Wall clock time and date at job start Tue Mar 31 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48501 * 109.47048 * 244.99949 * 3 2 1 5 5 H 1.48490 * 109.47159 * 5.00235 * 3 2 1 6 6 H 1.48502 * 109.47079 * 125.00045 * 3 2 1 7 7 C 1.37883 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99722 * 174.36627 * 7 2 1 9 9 C 1.50697 * 120.00012 * 354.36628 * 7 2 1 10 10 N 1.46894 * 109.47275 * 182.68477 * 9 7 2 11 11 C 1.46901 * 111.00331 * 195.45983 * 10 9 7 12 12 C 1.50696 * 109.47280 * 66.04241 * 11 10 9 13 13 C 1.38673 * 120.42343 * 270.25729 * 12 11 10 14 14 C 1.38621 * 118.42215 * 180.24260 * 13 12 11 15 15 C 1.38231 * 119.16225 * 359.74583 * 14 13 12 16 16 N 1.31851 * 120.76176 * 0.02562 * 15 14 13 17 17 C 1.31887 * 121.72756 * 359.97438 * 16 15 14 18 18 C 1.46906 * 110.99975 * 71.50322 * 10 9 7 19 19 C 1.50697 * 109.46820 * 198.60468 * 18 10 9 20 20 C 1.36112 * 120.12724 * 254.60858 * 19 18 10 21 21 C 1.39320 * 121.06266 * 179.97438 * 20 19 18 22 22 C 1.36176 * 120.87062 * 0.02562 * 21 20 19 23 23 C 1.40384 * 119.61774 * 0.02562 * 22 21 20 24 24 C 1.40777 * 121.39150 * 180.02562 * 23 22 21 25 25 C 1.36584 * 118.14838 * 179.08941 * 24 23 22 26 26 C 1.39335 * 119.93798 * 0.88442 * 25 24 23 27 27 N 1.31083 * 121.75428 * 359.39227 * 26 25 24 28 28 C 1.33689 * 121.31808 * 0.02562 * 27 26 25 29 29 H 0.96997 * 119.99602 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47404 * 62.68513 * 9 7 2 31 31 H 1.09001 * 109.47516 * 302.68684 * 9 7 2 32 32 H 1.09006 * 109.47052 * 306.04585 * 11 10 9 33 33 H 1.09000 * 109.47314 * 186.04577 * 11 10 9 34 34 H 1.08001 * 120.78544 * 359.96531 * 13 12 11 35 35 H 1.08006 * 120.42173 * 179.73232 * 14 13 12 36 36 H 1.08000 * 119.61705 * 180.02562 * 15 14 13 37 37 H 1.07998 * 119.61528 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46832 * 318.60877 * 18 10 9 39 39 H 1.09003 * 109.46967 * 78.60972 * 18 10 9 40 40 H 1.07992 * 119.46783 * 0.02562 * 20 19 18 41 41 H 1.07993 * 119.56175 * 180.02562 * 21 20 19 42 42 H 1.08004 * 120.19094 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.91971 * 0.02562 * 24 23 22 44 44 H 1.08004 * 120.02596 * 180.27046 * 25 24 23 45 45 H 1.07996 * 119.12215 * 179.41102 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0091 1.7505 -1.2689 5 1 1.2889 2.7437 0.1221 6 1 3.1922 1.6449 1.1469 7 6 2.0046 -1.1941 -0.0005 8 1 3.0806 -1.1963 -0.0924 9 6 1.2565 -2.4961 0.1270 10 7 2.2141 -3.6094 0.1648 11 6 1.5405 -4.8918 -0.0793 12 6 1.0121 -4.9211 -1.4903 13 6 -0.2648 -4.4592 -1.7717 14 6 -0.7108 -4.5102 -3.0832 15 6 0.1282 -5.0112 -4.0609 16 7 1.3384 -5.4376 -3.7574 17 6 1.7957 -5.4042 -2.5209 18 6 2.9445 -3.6325 1.4392 19 6 4.1965 -4.4570 1.2856 20 6 4.2638 -5.7043 1.8265 21 6 5.4112 -6.4835 1.6959 22 6 6.4994 -6.0176 1.0226 23 6 6.4658 -4.7351 0.4527 24 6 7.5690 -4.2166 -0.2516 25 6 7.4575 -2.9686 -0.7953 26 6 6.2817 -2.2399 -0.6286 27 7 5.2585 -2.7234 0.0329 28 6 5.2979 -3.9426 0.5800 29 1 -0.4849 0.8401 0.0004 30 1 0.5911 -2.6181 -0.7277 31 1 0.6702 -2.4898 1.0459 32 1 0.7130 -5.0067 0.6210 33 1 2.2502 -5.7073 0.0600 34 1 -0.8984 -4.0732 -0.9869 35 1 -1.7013 -4.1630 -3.3379 36 1 -0.2116 -5.0539 -5.0852 37 1 2.7925 -5.7627 -2.3106 38 1 3.2121 -2.6147 1.7231 39 1 2.3131 -4.0712 2.2119 40 1 3.4137 -6.0964 2.3648 41 1 5.4381 -7.4701 2.1344 42 1 7.3831 -6.6312 0.9277 43 1 8.4727 -4.7957 -0.3717 44 1 8.2837 -2.5431 -1.3456 45 1 6.2114 -1.2506 -1.0559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089807975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:39 Heat of formation + Delta-G solvation = 102.116621 kcal Electronic energy + Delta-G solvation = -28260.518672 eV Core-core repulsion = 24628.946540 eV Total energy + Delta-G solvation = -3631.572132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.154 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61112 -39.74046 -37.38263 -36.31144 -33.49953 -32.64639 -31.94277 -31.19343 -30.31384 -30.03583 -27.27290 -26.15386 -24.16723 -23.74024 -23.29750 -23.08261 -21.86308 -20.88093 -19.76290 -18.02399 -16.70617 -16.64142 -16.60462 -16.24938 -15.72886 -15.16953 -14.68244 -14.59395 -14.35978 -14.15344 -14.00863 -13.57927 -13.42709 -13.25169 -13.02811 -12.78028 -12.59588 -12.47118 -12.31796 -11.90145 -11.57683 -11.54505 -11.33532 -11.09235 -10.86051 -10.77982 -10.59400 -10.37878 -10.17969 -9.79827 -9.30015 -9.17966 -9.01811 -8.89184 -8.55961 -8.51941 -8.28096 -7.91424 -7.21757 -5.92632 -3.88726 0.63862 1.06066 1.56290 1.75691 2.24173 3.16271 3.39890 3.43307 3.47274 4.20737 4.40087 4.53584 4.62540 4.73687 4.84586 4.93743 4.97656 5.05939 5.15141 5.22192 5.30599 5.31573 5.42538 5.43992 5.46728 5.49675 5.53275 5.67827 5.76614 5.81340 5.96756 6.10254 6.15085 6.16469 6.20901 6.24627 6.27343 6.53603 6.57551 6.59252 6.68406 6.77315 6.80369 7.10333 7.14147 7.31504 7.33251 7.99137 8.13687 8.22847 8.38484 8.39174 8.64353 9.25516 9.73749 11.18966 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.007582 B = 0.005677 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.199956 B = 4930.635036 C = 6989.570557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.189 3.811 10 N -0.513 5.513 11 C 0.092 3.908 12 C -0.108 4.108 13 C -0.056 4.056 14 C -0.174 4.174 15 C 0.085 3.915 16 N -0.493 5.493 17 C 0.113 3.887 18 C 0.106 3.894 19 C -0.027 4.027 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.113 4.113 23 C -0.104 4.104 24 C -0.073 4.073 25 C -0.173 4.173 26 C 0.120 3.880 27 N -0.420 5.420 28 C 0.143 3.857 29 H 0.258 0.742 30 H 0.038 0.962 31 H -0.012 1.012 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.104 0.896 39 H 0.028 0.972 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.163 -12.744 0.497 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.534 4.534 8 H 0.100 0.900 9 C 0.064 3.936 10 N -0.237 5.237 11 C -0.037 4.037 12 C -0.110 4.110 13 C -0.082 4.082 14 C -0.193 4.193 15 C -0.072 4.072 16 N -0.202 5.202 17 C -0.044 4.044 18 C -0.022 4.022 19 C -0.028 4.028 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.106 4.106 24 C -0.099 4.099 25 C -0.193 4.193 26 C -0.054 4.054 27 N -0.126 5.126 28 C 0.021 3.979 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.006 0.994 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.122 0.878 39 H 0.047 0.953 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.033 -12.425 -0.378 15.367 hybrid contribution 0.054 0.819 1.083 1.359 sum 9.088 -11.606 0.705 14.757 Atomic orbital electron populations 1.69960 1.06020 1.26488 1.52100 1.24965 0.94728 0.99071 0.96019 0.86633 0.79478 0.83162 0.78562 1.20452 1.21763 1.20290 1.21372 0.95118 0.89308 1.47639 0.89997 1.19882 0.90133 0.87576 0.95971 1.62086 1.28906 1.01673 1.30987 1.20985 0.96801 0.94692 0.91224 1.20740 0.94374 0.98519 0.97356 1.21550 0.95495 0.94205 0.96999 1.22042 1.01460 1.01818 0.94023 1.22579 0.89843 0.95484 0.99299 1.67617 1.14891 1.16337 1.21349 1.22438 0.98747 0.95817 0.87380 1.20880 0.90055 1.00557 0.90710 1.19854 0.94890 0.94004 0.94083 1.20793 0.98357 0.93875 1.01126 1.20800 0.93339 0.99680 0.99033 1.20836 0.98902 0.94563 0.98877 1.18872 0.95285 0.95915 1.00500 1.21321 0.97431 0.95625 0.95529 1.21902 0.99840 0.95946 1.01562 1.23057 0.88186 0.99741 0.94372 1.68291 1.26897 1.11488 1.05902 1.18746 0.92204 0.90550 0.96390 0.93256 0.94427 0.99446 0.94949 0.91107 0.84955 0.85294 0.83517 0.83644 0.87787 0.95348 0.85867 0.86103 0.85985 0.85153 0.85171 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.30 55.43 0.74 -25.98 16 2 C 0.05 1.48 5.45 -17.82 -0.10 1.38 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.50 -13.72 8.30 -34.44 -0.29 -14.01 16 8 H 0.08 2.27 7.37 -52.49 -0.39 1.89 16 9 C 0.19 4.74 4.57 -4.98 -0.02 4.72 16 10 N -0.51 -10.66 4.37 -238.96 -1.04 -11.70 16 11 C 0.09 1.62 4.97 -4.98 -0.02 1.59 16 12 C -0.11 -1.94 4.95 -104.48 -0.52 -2.46 16 13 C -0.06 -0.99 8.01 -39.28 -0.31 -1.31 16 14 C -0.17 -2.76 10.11 -39.44 -0.40 -3.16 16 15 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 16 N -0.49 -8.82 10.36 -13.25 -0.14 -8.96 16 17 C 0.11 2.02 10.86 -17.55 -0.19 1.83 16 18 C 0.11 2.01 4.58 -4.97 -0.02 1.99 16 19 C -0.03 -0.45 4.79 -104.51 -0.50 -0.95 16 20 C -0.12 -1.62 8.88 -39.94 -0.35 -1.97 16 21 C -0.11 -1.27 9.95 -39.92 -0.40 -1.67 16 22 C -0.11 -1.33 9.78 -39.52 -0.39 -1.72 16 23 C -0.10 -1.48 5.74 -106.80 -0.61 -2.10 16 24 C -0.07 -0.89 9.90 -39.22 -0.39 -1.27 16 25 C -0.17 -2.13 10.03 -39.77 -0.40 -2.53 16 26 C 0.12 1.87 11.15 -17.46 -0.19 1.68 16 27 N -0.42 -7.95 9.34 -10.97 -0.10 -8.05 16 28 C 0.14 2.48 6.59 -84.85 -0.56 1.92 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.04 1.00 5.16 -51.93 -0.27 0.74 16 31 H -0.01 -0.33 8.06 -51.93 -0.42 -0.75 16 32 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.07 1.12 6.78 -51.93 -0.35 0.77 16 34 H 0.13 2.35 7.75 -52.49 -0.41 1.94 16 35 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.15 2.44 8.06 -52.49 -0.42 2.01 16 38 H 0.10 2.28 6.95 -51.93 -0.36 1.92 16 39 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 40 H 0.12 1.42 7.95 -52.49 -0.42 1.00 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 45 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -32.74 376.68 -11.71 -44.45 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.95 Total: 4.42 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -5.86 Total: -16.88 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.55 Total: -54.69 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.74 -11.71 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089807975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.566 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds