Wall clock time and date at job start Tue Mar 31 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86796 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47115 * 274.66772 * 3 2 1 5 5 H 1.48501 * 109.47230 * 34.66399 * 3 2 1 6 6 H 1.48496 * 109.47075 * 154.66510 * 3 2 1 7 7 C 1.40229 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99747 * 162.19976 * 7 2 1 9 9 C 1.41104 * 119.99979 * 342.19844 * 7 2 1 10 10 C 1.40893 * 120.10203 * 155.06377 * 9 7 2 11 11 C 1.36318 * 119.88939 * 180.02562 * 10 9 7 12 12 C 1.40016 * 120.11125 * 0.02562 * 11 10 9 13 13 C 1.47640 * 119.89775 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00099 * 180.27158 * 13 12 11 16 16 C 1.46495 * 120.00042 * 179.72152 * 15 13 12 17 17 C 1.53000 * 109.46948 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47164 * 180.02562 * 17 16 15 19 19 C 1.33996 * 124.92418 * 89.71678 * 18 17 16 20 20 C 1.46789 * 106.18584 * 179.89914 * 19 18 17 21 21 C 1.39411 * 134.37046 * 180.11226 * 20 19 18 22 22 C 1.36733 * 119.71678 * 180.26747 * 21 20 19 23 23 C 1.38741 * 120.41436 * 0.02562 * 22 21 20 24 24 C 1.37846 * 120.68948 * 359.97438 * 23 22 21 25 25 C 1.38941 * 119.81509 * 0.02562 * 24 23 22 26 26 O 1.34445 * 124.92488 * 270.02654 * 18 17 16 27 27 C 1.40015 * 120.20331 * 0.22912 * 12 11 10 28 28 C 1.36318 * 120.10820 * 359.48671 * 27 12 11 29 29 H 0.97001 * 120.00301 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.05391 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.94573 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99536 * 359.72856 * 15 13 12 33 33 H 1.09004 * 109.47365 * 300.00278 * 16 15 13 34 34 H 1.08999 * 109.47410 * 60.00466 * 16 15 13 35 35 H 1.09003 * 109.47373 * 299.99786 * 17 16 15 36 36 H 1.08999 * 109.47507 * 60.00102 * 17 16 15 37 37 H 1.08001 * 126.90710 * 0.02562 * 19 18 17 38 38 H 1.08007 * 120.13681 * 0.29638 * 21 20 19 39 39 H 1.07996 * 119.79066 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.65286 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.09187 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.94099 * 179.72270 * 27 12 11 43 43 H 1.07998 * 120.05170 * 180.23612 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3893 2.1033 -1.3954 5 1 1.4907 2.6222 0.7963 6 1 3.5838 1.4137 0.5991 7 6 2.0076 -1.2144 -0.0005 8 1 3.0488 -1.2367 -0.2865 9 6 1.3527 -2.4073 0.3725 10 6 1.8230 -3.6489 -0.0992 11 6 1.1867 -4.7986 0.2635 12 6 0.0672 -4.7471 1.1029 13 6 -0.6187 -5.9951 1.4924 14 8 -0.2115 -7.0655 1.0838 15 7 -1.6996 -5.9475 2.2958 16 6 -2.3839 -7.1855 2.6773 17 6 -3.5694 -6.8537 3.5857 18 6 -4.2730 -8.1272 3.9787 19 6 -3.9770 -8.8659 5.0567 20 6 -4.9083 -10.0004 5.0436 21 6 -5.1153 -11.1014 5.8735 22 6 -6.0938 -12.0062 5.5676 23 6 -6.8802 -11.8352 4.4375 24 6 -6.6901 -10.7529 3.6053 25 6 -5.7012 -9.8217 3.8979 26 8 -5.2847 -8.6901 3.2951 27 6 -0.4069 -3.5152 1.5699 28 6 0.2262 -2.3606 1.2173 29 1 -0.4850 0.8400 0.0004 30 1 2.6861 -3.6896 -0.7471 31 1 1.5466 -5.7508 -0.0972 32 1 -2.0246 -5.0936 2.6214 33 1 -2.7434 -7.6927 1.7819 34 1 -1.6891 -7.8356 3.2090 35 1 -3.2103 -6.3464 4.4812 36 1 -4.2641 -6.2037 3.0538 37 1 -3.2090 -8.6656 5.7893 38 1 -4.5057 -11.2387 6.7544 39 1 -6.2549 -12.8597 6.2094 40 1 -7.6493 -12.5576 4.2074 41 1 -7.3075 -10.6294 2.7278 42 1 -1.2734 -3.4800 2.2136 43 1 -0.1380 -1.4112 1.5811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095442983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:17 Heat of formation + Delta-G solvation = -0.789659 kcal Electronic energy + Delta-G solvation = -25835.260469 eV Core-core repulsion = 22003.788662 eV Total energy + Delta-G solvation = -3831.471808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70065 -39.15306 -38.19043 -37.19093 -35.32828 -33.89403 -33.21226 -31.68553 -30.68618 -30.14867 -29.46781 -28.12822 -25.97617 -23.99848 -23.01864 -21.99578 -21.74261 -21.16846 -20.86980 -19.65559 -17.61623 -17.55475 -17.15156 -16.87867 -16.34788 -15.85607 -15.46959 -15.21447 -15.14627 -14.40252 -14.08059 -14.00065 -13.84179 -13.54798 -13.35114 -13.20942 -12.81998 -12.67498 -12.59076 -12.24211 -12.20460 -12.02860 -11.92679 -11.56418 -11.36745 -11.27276 -11.17547 -10.98899 -10.65930 -10.34822 -10.08764 -9.58625 -9.37343 -9.03696 -8.89452 -8.68084 -8.39665 -7.74623 -7.56754 -7.06218 -4.62646 0.62327 1.08461 2.07475 2.20399 2.41578 2.88642 2.93079 2.99303 3.01389 3.44009 3.67321 3.71960 3.84147 4.20059 4.40326 4.53868 4.63615 4.76961 4.78450 4.84518 4.95569 5.00847 5.15578 5.29892 5.42381 5.54345 5.58080 5.76724 5.80372 5.94017 5.97214 6.00963 6.11532 6.14340 6.17847 6.29781 6.39711 6.74479 6.80374 6.84998 6.94759 7.01792 7.10785 7.41089 7.62060 7.75670 7.83560 8.04674 8.18032 8.37311 8.60648 8.72760 9.02946 9.85900 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.001696 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.322015 B =16509.860847 C =16938.317290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.238 4.238 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.573 3.427 14 O -0.574 6.574 15 N -0.743 5.743 16 C 0.128 3.872 17 C -0.059 4.059 18 C 0.049 3.951 19 C -0.205 4.205 20 C -0.128 4.128 21 C -0.072 4.072 22 C -0.138 4.138 23 C -0.097 4.097 24 C -0.106 4.106 25 C 0.051 3.949 26 O -0.190 6.190 27 C -0.062 4.062 28 C -0.178 4.178 29 H 0.287 0.713 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.089 0.911 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 -12.675 11.088 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.041 4.041 12 C -0.290 4.290 13 C 0.368 3.632 14 O -0.456 6.456 15 N -0.397 5.397 16 C 0.004 3.996 17 C -0.097 4.097 18 C 0.001 3.999 19 C -0.224 4.224 20 C -0.129 4.129 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.116 4.116 24 C -0.124 4.124 25 C 0.004 3.996 26 O -0.092 6.092 27 C -0.082 4.082 28 C -0.197 4.197 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.177 0.823 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.107 0.893 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.668 -13.176 10.538 21.098 hybrid contribution 0.074 1.141 0.232 1.167 sum -12.593 -12.035 10.769 20.480 Atomic orbital electron populations 1.69743 1.07927 1.30066 1.31732 1.26104 0.94811 1.01906 0.91864 0.86210 0.80854 0.79910 0.79406 1.19223 1.19731 1.18070 1.19853 0.98421 0.91183 1.37501 0.89689 1.17796 0.90379 0.92185 0.87143 1.20720 1.04650 0.92651 1.07767 1.20369 0.92929 0.97172 0.93617 1.18873 1.04553 0.90926 1.14599 1.18590 0.78518 0.89690 0.76439 1.90645 1.66627 1.31819 1.56463 1.45852 1.31820 1.08714 1.53339 1.21104 0.92338 0.88150 0.98029 1.20481 0.96245 0.90924 1.02010 1.22070 0.89298 0.96485 0.92098 1.22277 1.03272 0.95542 1.01292 1.19976 0.98295 0.97580 0.97064 1.20307 0.97689 0.92425 0.98609 1.20778 0.96729 0.99925 0.98142 1.20922 0.99621 0.96672 0.94337 1.19974 0.97451 0.93223 1.01792 1.19646 0.98351 0.88219 0.93373 1.83975 1.44196 1.33088 1.47921 1.20464 0.97295 0.92562 0.97838 1.20967 0.99872 0.96910 1.01988 0.90221 0.88357 0.88095 0.76627 0.91540 0.91387 0.87614 0.88780 0.82258 0.85516 0.85392 0.84825 0.85029 0.89300 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.23 10.97 55.56 0.61 -17.62 16 2 C 0.07 1.71 5.13 -17.31 -0.09 1.62 16 3 Si 0.91 17.02 29.60 -169.99 -5.03 11.99 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.44 -10.87 9.04 -37.75 -0.34 -11.22 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.23 5.57 -106.80 -0.60 2.64 16 10 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 11 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 12 C -0.28 -6.42 5.89 -104.73 -0.62 -7.04 16 13 C 0.57 12.04 7.76 -12.42 -0.10 11.94 16 14 O -0.57 -13.72 16.32 5.29 0.09 -13.63 16 15 N -0.74 -11.87 5.50 -61.32 -0.34 -12.21 16 16 C 0.13 1.74 5.66 -4.04 -0.02 1.72 16 17 C -0.06 -0.59 5.83 -27.88 -0.16 -0.75 16 18 C 0.05 0.56 6.49 -35.80 -0.23 0.32 16 19 C -0.20 -2.22 11.01 -37.62 -0.41 -2.63 16 20 C -0.13 -1.46 6.40 -105.16 -0.67 -2.13 16 21 C -0.07 -0.66 10.05 -39.69 -0.40 -1.06 16 22 C -0.14 -1.06 9.98 -39.94 -0.40 -1.46 16 23 C -0.10 -0.75 10.01 -39.54 -0.40 -1.14 16 24 C -0.11 -1.01 10.07 -39.46 -0.40 -1.41 16 25 C 0.05 0.62 7.42 -38.48 -0.29 0.33 16 26 O -0.19 -2.46 10.58 3.91 0.04 -2.42 16 27 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 28 C -0.18 -4.28 8.63 -39.27 -0.34 -4.62 16 29 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 30 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 32 H 0.40 5.44 6.47 -40.82 -0.26 5.18 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.09 1.59 6.37 -52.49 -0.33 1.25 16 43 H 0.12 2.91 6.17 -52.49 -0.32 2.58 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -30.22 371.73 -10.72 -40.94 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.10 Total: 10.95 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -6.59 Total: -23.60 kcal Atomic # 7 Polarization: -30.11 SS G_CDS: 0.27 Total: -29.83 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.13 Total: -16.05 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.22 -10.72 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.153 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds