Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00104 * 2 1 4 4 C 1.50709 * 109.46888 * 90.00436 * 3 2 1 5 5 H 1.07992 * 119.99666 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99973 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00091 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99748 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46928 * 60.00624 * 8 6 4 10 10 H 1.48502 * 109.46977 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47222 * 300.00547 * 8 6 4 12 12 C 1.34776 * 119.99981 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99941 * 179.97438 * 12 2 1 14 14 C 1.50701 * 120.00004 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.46806 * 180.02562 * 14 12 2 16 16 N 1.46903 * 109.46697 * 180.02562 * 15 14 12 17 17 C 1.47843 * 111.00204 * 285.09954 * 16 15 14 18 18 C 1.54903 * 104.79815 * 213.63813 * 17 16 15 19 19 C 1.55137 * 101.65571 * 37.06762 * 18 17 16 20 20 C 1.47448 * 111.00057 * 164.25691 * 16 15 14 21 21 H 1.08995 * 109.88823 * 242.82827 * 20 16 15 22 22 C 1.50700 * 109.88567 * 3.85184 * 20 16 15 23 23 C 1.38268 * 119.98388 * 244.50284 * 22 20 16 24 24 C 1.38223 * 120.04762 * 179.72806 * 23 22 20 25 25 C 1.38225 * 120.02741 * 0.54699 * 24 23 22 26 26 C 1.38438 * 119.97203 * 359.73039 * 25 24 23 27 27 F 1.35100 * 120.02823 * 180.02562 * 26 25 24 28 28 C 1.38178 * 119.98600 * 64.77760 * 22 20 16 29 29 H 1.09006 * 109.47039 * 269.99815 * 1 2 3 30 30 H 1.09007 * 109.47246 * 29.98991 * 1 2 3 31 31 H 1.08991 * 109.47637 * 149.99541 * 1 2 3 32 32 H 1.08999 * 109.47401 * 210.00138 * 3 2 1 33 33 H 1.09004 * 109.47598 * 330.00767 * 3 2 1 34 34 H 0.97004 * 119.99719 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46774 * 300.00347 * 14 12 2 36 36 H 1.09000 * 109.46899 * 60.00730 * 14 12 2 37 37 H 1.09000 * 109.47235 * 299.99449 * 15 14 12 38 38 H 1.08992 * 109.47439 * 60.00085 * 15 14 12 39 39 H 1.09009 * 110.37126 * 332.46965 * 17 16 15 40 40 H 1.08998 * 110.37470 * 94.80496 * 17 16 15 41 41 H 1.09002 * 110.98869 * 278.97706 * 18 17 16 42 42 H 1.08998 * 111.02429 * 155.17570 * 18 17 16 43 43 H 1.08992 * 110.70795 * 205.96523 * 19 18 17 44 44 H 1.08996 * 110.70442 * 82.72813 * 19 18 17 45 45 H 1.07998 * 119.97907 * 359.97438 * 23 22 20 46 46 H 1.08006 * 119.99147 * 180.27585 * 24 23 22 47 47 H 1.08000 * 120.01365 * 179.74415 * 25 24 23 48 48 H 1.07997 * 120.01388 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0956 2.2417 6 6 3.1270 2.8773 1.6729 7 7 3.5543 3.6175 0.6733 8 14 3.4390 3.4160 3.4341 9 1 4.2415 2.3807 4.1336 10 1 4.1814 4.7021 3.4342 11 1 2.1417 3.5937 4.1346 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6450 -4.9074 -0.0011 17 6 1.0683 -5.1869 1.3311 18 6 1.1264 -6.7284 1.4720 19 6 2.4726 -7.0563 0.7741 20 6 2.5283 -6.0274 -0.3747 21 1 2.1782 -6.4827 -1.3009 22 6 3.9402 -5.5303 -0.5497 23 6 4.5438 -5.5875 -1.7924 24 6 5.8367 -5.1268 -1.9557 25 6 6.5317 -4.6188 -0.8742 26 6 5.9304 -4.5663 0.3716 27 9 6.6085 -4.0695 1.4292 28 6 4.6329 -5.0229 0.5328 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8898 -0.5138 32 1 3.1499 1.1384 -0.5138 33 1 1.6084 2.0285 -0.5137 34 1 4.0311 4.4434 0.8507 35 1 0.7590 -2.5302 0.8897 36 1 0.7584 -2.5299 -0.8904 37 1 3.0062 -3.5775 -0.8905 38 1 3.0062 -3.5775 0.8894 39 1 1.6648 -4.7118 2.1101 40 1 0.0360 -4.8402 1.3781 41 1 0.2922 -7.1997 0.9523 42 1 1.1480 -7.0247 2.5207 43 1 2.4653 -8.0728 0.3809 44 1 3.3073 -6.9133 1.4603 45 1 4.0033 -5.9888 -2.6369 46 1 6.3058 -5.1679 -2.9277 47 1 7.5434 -4.2627 -1.0012 48 1 4.1626 -4.9820 1.5042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089340310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -44.591492 kcal Electronic energy + Delta-G solvation = -29577.446876 eV Core-core repulsion = 25546.858210 eV Total energy + Delta-G solvation = -4030.588666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -48.80277 -40.66049 -38.84402 -37.87177 -34.78475 -33.29975 -32.52037 -32.09450 -30.65622 -29.48824 -27.98089 -27.51830 -25.71139 -24.11803 -23.13133 -22.60025 -22.12526 -21.10467 -19.96679 -18.29770 -17.40380 -16.75543 -16.51692 -16.33535 -16.07851 -15.73729 -15.52373 -15.30253 -15.19340 -15.01172 -14.24892 -14.16405 -13.99778 -13.70178 -13.35428 -13.17014 -12.92208 -12.62810 -12.34211 -12.07070 -12.03417 -11.94859 -11.93003 -11.77108 -11.56843 -11.37800 -11.31822 -11.06436 -10.99576 -10.90538 -10.86477 -10.63773 -10.50493 -10.12077 -9.60869 -8.94006 -8.83908 -8.80517 -8.39925 -8.34531 -7.58197 -6.00937 -4.05382 1.07123 1.14824 3.33695 3.37947 3.40197 3.42498 3.52639 3.77764 4.14116 4.22567 4.41324 4.43485 4.48605 4.53805 4.69667 4.89921 4.93706 5.07033 5.17670 5.23303 5.25399 5.29885 5.32374 5.35194 5.45253 5.56763 5.62204 5.63667 5.66496 5.74390 5.81773 5.87657 5.94689 5.98759 5.99342 6.06924 6.16053 6.17721 6.23196 6.23993 6.36240 6.81505 6.86903 6.97341 7.10560 7.48255 7.59968 7.95560 8.27616 8.48098 8.94017 9.16510 9.59484 11.07149 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003531 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.310008 B = 7928.633886 C = 8977.552632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.604 5.604 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.503 3.497 13 O -0.543 6.543 14 C -0.133 4.133 15 C 0.062 3.938 16 N -0.519 5.519 17 C 0.035 3.965 18 C -0.129 4.129 19 C -0.137 4.137 20 C 0.113 3.887 21 H 0.097 0.903 22 C -0.069 4.069 23 C -0.123 4.123 24 C -0.089 4.089 25 C -0.153 4.153 26 C 0.109 3.891 27 F -0.138 7.138 28 C -0.141 4.141 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -23.435 -3.821 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.289 3.711 13 O -0.421 6.421 14 C -0.174 4.174 15 C -0.065 4.065 16 N -0.242 5.242 17 C -0.093 4.093 18 C -0.167 4.167 19 C -0.175 4.175 20 C 0.005 3.995 21 H 0.115 0.885 22 C -0.070 4.070 23 C -0.142 4.142 24 C -0.107 4.107 25 C -0.172 4.172 26 C 0.090 3.910 27 F -0.116 7.116 28 C -0.161 4.161 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.647 -23.149 -4.193 23.806 hybrid contribution 0.872 0.723 1.832 2.154 sum -2.774 -22.426 -2.361 22.720 Atomic orbital electron populations 1.21611 0.81500 1.01637 1.01041 1.48144 1.06137 1.07882 1.71479 1.19278 0.92550 0.78133 0.97404 1.21392 1.36422 1.06224 0.92332 0.92654 1.24928 0.95374 0.96410 0.97371 1.69924 1.38435 1.14368 1.30748 0.86576 0.78344 0.77827 0.84786 1.20211 1.21136 1.20258 1.20315 0.88110 0.85160 0.77477 1.90676 1.13931 1.87334 1.50109 1.21611 0.99222 0.92756 1.03795 1.22324 0.94599 0.86935 1.02679 1.63864 1.31672 1.01806 1.26861 1.23190 1.00781 0.95439 0.89853 1.22708 0.97470 0.95681 1.00800 1.22943 0.98219 0.99238 0.97107 1.21491 0.86922 0.91423 0.99621 0.88473 1.19949 0.95832 0.98183 0.93045 1.21048 0.95315 1.01183 0.96679 1.20966 0.94424 0.97047 0.98267 1.21162 1.01590 1.02807 0.91627 1.17638 0.90928 0.98137 0.84333 1.91520 1.79610 1.85161 1.55341 1.20936 0.93186 1.01723 1.00227 0.93390 0.91519 0.92461 0.93931 0.95112 0.92701 0.89903 0.89012 0.89692 0.93026 0.93316 0.89824 0.90494 0.90771 0.90444 0.90930 0.85330 0.85043 0.84831 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.29 59.84 0.62 2.02 16 2 N -0.60 -13.23 2.86 -182.95 -0.52 -13.75 16 3 C 0.25 6.63 5.20 -5.19 -0.03 6.60 16 4 C -0.52 -15.33 9.39 -34.44 -0.32 -15.65 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 8 Si 0.90 22.40 29.54 -169.99 -5.02 17.37 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.50 10.77 7.67 -10.99 -0.08 10.69 16 13 O -0.54 -14.04 15.56 5.55 0.09 -13.95 16 14 C -0.13 -2.06 4.37 -27.88 -0.12 -2.18 16 15 C 0.06 0.92 2.72 -3.82 -0.01 0.91 16 16 N -0.52 -5.96 5.12 -224.73 -1.15 -7.11 16 17 C 0.03 0.35 6.07 -2.30 -0.01 0.34 16 18 C -0.13 -1.00 7.08 -24.60 -0.17 -1.17 16 19 C -0.14 -1.12 6.33 -24.91 -0.16 -1.28 16 20 C 0.11 1.12 3.64 -67.87 -0.25 0.87 16 21 H 0.10 0.86 7.91 -51.93 -0.41 0.45 16 22 C -0.07 -0.79 2.97 -104.63 -0.31 -1.10 16 23 C -0.12 -1.29 9.55 -39.58 -0.38 -1.67 16 24 C -0.09 -0.95 10.04 -39.59 -0.40 -1.35 16 25 C -0.15 -1.92 10.03 -39.51 -0.40 -2.32 16 26 C 0.11 1.59 7.30 -39.42 -0.29 1.30 16 27 F -0.14 -2.25 17.27 2.25 0.04 -2.21 16 28 C -0.14 -1.89 6.31 -39.51 -0.25 -2.13 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.05 7.89 -51.92 -0.41 0.64 16 31 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.03 0.83 7.89 -51.93 -0.41 0.43 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 1.16 7.67 -51.93 -0.40 0.77 16 36 H 0.09 1.26 7.40 -51.93 -0.38 0.87 16 37 H 0.08 1.40 6.43 -51.93 -0.33 1.07 16 38 H 0.05 0.86 5.31 -51.93 -0.28 0.59 16 39 H 0.05 0.54 7.53 -51.92 -0.39 0.15 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 45 H 0.13 1.04 7.96 -52.49 -0.42 0.62 16 46 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 47 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 48 H 0.13 1.70 6.76 -52.49 -0.35 1.35 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -34.51 385.53 -10.04 -44.55 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.35 Total: 0.19 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.66 Total: -4.42 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.94 Total: -47.34 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.51 -10.04 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089340310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.044 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds