Wall clock time and date at job start Tue Mar 31 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48503 * 109.46776 * 239.99885 * 3 2 1 5 5 H 1.48501 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47146 * 119.99505 * 3 2 1 7 7 C 1.37874 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99957 * 264.93363 * 10 9 7 12 12 C 1.52995 * 109.47005 * 264.13482 * 11 10 9 13 13 C 1.53001 * 117.49281 * 243.62012 * 12 11 10 14 14 C 1.52994 * 117.49652 * 175.00042 * 12 11 10 15 15 C 1.34773 * 120.00163 * 84.93034 * 10 9 7 16 16 O 1.21278 * 120.00123 * 185.57244 * 15 10 9 17 17 C 1.50703 * 120.00100 * 5.57368 * 15 10 9 18 18 H 1.09000 * 109.49491 * 311.20195 * 17 15 10 19 19 C 1.53033 * 109.49703 * 71.29692 * 17 15 10 20 20 C 1.53042 * 109.53799 * 181.31712 * 19 17 15 21 21 C 1.53196 * 109.31406 * 298.63978 * 20 19 17 22 22 N 1.46924 * 108.77469 * 54.62894 * 21 20 19 23 23 C 1.34777 * 120.62568 * 126.39714 * 22 21 20 24 24 O 1.21286 * 120.00115 * 180.02562 * 23 22 21 25 25 C 1.50700 * 120.00311 * 359.97438 * 23 22 21 26 26 C 1.52995 * 117.50205 * 248.75247 * 25 23 22 27 27 C 1.53002 * 117.49974 * 180.08876 * 25 23 22 28 28 C 1.46926 * 118.74364 * 306.39710 * 22 21 20 29 29 H 0.96995 * 120.00260 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47108 * 60.00149 * 9 7 2 31 31 H 1.08999 * 109.47329 * 299.99539 * 9 7 2 32 32 H 1.09005 * 109.46440 * 24.13222 * 11 10 9 33 33 H 1.08990 * 109.47068 * 144.12706 * 11 10 9 34 34 H 1.09004 * 115.55358 * 29.32588 * 12 11 10 35 35 H 1.08997 * 117.50458 * 359.97438 * 13 12 11 36 36 H 1.08998 * 117.49710 * 145.02360 * 13 12 11 37 37 H 1.09004 * 117.49902 * 214.97268 * 14 12 11 38 38 H 1.09004 * 117.50210 * 359.97438 * 14 12 11 39 39 H 1.08998 * 109.46520 * 301.33977 * 19 17 15 40 40 H 1.08995 * 109.46140 * 61.30040 * 19 17 15 41 41 H 1.09003 * 109.49404 * 58.58382 * 20 19 17 42 42 H 1.08996 * 109.50179 * 178.68075 * 20 19 17 43 43 H 1.08999 * 109.58540 * 174.42367 * 21 20 19 44 44 H 1.08999 * 109.58063 * 294.70539 * 21 20 19 45 45 H 1.08996 * 115.54509 * 34.42827 * 25 23 22 46 46 H 1.08999 * 117.50005 * 359.97438 * 26 25 23 47 47 H 1.09001 * 117.50044 * 145.02628 * 26 25 23 48 48 H 1.08998 * 117.49729 * 214.98498 * 27 25 23 49 49 H 1.09004 * 117.49804 * 359.97438 * 27 25 23 50 50 H 1.09011 * 109.58111 * 293.82217 * 28 22 21 51 51 H 1.08992 * 109.58787 * 173.40081 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.5948 -4.2429 -1.2615 12 6 1.7326 -5.4837 -1.5014 13 6 2.4406 -6.8396 -1.5378 14 6 1.9081 -6.2195 -2.8312 15 6 2.7184 -4.0574 1.1650 16 8 3.5811 -4.9098 1.1595 17 6 2.2228 -3.4955 2.4725 18 1 2.2186 -2.4066 2.4222 19 6 0.8032 -4.0006 2.7401 20 6 0.2865 -3.4044 4.0515 21 6 1.1871 -3.8592 5.2044 22 7 2.5771 -3.5050 4.8867 23 6 3.3171 -2.7843 5.7525 24 8 4.4633 -2.4978 5.4785 25 6 2.7199 -2.3333 7.0606 26 6 2.4671 -0.8355 7.2427 27 6 3.6102 -1.5167 7.9994 28 6 3.1452 -3.9513 3.6073 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5568 0.8903 32 1 2.4512 -3.5369 -2.0795 33 1 3.6442 -4.5334 -1.2124 34 1 0.7307 -5.4501 -1.0732 35 1 3.5206 -6.8475 -1.3914 36 1 1.9046 -7.6982 -1.1335 37 1 1.0218 -6.6704 -3.2778 38 1 2.6375 -5.8194 -3.5354 39 1 0.1498 -3.6985 1.9216 40 1 0.8127 -5.0880 2.8145 41 1 0.3002 -2.3164 3.9868 42 1 -0.7331 -3.7459 4.2297 43 1 0.8836 -3.3593 6.1242 44 1 1.1024 -4.9386 5.3301 45 1 2.0084 -3.0228 7.5149 46 1 2.7331 -0.1760 6.4166 47 1 1.5894 -0.5394 7.8173 48 1 3.4840 -1.6685 9.0713 49 1 4.6280 -1.3059 7.6711 50 1 3.2222 -5.0387 3.6013 51 1 4.1338 -3.5122 3.4735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089598083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:27 Heat of formation + Delta-G solvation = -24.222965 kcal Electronic energy + Delta-G solvation = -30460.372596 eV Core-core repulsion = 26554.127480 eV Total energy + Delta-G solvation = -3906.245115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.40253 -39.32245 -37.47671 -36.66710 -35.93631 -34.78467 -32.70710 -32.49915 -31.05469 -27.94235 -26.58711 -25.77357 -24.24285 -23.00340 -22.68298 -22.49304 -22.08800 -20.98788 -20.22168 -18.60640 -18.32590 -17.50323 -16.65325 -16.42590 -15.76653 -15.61177 -15.19170 -14.97561 -14.62049 -14.52897 -14.25010 -14.06303 -13.87939 -13.75220 -13.25833 -12.86672 -12.66719 -12.48081 -12.30039 -12.22924 -11.99616 -11.64645 -11.53593 -11.34998 -11.27114 -11.11831 -10.97328 -10.95934 -10.81726 -10.64691 -10.56705 -10.47463 -10.29872 -10.23791 -10.07905 -9.72582 -9.63721 -9.59109 -8.98045 -8.57934 -8.42070 -7.72929 -6.20934 -4.27694 2.59288 3.01903 3.24148 3.28086 3.31697 3.40519 3.81662 3.86148 4.16791 4.33110 4.46372 4.67480 4.80137 4.85903 4.99844 5.04979 5.07722 5.12289 5.16726 5.21018 5.26378 5.30748 5.44194 5.51069 5.52850 5.61238 5.74241 5.75971 5.81826 5.84157 5.88133 5.93454 6.01860 6.05232 6.12817 6.13459 6.19980 6.22788 6.30882 6.35617 6.42846 6.54907 6.61705 6.70879 6.80082 7.19336 7.52543 7.55127 7.75060 8.04218 8.31986 8.32591 8.77405 9.01812 9.40420 10.85378 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.004588 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.769332 B = 6101.686402 C = 8184.570096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.231 3.769 10 N -0.592 5.592 11 C 0.150 3.850 12 C -0.158 4.158 13 C -0.173 4.173 14 C -0.182 4.182 15 C 0.529 3.471 16 O -0.570 6.570 17 C -0.119 4.119 18 H 0.115 0.885 19 C -0.110 4.110 20 C -0.132 4.132 21 C 0.107 3.893 22 N -0.605 5.605 23 C 0.543 3.457 24 O -0.542 6.542 25 C -0.193 4.193 26 C -0.151 4.151 27 C -0.150 4.150 28 C 0.134 3.866 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.123 0.877 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 -7.799 9.542 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.078 0.922 9 C 0.112 3.888 10 N -0.322 5.322 11 C 0.026 3.974 12 C -0.178 4.178 13 C -0.210 4.210 14 C -0.219 4.219 15 C 0.317 3.683 16 O -0.451 6.451 17 C -0.140 4.140 18 H 0.133 0.867 19 C -0.148 4.148 20 C -0.170 4.170 21 C -0.016 4.016 22 N -0.337 5.337 23 C 0.331 3.669 24 O -0.419 6.419 25 C -0.214 4.214 26 C -0.189 4.189 27 C -0.188 4.188 28 C 0.012 3.988 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.141 0.859 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.125 0.875 50 H 0.092 0.908 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.594 -7.946 9.368 12.387 hybrid contribution 0.091 1.008 -0.205 1.032 sum -1.503 -6.938 9.164 11.592 Atomic orbital electron populations 1.69902 1.05907 1.27376 1.49724 1.24892 0.94831 0.99139 0.94661 0.86628 0.79664 0.82699 0.79000 1.20087 1.21093 1.20026 1.21478 0.93590 0.90552 1.52094 0.92249 1.19623 0.87724 0.82516 0.98983 1.48143 1.45221 1.34191 1.04611 1.20838 0.97459 0.92229 0.86836 1.22779 1.00898 0.93644 1.00464 1.22935 1.00667 0.96519 1.00855 1.22910 1.03136 1.04791 0.91096 1.20159 0.81282 0.81328 0.85543 1.90588 1.32361 1.34235 1.87943 1.21568 0.96017 1.04172 0.92286 0.86729 1.21555 0.95042 0.99854 0.98349 1.21898 0.98517 1.02306 0.94290 1.21809 0.80814 1.00275 0.98734 1.48003 1.13240 1.53763 1.18740 1.19634 0.85533 0.77260 0.84433 1.90691 1.17920 1.56242 1.77052 1.22202 1.05686 0.96684 0.96873 1.22956 1.00658 0.91942 1.03326 1.22955 0.97175 1.01624 0.97025 1.21373 0.97499 0.99659 0.80288 0.92498 0.94628 0.93539 0.90051 0.91075 0.88014 0.88746 0.89592 0.89217 0.88948 0.89652 0.92089 0.90591 0.90519 0.89698 0.91449 0.85897 0.88041 0.87812 0.88113 0.87482 0.90751 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.29 55.43 0.74 -23.16 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -13.85 8.76 -34.44 -0.30 -14.15 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.23 5.27 4.70 -5.19 -0.02 5.25 16 10 N -0.59 -12.16 2.48 -175.06 -0.43 -12.60 16 11 C 0.15 2.76 5.66 -4.04 -0.02 2.74 16 12 C -0.16 -2.51 5.97 -90.62 -0.54 -3.05 16 13 C -0.17 -2.46 10.18 -26.73 -0.27 -2.74 16 14 C -0.18 -2.38 10.25 -26.73 -0.27 -2.65 16 15 C 0.53 10.87 6.83 -10.99 -0.08 10.80 16 16 O -0.57 -12.65 15.52 5.56 0.09 -12.56 16 17 C -0.12 -2.17 1.84 -91.66 -0.17 -2.34 16 18 H 0.11 2.43 7.06 -51.93 -0.37 2.06 16 19 C -0.11 -1.68 4.84 -26.69 -0.13 -1.81 16 20 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 21 C 0.11 1.20 6.30 -3.71 -0.02 1.18 16 22 N -0.61 -9.07 2.97 -172.77 -0.51 -9.58 16 23 C 0.54 8.63 7.48 -10.99 -0.08 8.55 16 24 O -0.54 -10.78 15.67 5.55 0.09 -10.70 16 25 C -0.19 -2.22 4.96 -91.77 -0.45 -2.67 16 26 C -0.15 -1.59 10.24 -26.69 -0.27 -1.87 16 27 C -0.15 -1.58 10.05 -26.69 -0.27 -1.85 16 28 C 0.13 2.35 5.18 -3.71 -0.02 2.33 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.05 1.06 4.49 -51.93 -0.23 0.83 16 32 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 33 H 0.07 1.35 7.26 -51.93 -0.38 0.97 16 34 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.42 5.72 -51.93 -0.30 1.13 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.76 5.68 -51.93 -0.29 0.46 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.12 1.08 6.82 -51.93 -0.35 0.72 16 46 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.11 1.32 7.67 -51.93 -0.40 0.92 16 50 H 0.07 1.28 7.80 -51.92 -0.41 0.87 16 51 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -30.42 404.84 -10.68 -41.11 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.54 Total: 8.11 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.19 Total: -2.43 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.21 Total: -45.34 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.42 -10.68 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089598083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.886 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds