Wall clock time and date at job start Tue Mar 31 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99447 * 3 2 1 5 5 H 1.48499 * 109.47352 * 29.99600 * 3 2 1 6 6 H 1.48506 * 109.46749 * 149.99705 * 3 2 1 7 7 C 1.39031 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36898 * 119.99740 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99514 * 180.27661 * 9 7 2 11 11 O 1.21603 * 120.00257 * 359.71970 * 10 9 7 12 12 C 1.47577 * 119.99657 * 179.72272 * 10 9 7 13 13 C 1.39745 * 120.12907 * 359.72132 * 12 10 9 14 14 C 1.37783 * 119.87626 * 179.74323 * 13 12 10 15 15 C 1.38711 * 120.14382 * 0.55912 * 14 13 12 16 16 F 1.35111 * 119.86813 * 179.71970 * 15 14 13 17 17 C 1.38611 * 120.26332 * 359.68932 * 15 14 13 18 18 C 1.37928 * 120.11902 * 0.03122 * 17 15 14 19 19 I 2.09494 * 120.07418 * 179.97438 * 18 17 15 20 20 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99940 * 359.97438 * 9 7 2 22 22 H 1.07994 * 120.06255 * 359.97438 * 13 12 10 23 23 H 1.08008 * 119.92709 * 180.27075 * 14 13 12 24 24 H 1.08000 * 119.94280 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4953 2.0464 -1.4001 5 1 1.4452 2.6528 0.6999 6 1 3.5453 1.4401 0.7001 7 6 2.0089 -1.2040 0.0005 8 1 3.0888 -1.2040 0.0010 9 7 1.3243 -2.3896 0.0005 10 6 1.9983 -3.5568 0.0067 11 8 3.2143 -3.5568 0.0071 12 6 1.2603 -4.8348 0.0129 13 6 -0.1371 -4.8379 0.0182 14 6 -0.8208 -6.0341 0.0187 15 6 -0.1251 -7.2341 0.0255 16 9 -0.8012 -8.4038 0.0316 17 6 1.2610 -7.2379 0.0254 18 6 1.9565 -6.0467 0.0192 19 53 4.0514 -6.0542 0.0199 20 1 -0.4850 0.8400 -0.0004 21 1 0.3543 -2.3895 0.0005 22 1 -0.6802 -3.9044 0.0183 23 1 -1.9009 -6.0374 0.0184 24 1 1.7975 -8.1752 0.0303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084344389.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:25 Heat of formation + Delta-G solvation = -33.103109 kcal Electronic energy + Delta-G solvation = -14437.886706 eV Core-core repulsion = 11511.434170 eV Total energy + Delta-G solvation = -2926.452535 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 334.956 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.82865 -39.51709 -37.31456 -34.36795 -32.23148 -31.32728 -30.33325 -27.77751 -25.25081 -23.11716 -22.03242 -19.78815 -18.30818 -17.24186 -16.71760 -15.93881 -15.53547 -14.94398 -14.41395 -14.02632 -13.76993 -13.27045 -13.08102 -12.89503 -12.17672 -12.06816 -11.74107 -11.21487 -10.68645 -10.52823 -10.38913 -9.98210 -9.74650 -9.68621 -8.74314 -8.47565 -8.16287 -7.65318 -6.68846 -3.98552 0.93340 1.23189 1.63077 3.04765 3.15865 3.21429 3.33841 3.98993 4.25732 4.33813 4.68469 4.84166 4.98769 5.16389 5.35743 5.62758 5.74476 6.01627 6.09872 6.33284 6.44163 6.87179 7.31774 7.82598 8.36675 8.93551 9.27252 9.83157 10.47392 Molecular weight = 334.96amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005950 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.942491 B = 4705.041440 C = 6356.132297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.023 3.977 3 Si 0.936 3.064 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.287 4.287 8 H 0.112 0.888 9 N -0.534 5.534 10 C 0.446 3.554 11 O -0.558 6.558 12 C -0.080 4.080 13 C -0.076 4.076 14 C -0.139 4.139 15 C 0.090 3.910 16 F -0.141 7.141 17 C -0.122 4.122 18 C -0.061 4.061 19 I 0.009 6.991 20 H 0.278 0.722 21 H 0.392 0.608 22 H 0.142 0.858 23 H 0.139 0.861 24 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -12.566 0.063 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.417 4.417 8 H 0.130 0.870 9 N -0.168 5.168 10 C 0.233 3.767 11 O -0.444 6.444 12 C -0.087 4.087 13 C -0.098 4.098 14 C -0.159 4.159 15 C 0.068 3.932 16 F -0.119 7.119 17 C -0.144 4.144 18 C -0.201 4.201 19 I 0.157 6.843 20 H 0.088 0.912 21 H 0.227 0.773 22 H 0.160 0.840 23 H 0.157 0.843 24 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.388 -12.388 0.068 12.843 hybrid contribution -1.914 0.728 -0.011 2.048 sum 1.474 -11.660 0.057 11.753 Atomic orbital electron populations 1.69587 1.06230 1.29026 1.47575 1.25436 0.95723 1.00306 0.96613 0.85745 0.79351 0.79961 0.78698 1.20062 1.20669 1.19015 1.19905 0.93912 0.81874 1.46013 0.87018 1.41951 1.09435 1.04745 1.60674 1.17580 0.88051 0.83268 0.87785 1.90833 1.11874 1.84575 1.57122 1.20242 0.93476 0.95152 0.99808 1.21274 0.92976 0.98186 0.97333 1.21105 1.00896 0.90972 1.02880 1.17697 0.89729 0.81275 1.04460 1.91483 1.80170 1.46196 1.94086 1.20824 0.92115 0.98305 1.03115 1.24407 0.99517 0.93233 1.02926 1.96446 0.91626 1.97997 1.98233 0.91248 0.77336 0.84030 0.84304 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.52 13.05 55.50 0.72 -21.79 14 2 C 0.02 0.59 5.50 -17.45 -0.10 0.49 14 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 14 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 14 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 14 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 7 C -0.29 -7.53 9.68 -15.00 -0.15 -7.67 14 8 H 0.11 3.05 7.15 -52.49 -0.38 2.67 14 9 N -0.53 -12.94 5.23 -11.91 -0.06 -13.00 14 10 C 0.45 10.30 7.70 -12.45 -0.10 10.20 14 11 O -0.56 -13.91 12.43 5.27 0.07 -13.84 14 12 C -0.08 -1.54 5.88 -104.95 -0.62 -2.16 14 13 C -0.08 -1.24 9.54 -39.18 -0.37 -1.61 14 14 C -0.14 -1.94 10.01 -39.57 -0.40 -2.34 14 15 C 0.09 1.29 7.31 -39.27 -0.29 1.01 14 16 F -0.14 -1.93 17.26 2.25 0.04 -1.89 14 17 C -0.12 -1.82 9.72 -39.56 -0.38 -2.20 14 18 C -0.06 -1.07 6.23 -39.12 -0.24 -1.32 14 19 I 0.01 0.16 36.53 -73.02 -2.67 -2.51 14 20 H 0.28 6.65 8.31 -40.82 -0.34 6.31 14 21 H 0.39 8.98 5.92 -40.82 -0.24 8.74 14 22 H 0.14 2.19 6.40 -52.49 -0.34 1.86 14 23 H 0.14 1.54 8.06 -52.48 -0.42 1.12 14 24 H 0.14 1.78 8.06 -52.49 -0.42 1.35 14 LS Contribution 250.84 15.07 3.78 3.78 Total: -1.00 -27.33 250.84 -6.72 -34.05 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -0.93 Total: 6.01 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.64 Total: -5.60 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.66 Total: -34.79 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.07 Total: -13.84 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 53 Polarization: 0.16 SS G_CDS: -2.67 Total: -2.51 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.33 -6.72 -34.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084344389.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.947 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds