Wall clock time and date at job start Tue Mar 31 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00104 * 2 1 4 4 C 1.50709 * 109.46888 * 90.00436 * 3 2 1 5 5 H 1.07992 * 119.99666 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99973 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00091 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99748 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46928 * 60.00624 * 8 6 4 10 10 H 1.48502 * 109.46977 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47222 * 300.00547 * 8 6 4 12 12 C 1.34776 * 119.99981 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99941 * 179.97438 * 12 2 1 14 14 C 1.50701 * 120.00004 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.46806 * 180.02562 * 14 12 2 16 16 N 1.46903 * 109.46697 * 180.02562 * 15 14 12 17 17 C 1.47843 * 111.00204 * 285.09954 * 16 15 14 18 18 C 1.54903 * 104.79815 * 213.63813 * 17 16 15 19 19 C 1.55137 * 101.65571 * 37.06762 * 18 17 16 20 20 C 1.47448 * 111.00057 * 164.25691 * 16 15 14 21 21 H 1.08995 * 109.88823 * 242.82827 * 20 16 15 22 22 C 1.50700 * 109.88567 * 3.85184 * 20 16 15 23 23 C 1.38268 * 119.98388 * 244.50284 * 22 20 16 24 24 C 1.38223 * 120.04762 * 179.72806 * 23 22 20 25 25 C 1.38225 * 120.02741 * 0.54699 * 24 23 22 26 26 C 1.38438 * 119.97203 * 359.73039 * 25 24 23 27 27 F 1.35100 * 120.02823 * 180.02562 * 26 25 24 28 28 C 1.38178 * 119.98600 * 64.77760 * 22 20 16 29 29 H 1.09006 * 109.47039 * 269.99815 * 1 2 3 30 30 H 1.09007 * 109.47246 * 29.98991 * 1 2 3 31 31 H 1.08991 * 109.47637 * 149.99541 * 1 2 3 32 32 H 1.08999 * 109.47401 * 210.00138 * 3 2 1 33 33 H 1.09004 * 109.47598 * 330.00767 * 3 2 1 34 34 H 0.97004 * 119.99719 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46774 * 300.00347 * 14 12 2 36 36 H 1.09000 * 109.46899 * 60.00730 * 14 12 2 37 37 H 1.09000 * 109.47235 * 299.99449 * 15 14 12 38 38 H 1.08992 * 109.47439 * 60.00085 * 15 14 12 39 39 H 1.09009 * 110.37126 * 332.46965 * 17 16 15 40 40 H 1.08998 * 110.37470 * 94.80496 * 17 16 15 41 41 H 1.09002 * 110.98869 * 278.97706 * 18 17 16 42 42 H 1.08998 * 111.02429 * 155.17570 * 18 17 16 43 43 H 1.08992 * 110.70795 * 205.96523 * 19 18 17 44 44 H 1.08996 * 110.70442 * 82.72813 * 19 18 17 45 45 H 1.07998 * 119.97907 * 359.97438 * 23 22 20 46 46 H 1.08006 * 119.99147 * 180.27585 * 24 23 22 47 47 H 1.08000 * 120.01365 * 179.74415 * 25 24 23 48 48 H 1.07997 * 120.01388 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0956 2.2417 6 6 3.1270 2.8773 1.6729 7 7 3.5543 3.6175 0.6733 8 14 3.4390 3.4160 3.4341 9 1 4.2415 2.3807 4.1336 10 1 4.1814 4.7021 3.4342 11 1 2.1417 3.5937 4.1346 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6450 -4.9074 -0.0011 17 6 1.0683 -5.1869 1.3311 18 6 1.1264 -6.7284 1.4720 19 6 2.4726 -7.0563 0.7741 20 6 2.5283 -6.0274 -0.3747 21 1 2.1782 -6.4827 -1.3009 22 6 3.9402 -5.5303 -0.5497 23 6 4.5438 -5.5875 -1.7924 24 6 5.8367 -5.1268 -1.9557 25 6 6.5317 -4.6188 -0.8742 26 6 5.9304 -4.5663 0.3716 27 9 6.6085 -4.0695 1.4292 28 6 4.6329 -5.0229 0.5328 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8898 -0.5138 32 1 3.1499 1.1384 -0.5138 33 1 1.6084 2.0285 -0.5137 34 1 4.0311 4.4434 0.8507 35 1 0.7590 -2.5302 0.8897 36 1 0.7584 -2.5299 -0.8904 37 1 3.0062 -3.5775 -0.8905 38 1 3.0062 -3.5775 0.8894 39 1 1.6648 -4.7118 2.1101 40 1 0.0360 -4.8402 1.3781 41 1 0.2922 -7.1997 0.9523 42 1 1.1480 -7.0247 2.5207 43 1 2.4653 -8.0728 0.3809 44 1 3.3073 -6.9133 1.4603 45 1 4.0033 -5.9888 -2.6369 46 1 6.3058 -5.1679 -2.9277 47 1 7.5434 -4.2627 -1.0012 48 1 4.1626 -4.9820 1.5042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089340310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:17 Heat of formation + Delta-G solvation = -66.557042 kcal Electronic energy + Delta-G solvation = -29578.399374 eV Core-core repulsion = 25546.858210 eV Total energy + Delta-G solvation = -4031.541164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.98112 -41.59203 -40.49286 -38.77305 -36.61897 -34.83045 -34.24470 -32.96604 -31.59299 -30.83995 -29.30436 -28.75806 -27.28613 -25.62527 -24.35201 -23.55134 -23.48067 -21.93354 -20.89805 -19.92031 -18.73683 -18.44607 -17.97424 -17.39164 -17.25212 -17.06007 -16.71829 -16.68652 -16.50103 -16.24546 -15.95138 -15.43455 -14.95426 -14.67704 -14.48652 -14.32551 -14.19806 -13.97340 -13.85145 -13.56901 -13.44017 -13.21229 -13.18517 -12.85030 -12.79970 -12.71720 -12.60353 -12.54458 -12.21312 -12.18767 -12.03167 -11.89558 -11.75779 -11.72789 -11.54384 -10.67031 -10.60151 -9.87639 -9.79383 -9.42882 -9.29205 -8.25121 -6.40064 0.13694 0.19422 1.32397 1.37181 1.44312 1.84353 2.27182 2.39597 2.54908 3.03566 3.06035 3.22641 3.52817 3.67532 3.76652 3.81233 3.89989 4.00189 4.08946 4.14881 4.21652 4.30890 4.36738 4.41181 4.52425 4.59204 4.64888 4.72060 4.80820 4.85014 4.90097 4.92856 4.97386 4.99215 5.02805 5.05944 5.09359 5.11754 5.18036 5.21038 5.30447 5.37031 5.49738 5.53891 5.83245 5.89246 5.96327 5.99782 6.03950 6.66745 6.78674 7.25777 7.48814 8.81756 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003531 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.310008 B = 7928.633886 C = 8977.552632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.258 1.258 12 C 0.492 3.508 13 O -0.600 6.600 14 C -0.115 4.115 15 C 0.076 3.924 16 N -0.511 5.511 17 C 0.027 3.973 18 C -0.119 4.119 19 C -0.134 4.134 20 C 0.111 3.889 21 H 0.120 0.880 22 C -0.071 4.071 23 C -0.119 4.119 24 C -0.088 4.088 25 C -0.167 4.167 26 C 0.066 3.934 27 F -0.160 7.160 28 C -0.151 4.151 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.101 0.899 32 H -0.005 1.005 33 H 0.025 0.975 34 H 0.268 0.732 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.030 0.970 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.163 0.837 46 H 0.164 0.836 47 H 0.141 0.859 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 -25.564 -4.244 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.790 3.210 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.182 1.182 12 C 0.281 3.719 13 O -0.481 6.481 14 C -0.155 4.155 15 C -0.053 4.053 16 N -0.234 5.234 17 C -0.100 4.100 18 C -0.157 4.157 19 C -0.173 4.173 20 C 0.003 3.997 21 H 0.138 0.862 22 C -0.072 4.072 23 C -0.138 4.138 24 C -0.106 4.106 25 C -0.186 4.186 26 C 0.047 3.953 27 F -0.139 7.139 28 C -0.170 4.170 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.013 0.987 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.077 0.923 45 H 0.180 0.820 46 H 0.181 0.819 47 H 0.159 0.841 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.352 -25.300 -4.617 26.491 hybrid contribution 1.686 1.361 1.891 2.876 sum -4.666 -23.939 -2.726 24.541 Atomic orbital electron populations 1.21924 0.77760 1.04084 1.02361 1.48192 1.08476 1.06358 1.71263 1.18750 0.91066 0.80506 0.95899 1.21668 1.36951 1.06573 0.93071 0.93153 1.25854 0.94846 0.96413 1.01989 1.70042 1.38854 1.14801 1.33059 0.85502 0.78938 0.77375 0.79213 1.20704 1.20029 1.18200 1.21420 0.87832 0.86779 0.75834 1.90650 1.16767 1.88256 1.52457 1.21545 0.98895 0.89026 1.06076 1.22035 0.94073 0.88670 1.00495 1.63925 1.31041 1.00747 1.27684 1.23316 1.00837 0.97303 0.88530 1.22695 0.97601 0.93725 1.01660 1.22944 0.98091 0.99885 0.96334 1.21705 0.85541 0.91174 1.01249 0.86184 1.20211 0.96649 0.97559 0.92806 1.21502 0.95256 0.99854 0.97144 1.21390 0.94618 0.95729 0.98832 1.21429 1.02346 1.03258 0.91530 1.18124 0.92025 1.00299 0.84802 1.91447 1.80143 1.85826 1.56439 1.20976 0.92925 1.02422 1.00715 0.92528 0.91131 0.88032 0.98719 0.95750 0.92351 0.87725 0.85984 0.91649 0.95864 0.95149 0.88537 0.88798 0.89824 0.88189 0.92333 0.81989 0.81877 0.84093 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.47 10.29 127.77 1.31 3.78 16 2 N -0.61 -26.99 2.86 -851.12 -2.43 -29.42 16 3 C 0.26 14.58 5.20 85.64 0.45 15.03 16 4 C -0.54 -32.63 9.39 25.60 0.24 -32.39 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.48 5.46 84.65 0.46 0.94 16 7 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 8 Si 0.97 46.40 29.54 68.60 2.03 48.43 16 9 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 12 C 0.49 21.40 7.67 87.66 0.67 22.07 16 13 O -0.60 -32.75 15.56 -3.05 -0.05 -32.80 16 14 C -0.12 -3.37 4.37 29.85 0.13 -3.24 16 15 C 0.08 2.21 2.72 86.30 0.23 2.44 16 16 N -0.51 -10.58 5.12 -864.90 -4.43 -15.01 16 17 C 0.03 0.49 6.07 86.77 0.53 1.02 16 18 C -0.12 -1.48 7.08 31.98 0.23 -1.26 16 19 C -0.13 -1.88 6.33 31.77 0.20 -1.67 16 20 C 0.11 1.92 3.64 44.51 0.16 2.08 16 21 H 0.12 1.61 7.91 -2.39 -0.02 1.59 16 22 C -0.07 -1.57 2.97 -19.87 -0.06 -1.63 16 23 C -0.12 -2.26 9.55 22.27 0.21 -2.05 16 24 C -0.09 -1.78 10.04 22.26 0.22 -1.56 16 25 C -0.17 -4.38 10.03 22.31 0.22 -4.16 16 26 C 0.07 2.11 7.30 22.38 0.16 2.27 16 27 F -0.16 -5.79 17.27 44.97 0.78 -5.02 16 28 C -0.15 -4.27 6.31 22.31 0.14 -4.13 16 29 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 2.10 7.89 -2.38 -0.02 2.08 16 31 H 0.10 2.20 6.44 -2.39 -0.02 2.18 16 32 H -0.01 -0.35 7.42 -2.39 -0.02 -0.36 16 33 H 0.02 1.38 7.89 -2.38 -0.02 1.36 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.10 2.65 7.67 -2.39 -0.02 2.63 16 36 H 0.12 2.88 7.40 -2.39 -0.02 2.86 16 37 H 0.07 2.16 6.43 -2.39 -0.02 2.14 16 38 H 0.02 0.81 5.31 -2.39 -0.01 0.80 16 39 H 0.03 0.66 7.53 -2.38 -0.02 0.64 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.00 6.59 -2.39 -0.02 0.98 16 45 H 0.16 1.96 7.96 -2.91 -0.02 1.94 16 46 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 47 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 48 H 0.12 3.44 6.76 -2.91 -0.02 3.42 16 Total: -1.00 -80.78 385.53 2.65 -78.13 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.95 Total: 15.60 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.52 Total: -2.45 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -6.58 Total: -101.89 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.05 Total: -32.80 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.78 Total: -5.02 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -80.78 2.65 -78.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089340310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.568 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds