Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38319 * 119.97285 * 2 1 4 4 C 1.38248 * 120.15919 * 179.97438 * 3 2 1 5 5 C 1.38161 * 120.09228 * 0.23600 * 4 3 2 6 6 C 1.38838 * 119.93675 * 359.48627 * 5 4 3 7 7 N 1.39753 * 120.07714 * 180.25446 * 6 5 4 8 8 C 1.46495 * 120.00094 * 0.27827 * 7 6 5 9 9 C 1.50695 * 109.47457 * 179.97438 * 8 7 6 10 10 O 1.21285 * 120.00039 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00023 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47268 * 89.99883 * 12 11 9 14 14 H 1.07997 * 120.00242 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00307 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99595 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00241 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47367 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47105 * 120.00530 * 17 15 13 20 20 H 1.48499 * 109.47032 * 240.00336 * 17 15 13 21 21 C 1.46497 * 119.99518 * 0.02562 * 11 9 8 22 22 C 1.53003 * 109.47238 * 90.00401 * 21 11 9 23 23 C 1.47197 * 109.47320 * 179.97438 * 22 21 11 24 24 N 9.18048 * 170.24685 * 111.57980 * 2 1 3 25 25 C 1.38162 * 119.96876 * 179.97438 * 2 1 3 26 26 Cl 1.73601 * 120.04801 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.46617 * 89.99860 * 1 2 3 28 28 H 1.08997 * 109.47677 * 210.00075 * 1 2 3 29 29 H 1.09003 * 109.47049 * 330.00953 * 1 2 3 30 30 H 1.08006 * 119.91954 * 359.97103 * 3 2 1 31 31 H 1.08002 * 119.95055 * 179.97438 * 4 3 2 32 32 H 1.07997 * 120.02998 * 179.74681 * 5 4 3 33 33 H 0.96998 * 120.00102 * 180.27448 * 7 6 5 34 34 H 1.09005 * 109.47053 * 300.00308 * 8 7 6 35 35 H 1.09004 * 109.47224 * 59.99916 * 8 7 6 36 36 H 1.09007 * 109.46899 * 209.99759 * 12 11 9 37 37 H 1.08990 * 109.47271 * 329.99622 * 12 11 9 38 38 H 0.97002 * 119.99818 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47192 * 209.99875 * 21 11 9 40 40 H 1.09000 * 109.47398 * 329.99858 * 21 11 9 41 41 H 1.09002 * 109.46820 * 299.99341 * 22 21 11 42 42 H 1.08996 * 109.46934 * 59.99598 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1982 0.0000 4 6 3.5805 1.2027 0.0005 5 6 4.2771 0.0096 -0.0039 6 6 3.5875 -1.1954 0.0020 7 7 4.2892 -2.4040 0.0029 8 6 5.7541 -2.4005 0.0039 9 6 6.2600 -3.8200 0.0055 10 8 5.4741 -4.7438 0.0052 11 7 7.5856 -4.0631 0.0071 12 6 8.0773 -5.4431 0.0080 13 6 8.2475 -5.9167 -1.4124 14 1 8.0134 -5.2557 -2.2337 15 6 8.7032 -7.1935 -1.6635 16 7 8.9889 -7.9983 -0.6633 17 14 8.9136 -7.7808 -3.4242 18 1 8.5266 -6.6932 -4.3584 19 1 10.3330 -8.1506 -3.6565 20 1 8.0490 -8.9653 -3.6576 21 6 8.5348 -2.9472 0.0080 22 6 8.8637 -2.5584 1.4508 23 6 9.8179 -1.4376 1.4516 24 7 10.5548 -0.5720 1.4462 25 6 2.1971 -1.1969 0.0005 26 17 1.3296 -2.7006 0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 1.6562 2.1325 -0.0005 31 1 4.1166 2.1402 0.0001 32 1 5.3570 0.0143 -0.0076 33 1 3.8063 -3.2452 0.0030 34 1 6.1168 -1.8860 -0.8860 35 1 6.1156 -1.8854 0.8940 36 1 9.0370 -5.4865 0.5230 37 1 7.3603 -6.0838 0.5212 38 1 9.3091 -8.8967 -0.8400 39 1 9.4488 -3.2473 -0.5047 40 1 8.0930 -2.0939 -0.5066 41 1 7.9498 -2.2583 1.9634 42 1 9.3055 -3.4117 1.9653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095414062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = 7.056593 kcal Electronic energy + Delta-G solvation = -25597.501098 eV Core-core repulsion = 21796.229431 eV Total energy + Delta-G solvation = -3801.271667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.02241 -39.26558 -36.98613 -36.40122 -35.83670 -35.25399 -32.98497 -32.33054 -30.97156 -30.37886 -27.94174 -27.06443 -26.05973 -24.14304 -22.86369 -22.52597 -20.85046 -18.93461 -17.92783 -17.47115 -16.78082 -16.56264 -16.34195 -15.65620 -15.45433 -15.29654 -14.79051 -14.47446 -14.35711 -14.19418 -13.88228 -13.78607 -13.49641 -13.17947 -12.88880 -12.56704 -12.52808 -12.49682 -12.31448 -12.12526 -11.84236 -11.79770 -11.51192 -11.41510 -11.36670 -11.07090 -10.95694 -10.73602 -10.70879 -10.27529 -10.17132 -9.78867 -9.29152 -8.74146 -8.54572 -8.02373 -7.51521 -6.16248 -4.21243 1.11468 1.40053 2.20371 2.64049 2.74407 3.03176 3.12942 3.23886 3.32563 3.36033 3.59877 3.63683 4.08515 4.35655 4.58350 4.74625 4.76030 4.89489 5.00795 5.11536 5.14809 5.16165 5.19264 5.20098 5.26452 5.43049 5.43818 5.51832 5.59686 5.71662 5.87443 5.96270 6.00513 6.22776 6.41223 6.58684 6.76609 7.10801 7.21315 7.30492 7.50854 7.66364 7.79306 8.05977 8.08591 8.63121 8.84497 9.44769 10.91973 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.003258 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.182440 B = 8592.956018 C =10603.423728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 C -0.178 4.178 4 C -0.061 4.061 5 C -0.201 4.201 6 C 0.240 3.760 7 N -0.725 5.725 8 C 0.098 3.902 9 C 0.502 3.498 10 O -0.526 6.526 11 N -0.591 5.591 12 C 0.245 3.755 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.114 3.886 22 C -0.051 4.051 23 C 0.216 3.784 24 N -0.442 5.442 25 C -0.119 4.119 26 Cl -0.069 7.069 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 17.304 3.697 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.080 4.080 5 C -0.224 4.224 6 C 0.133 3.867 7 N -0.357 5.357 8 C -0.030 4.030 9 C 0.288 3.712 10 O -0.402 6.402 11 N -0.322 5.322 12 C 0.126 3.874 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.012 4.012 22 C -0.092 4.092 23 C -0.102 4.102 24 N -0.120 5.120 25 C -0.150 4.150 26 Cl -0.040 7.040 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.257 0.743 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.262 17.702 3.730 20.799 hybrid contribution -0.146 -1.208 -0.966 1.554 sum -10.408 16.494 2.764 19.699 Atomic orbital electron populations 1.20877 0.90648 1.03280 1.02834 1.19501 0.96176 0.90956 0.96309 1.20686 0.94081 0.96649 1.08431 1.20939 0.94038 0.97420 0.95561 1.20603 0.99895 0.90406 1.11471 1.17506 0.89051 0.87037 0.93073 1.44640 1.04654 1.06314 1.80079 1.21281 0.81918 0.96730 1.03038 1.20161 0.83287 0.89975 0.77795 1.90707 1.54675 1.45504 1.49316 1.48170 1.03856 1.09078 1.71100 1.19412 0.95286 0.74809 0.97887 1.21425 1.44618 0.98764 0.92169 0.92261 1.24916 0.95154 0.96398 0.97465 1.69924 1.44717 1.07742 1.30699 0.86451 0.77666 0.78886 0.84485 1.19768 1.20927 1.20839 1.21376 0.96162 0.90410 0.93283 1.19889 0.95739 0.92249 1.01360 1.29083 0.93893 0.94054 0.93215 1.81256 1.10537 1.11663 1.08496 1.20213 0.90097 0.87378 1.17348 1.98345 1.76212 1.32066 1.97361 0.90684 0.90860 0.91194 0.85812 0.85694 0.85316 0.74324 0.89309 0.89514 0.94431 0.93430 0.92635 0.88339 0.90521 0.87552 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.61 36.00 0.35 -0.64 16 2 C -0.03 -0.29 5.88 -104.62 -0.62 -0.91 16 3 C -0.18 -1.64 9.70 -39.55 -0.38 -2.03 16 4 C -0.06 -0.55 10.04 -39.61 -0.40 -0.95 16 5 C -0.20 -2.10 9.31 -39.39 -0.37 -2.46 16 6 C 0.24 3.01 6.65 -83.73 -0.56 2.45 16 7 N -0.72 -10.00 5.66 -59.77 -0.34 -10.34 16 8 C 0.10 1.22 3.95 -5.20 -0.02 1.20 16 9 C 0.50 8.66 7.74 -10.99 -0.09 8.58 16 10 O -0.53 -11.56 15.25 5.55 0.08 -11.48 16 11 N -0.59 -10.03 2.46 -175.07 -0.43 -10.46 16 12 C 0.24 5.53 5.16 -5.20 -0.03 5.51 16 13 C -0.53 -13.75 9.39 -34.44 -0.32 -14.08 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.11 1.36 5.17 -4.04 -0.02 1.34 16 22 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 23 C 0.22 2.39 15.44 -20.73 -0.32 2.07 16 24 N -0.44 -6.12 18.54 42.19 0.78 -5.34 16 25 C -0.12 -1.47 6.33 -39.31 -0.25 -1.72 16 26 Cl -0.07 -0.87 25.93 -51.86 -1.34 -2.22 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.63 6.90 -51.93 -0.36 0.27 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.12 6.73 -52.49 -0.35 0.77 16 33 H 0.42 6.57 6.11 -40.82 -0.25 6.32 16 34 H 0.09 0.96 7.20 -51.93 -0.37 0.59 16 35 H 0.09 0.82 7.00 -51.93 -0.36 0.46 16 36 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 41 H 0.11 0.77 7.22 -51.93 -0.37 0.40 16 42 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -32.10 375.61 -8.45 -40.55 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.29 Total: 2.65 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -3.29 Total: -0.70 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.75 Total: -50.35 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.34 Total: -2.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.10 -8.45 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.606 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds