180.02562 * 18 16 6 20 20 C 1.42898 * 114.00213 * 180.02562 * 19 18 16 21 21 C 1.52997 * 109.47360 * 179.97438 * 20 19 18 22 22 H 1.09003 * 110.32733 * 305.69979 * 21 20 19 23 23 C 1.54477 * 110.37350 * 183.44906 * 21 20 19 24 24 C 1.54507 * 104.06182 * 217.19052 * 23 21 20 25 25 C 1.54477 * 104.06469 * 359.97438 * 24 23 21 26 26 O 1.44426 * 110.37013 * 67.94510 * 21 20 19 27 27 C 1.38875 * 119.85679 * 0.27403 * 5 4 3 28 28 C 1.38112 * 119.92786 * 359.42867 * 27 5 4 29 29 H 1.08997 * 109.47643 * 89.99694 * 1 2 3 30 30 H 1.08997 * 109.47173 * 209.99857 * 1 2 3 31 31 H 1.09007 * 109.47322 * 329.99598 * 1 2 3 32 32 H 1.08006 * 119.96347 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.03179 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47480 * 29.99683 * 7 6 5 35 35 H 1.08994 * 109.47201 * 149.99973 * 7 6 5 36 36 H 0.96997 * 120.00391 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.46893 * 299.99640 * 18 16 6 38 38 H 1.08999 * 109.47348 * 59.99798 * 18 16 6 39 39 H 1.09000 * 109.46708 * 299.99640 * 20 19 18 40 40 H 1.09001 * 109.47306 * 59.99286 * 20 19 18 41 41 H 1.08997 * 110.50847 * 335.83318 * 23 21 20 42 42 H 1.08995 * 110.51315 * 98.54538 * 23 21 20 43 43 H 1.08993 * 110.51214 * 118.64362 * 24 23 21 44 44 H 1.09000 * 110.50966 * 241.22061 * 24 23 21 45 45 H 1.09006 * 110.37303 * 142.80820 * 25 24 23 46 46 H 1.08997 * 110.37660 * 265.04303 * 25 24 23 47 47 H 1.08003 * 120.03655 * 179.72830 * 27 5 4 48 48 H 1.08003 * 119.96414 * 180.30019 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2738 0.0001 -0.0016 6 7 5.6731 0.0001 -0.0016 7 6 6.4056 0.4790 -1.1764 8 6 6.6568 -0.6725 -2.1156 9 1 6.3062 -1.6621 -1.8624 10 6 7.3341 -0.4626 -3.2980 11 7 7.7615 0.7425 -3.6061 12 14 7.6449 -1.8897 -4.4625 13 1 6.5145 -2.0035 -5.4188 14 1 8.9050 -1.6522 -5.2115 15 1 7.7622 -3.1482 -3.6830 16 6 6.3470 -0.4405 1.0793 17 8 5.7437 -0.7561 2.0830 18 6 7.8501 -0.5411 1.0407 19 8 8.3272 -1.0301 2.2958 20 6 9.7483 -1.1629 2.3658 21 6 10.1440 -1.6904 3.7463 22 1 9.7262 -1.0559 4.5281 23 6 11.6818 -1.7603 3.8749 24 6 11.9317 -3.0437 4.6981 25 6 10.5154 -3.5970 4.9701 26 8 9.6951 -3.0532 3.9114 27 6 3.5780 -1.2017 -0.0079 28 6 2.1969 -1.1984 -0.0011 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6551 2.1328 -0.0004 33 1 4.1162 2.1382 -0.0001 34 1 5.8166 1.2416 -1.6860 35 1 7.3580 0.9056 -0.8617 36 1 8.2377 0.8902 -4.4381 37 1 8.1482 -1.2263 0.2472 38 1 8.2754 0.4440 0.8488 39 1 10.0861 -1.8605 1.5994 40 1 10.2126 -0.1904 2.2019 41 1 12.1439 -1.8416 2.8911 42 1 12.0609 -0.8866 4.4050 43 1 12.5175 -3.7594 4.1213 44 1 12.4365 -2.8047 5.6342 45 1 10.5186 -4.6862 4.9263 46 1 10.1556 -3.2581 5.9416 47 1 4.1163 -2.1381 -0.0132 48 1 1.6552 -2.1327 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079095016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:58 Heat of formation + Delta-G solvation = -102.370539 kcal Electronic energy + Delta-G solvation = -28539.787199 eV Core-core repulsion = 24559.746167 eV Total energy + Delta-G solvation = -3980.041032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90927 -39.48820 -38.27004 -36.87085 -35.12997 -32.87793 -32.25203 -31.54748 -30.76134 -30.51877 -27.93881 -27.41504 -25.65757 -24.80911 -23.17396 -22.10685 -22.03716 -21.31441 -21.02162 -18.92400 -17.16705 -16.79870 -16.63286 -16.20988 -15.95604 -15.63537 -15.53213 -15.21223 -14.93059 -14.77011 -14.45011 -14.02125 -13.79898 -13.48571 -13.46174 -13.23377 -13.01508 -12.54919 -12.42710 -12.11739 -11.93096 -11.81058 -11.71636 -11.59076 -11.49862 -11.29371 -11.28133 -11.17494 -11.01850 -10.82740 -10.74578 -10.68749 -10.23812 -9.86358 -9.77234 -9.36405 -9.10663 -8.62232 -8.47561 -8.44662 -7.59181 -6.24916 -4.32696 1.73898 1.86943 3.20024 3.22433 3.27288 3.32941 3.34976 3.82390 4.14890 4.21601 4.31130 4.44111 4.70176 4.78732 5.06602 5.08641 5.15462 5.18155 5.20109 5.25387 5.35604 5.40848 5.44708 5.51760 5.56192 5.59627 5.62278 5.70218 5.74458 5.75266 5.81232 5.84579 5.90410 5.93117 5.99584 6.10016 6.16705 6.46090 6.64042 6.80279 6.81717 6.94654 6.96466 7.11606 7.25526 7.35134 7.66478 7.74863 7.95472 8.14962 8.71549 8.94464 9.35440 10.81818 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.003528 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.303040 B = 7934.965515 C =10319.953688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.113 4.113 4 C -0.120 4.120 5 C 0.173 3.827 6 N -0.562 5.562 7 C 0.237 3.763 8 C -0.540 4.540 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.524 3.476 17 O -0.537 6.537 18 C 0.052 3.948 19 O -0.363 6.363 20 C 0.067 3.933 21 C 0.079 3.921 22 H 0.077 0.923 23 C -0.149 4.149 24 C -0.154 4.154 25 C 0.041 3.959 26 O -0.358 6.358 27 C -0.102 4.102 28 C -0.113 4.113 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.120 0.880 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -1.674 11.008 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.132 4.132 4 C -0.140 4.140 5 C 0.082 3.918 6 N -0.292 5.292 7 C 0.119 3.881 8 C -0.579 4.579 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.724 3.276 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.312 3.688 17 O -0.414 6.414 18 C -0.027 4.027 19 O -0.281 6.281 20 C -0.010 4.010 21 C 0.021 3.979 22 H 0.095 0.905 23 C -0.187 4.187 24 C -0.192 4.192 25 C -0.037 4.037 26 O -0.277 6.277 27 C -0.122 4.122 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.138 0.862 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.427 -1.881 11.426 11.668 hybrid contribution 0.778 -0.507 -1.114 1.450 sum 2.205 -2.389 10.312 10.812 Atomic orbital electron populations 1.20710 0.91631 1.02210 1.01859 1.19797 0.95678 0.93249 1.01812 1.20759 0.93447 0.97273 1.01712 1.21177 0.94182 0.97432 1.01178 1.17510 0.83244 0.92880 0.98142 1.45841 1.03374 1.62976 1.16973 1.19596 0.91759 0.95698 0.81047 1.21463 1.37127 0.95249 1.04031 0.91878 1.24916 0.95086 0.95985 0.97595 1.69913 1.37813 1.20601 1.24520 0.86507 0.77831 0.82421 0.80867 1.20380 1.20986 1.19644 1.20129 0.89186 0.76919 0.82528 1.90662 1.70222 1.48783 1.31763 1.22236 0.92501 1.00836 0.87169 1.87973 1.19988 1.86662 1.33479 1.22555 0.82705 0.99711 0.96050 1.22992 0.92603 0.85138 0.97195 0.90503 1.22926 0.95593 0.98540 1.01614 1.22928 0.98215 0.97418 1.00641 1.23420 0.89163 0.99511 0.91558 1.89322 1.58633 1.24880 1.54855 1.21232 0.94047 0.97731 0.99171 1.20804 0.93553 0.97316 1.01445 0.91582 0.91952 0.91961 0.86271 0.86033 0.94043 0.94125 0.92410 0.88682 0.90380 0.92180 0.91821 0.90207 0.90142 0.90607 0.90568 0.89193 0.92344 0.86213 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.00 0.36 -0.86 16 2 C -0.11 -1.61 5.88 -104.59 -0.62 -2.23 16 3 C -0.11 -1.81 9.69 -39.61 -0.38 -2.19 16 4 C -0.12 -2.24 9.69 -39.40 -0.38 -2.62 16 5 C 0.17 3.66 4.74 -83.70 -0.40 3.26 16 6 N -0.56 -12.48 2.51 -114.74 -0.29 -12.77 16 7 C 0.24 5.62 4.88 -5.19 -0.03 5.60 16 8 C -0.54 -13.92 9.16 -34.44 -0.32 -14.23 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -24.00 13.29 55.43 0.74 -23.26 16 12 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.52 11.77 7.60 -10.98 -0.08 11.69 16 17 O -0.54 -13.46 16.26 -14.35 -0.23 -13.69 16 18 C 0.05 1.01 5.08 36.01 0.18 1.20 16 19 O -0.36 -7.02 9.88 -57.53 -0.57 -7.59 16 20 C 0.07 0.98 5.54 37.16 0.21 1.19 16 21 C 0.08 1.03 3.57 -25.96 -0.09 0.94 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 C -0.15 -1.39 6.63 -25.16 -0.17 -1.56 16 24 C -0.15 -1.30 7.09 -25.17 -0.18 -1.47 16 25 C 0.04 0.43 7.63 37.93 0.29 0.72 16 26 O -0.36 -5.49 11.36 -35.63 -0.40 -5.90 16 27 C -0.10 -2.04 9.56 -39.39 -0.38 -2.42 16 28 C -0.11 -1.88 9.69 -39.61 -0.38 -2.27 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.08 -51.92 -0.42 0.20 16 32 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 34 H 0.04 1.04 7.86 -51.93 -0.41 0.63 16 35 H 0.04 0.96 6.47 -51.93 -0.34 0.62 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.10 1.89 7.91 -51.93 -0.41 1.48 16 38 H 0.08 1.38 7.26 -51.93 -0.38 1.01 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.71 7.87 -51.93 -0.41 0.31 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 48 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -32.14 401.23 -10.01 -42.16 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.82 Total: 3.25 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.46 Total: -3.60 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.45 Total: -36.03 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.21 Total: -27.17 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.14 -10.01 -42.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079095016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.213 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds