Wall clock time and date at job start Tue Mar 31 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 120.00015 * 2 1 4 4 H 1.07996 * 119.99882 * 203.04259 * 3 2 1 5 5 C 1.38804 * 119.99864 * 23.05206 * 3 2 1 6 6 N 1.31613 * 120.00625 * 12.94894 * 5 3 2 7 7 Si 1.86805 * 119.99760 * 192.95482 * 5 3 2 8 8 H 1.48498 * 109.47264 * 89.99940 * 7 5 3 9 9 H 1.48504 * 109.47121 * 209.99567 * 7 5 3 10 10 H 1.48503 * 109.47038 * 329.99551 * 7 5 3 11 11 C 1.46496 * 119.99964 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47217 * 89.99583 * 11 2 1 13 13 O 1.21455 * 120.00318 * 359.97438 * 12 11 2 14 14 C 1.41289 * 120.00116 * 180.27833 * 12 11 2 15 15 C 1.47492 * 126.92514 * 359.74806 * 14 12 11 16 16 C 1.39321 * 133.67739 * 0.02562 * 15 14 12 17 17 C 1.37772 * 119.69777 * 179.97438 * 16 15 14 18 18 C 1.38722 * 120.26654 * 359.97438 * 17 16 15 19 19 C 1.37789 * 120.63817 * 0.02562 * 18 17 16 20 20 C 1.39157 * 119.98592 * 359.95495 * 19 18 17 21 21 N 1.38092 * 132.70786 * 180.02562 * 20 19 18 22 22 H 0.97000 * 124.72669 * 0.02562 * 21 20 19 23 23 C 1.36179 * 110.53293 * 179.75264 * 21 20 19 24 24 C 1.47549 * 125.44139 * 180.28393 * 23 21 20 25 25 C 1.39720 * 120.15728 * 134.87611 * 24 23 21 26 26 C 1.37919 * 119.83514 * 179.76750 * 25 24 23 27 27 C 1.38382 * 120.15762 * 0.50975 * 26 25 24 28 28 C 1.38382 * 120.32503 * 359.74108 * 27 26 25 29 29 C 1.37921 * 120.15828 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.46473 * 275.12127 * 1 2 3 31 31 H 1.09002 * 109.46857 * 35.11495 * 1 2 3 32 32 H 1.08993 * 109.47117 * 155.11609 * 1 2 3 33 33 H 0.97001 * 120.00387 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.47167 * 330.00084 * 11 2 1 35 35 H 1.08999 * 109.47631 * 209.99509 * 11 2 1 36 36 H 1.08002 * 120.14807 * 359.97438 * 16 15 14 37 37 H 1.08005 * 119.86564 * 179.97438 * 17 16 15 38 38 H 1.08007 * 119.67977 * 180.02562 * 18 17 16 39 39 H 1.08005 * 120.00349 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.07720 * 0.02562 * 25 24 23 41 41 H 1.08000 * 119.91821 * 180.25743 * 26 25 24 42 42 H 1.08010 * 119.83489 * 179.72490 * 27 26 25 43 43 H 1.07999 * 119.91991 * 180.02562 * 28 27 26 44 44 H 1.07999 * 120.08360 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3400 0.4707 6 7 0.4122 2.2597 1.1464 7 14 2.3156 4.0074 0.1450 8 1 1.7979 4.5531 -1.1353 9 1 1.9759 4.9365 1.2525 10 1 3.7906 3.8579 0.0591 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7032 -1.4216 13 8 2.0535 -1.0196 -2.3445 14 6 3.1380 -2.9090 -1.6803 15 6 3.6801 -3.8512 -0.6834 16 6 3.6967 -3.8740 0.7095 17 6 4.2990 -4.9238 1.3678 18 6 4.8865 -5.9549 0.6494 19 6 4.8772 -5.9449 -0.7284 20 6 4.2737 -4.8939 -1.4122 21 7 4.1131 -4.6205 -2.7563 22 1 4.4336 -5.1849 -3.4771 23 6 3.4370 -3.4510 -2.9283 24 6 3.0813 -2.8517 -4.2289 25 6 1.7974 -2.3424 -4.4394 26 6 1.4736 -1.7793 -5.6561 27 6 2.4135 -1.7276 -6.6704 28 6 3.6855 -2.2348 -6.4708 29 6 4.0250 -2.7965 -5.2578 30 1 -0.3632 0.0917 1.0236 31 1 -0.3633 0.8407 -0.5911 32 1 -0.3633 -0.9322 -0.4324 33 1 -0.0149 3.0662 1.4750 34 1 1.6084 -2.0286 0.5129 35 1 3.1500 -1.1387 0.5132 36 1 3.2396 -3.0724 1.2706 37 1 4.3139 -4.9440 2.4476 38 1 5.3557 -6.7734 1.1752 39 1 5.3380 -6.7528 -1.2775 40 1 1.0617 -2.3858 -3.6499 41 1 0.4828 -1.3814 -5.8188 42 1 2.1529 -1.2895 -7.6226 43 1 4.4140 -2.1907 -7.2668 44 1 5.0182 -3.1915 -5.1032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095947876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:15 Heat of formation + Delta-G solvation = 82.480549 kcal Electronic energy + Delta-G solvation = -28072.067463 eV Core-core repulsion = 24341.925185 eV Total energy + Delta-G solvation = -3730.142278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47964 -38.98510 -38.16027 -36.85335 -34.89872 -32.37096 -31.74615 -31.06012 -30.85295 -29.49240 -28.30679 -27.21823 -25.68013 -23.81801 -23.03546 -22.60924 -21.91344 -21.13266 -20.44277 -18.64908 -17.69402 -16.90895 -16.61550 -16.17470 -15.73948 -15.19642 -15.06326 -14.59924 -14.47668 -14.24712 -14.15102 -13.82733 -13.81296 -13.58044 -13.38495 -12.99392 -12.84966 -12.61699 -12.50104 -11.78416 -11.72345 -11.62891 -11.28448 -11.09982 -10.97731 -10.85654 -10.72308 -10.56122 -10.26922 -9.87136 -9.77116 -9.66452 -9.21678 -9.01750 -8.68727 -8.35192 -8.14615 -7.57361 -6.60698 -5.60169 -3.05550 0.61551 1.36332 1.47064 1.53737 2.09544 2.84711 3.47946 3.53716 3.55498 3.57743 3.82385 4.03475 4.44121 4.59265 4.66492 4.85766 4.87794 4.94593 5.01936 5.09532 5.14683 5.35194 5.41082 5.48231 5.49871 5.57102 5.66877 5.73000 5.80545 5.88738 6.01366 6.04791 6.26539 6.32870 6.35440 6.44483 6.45548 6.53502 6.55702 6.60082 6.71319 6.83869 6.87813 6.95337 7.07410 7.30629 7.52273 7.82645 7.93586 8.46095 8.65648 9.35315 9.97283 10.46044 11.44903 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.008445 B = 0.004724 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.846695 B = 5925.705166 C = 8438.531350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.584 5.584 3 C -0.242 4.242 4 H 0.064 0.936 5 C 0.002 3.998 6 N -0.909 5.909 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.114 3.886 12 C 0.377 3.623 13 O -0.446 6.446 14 C -0.232 4.232 15 C -0.065 4.065 16 C -0.074 4.074 17 C -0.138 4.138 18 C -0.104 4.104 19 C -0.128 4.128 20 C 0.087 3.913 21 N -0.577 5.577 22 H 0.415 0.585 23 C 0.195 3.805 24 C -0.052 4.052 25 C -0.033 4.033 26 C -0.124 4.124 27 C -0.104 4.104 28 C -0.133 4.133 29 C -0.103 4.103 30 H 0.032 0.968 31 H 0.041 0.959 32 H -0.006 1.006 33 H 0.251 0.749 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.517 -18.855 -9.477 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.305 5.305 3 C -0.372 4.372 4 H 0.082 0.918 5 C -0.196 4.196 6 N -0.555 5.555 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C -0.015 4.015 12 C 0.253 3.747 13 O -0.322 6.322 14 C -0.241 4.241 15 C -0.069 4.069 16 C -0.093 4.093 17 C -0.157 4.157 18 C -0.123 4.123 19 C -0.148 4.148 20 C -0.018 4.018 21 N -0.178 5.178 22 H 0.252 0.748 23 C 0.082 3.918 24 C -0.053 4.053 25 C -0.052 4.052 26 C -0.142 4.142 27 C -0.123 4.123 28 C -0.151 4.151 29 C -0.121 4.121 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.227 -18.399 -9.921 22.117 hybrid contribution 0.761 0.622 -0.510 1.107 sum 7.988 -17.778 -10.430 22.105 Atomic orbital electron populations 1.20771 0.82341 0.95468 0.99147 1.43588 1.01823 0.99952 1.85155 1.19121 0.98045 0.85632 1.34380 0.91825 1.24935 0.97917 0.98296 0.98413 1.70066 1.19545 1.26976 1.38919 0.86269 0.78753 0.84309 0.77319 1.21579 1.21828 1.20567 1.21106 0.97889 0.90057 0.92438 1.22051 0.75659 0.82171 0.94777 1.90511 1.41927 1.52916 1.46877 1.20509 1.12725 1.00923 0.89978 1.18972 1.00592 0.94217 0.93128 1.20863 0.98004 0.98550 0.91854 1.20978 1.00151 0.94609 0.99938 1.20780 0.99985 0.98874 0.92704 1.20005 1.03345 0.97236 0.94221 1.18205 1.03041 0.97972 0.82582 1.41660 1.49436 1.20305 1.06425 0.74770 1.19413 0.93078 0.85733 0.93580 1.18010 0.95029 1.02329 0.89967 1.21258 0.95058 0.92622 0.96257 1.21106 1.00112 0.99808 0.93148 1.21277 0.93515 0.98398 0.99079 1.20925 0.96838 1.00264 0.97052 1.21130 0.98177 0.99920 0.92917 0.94986 0.94024 0.98732 0.93904 0.91509 0.90479 0.84678 0.85639 0.85786 0.86404 0.84986 0.85541 0.86031 0.85986 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.37 8.98 59.85 0.54 4.90 16 2 N -0.58 -15.50 2.41 -182.51 -0.44 -15.94 16 3 C -0.24 -7.03 9.65 -15.06 -0.15 -7.17 16 4 H 0.06 1.86 7.86 -52.49 -0.41 1.44 16 5 C 0.00 0.06 5.10 -17.44 -0.09 -0.03 16 6 N -0.91 -27.36 10.71 55.49 0.59 -26.76 16 7 Si 0.90 23.00 29.57 -169.99 -5.03 17.98 16 8 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.11 2.46 4.32 -5.20 -0.02 2.43 16 12 C 0.38 7.79 6.88 -33.15 -0.23 7.56 16 13 O -0.45 -10.37 12.77 5.40 0.07 -10.30 16 14 C -0.23 -4.03 6.09 -104.57 -0.64 -4.66 16 15 C -0.07 -0.99 6.16 -104.92 -0.65 -1.64 16 16 C -0.07 -1.02 9.49 -39.35 -0.37 -1.40 16 17 C -0.14 -1.55 10.03 -39.57 -0.40 -1.94 16 18 C -0.10 -1.04 10.01 -39.57 -0.40 -1.44 16 19 C -0.13 -1.33 10.07 -39.40 -0.40 -1.73 16 20 C 0.09 1.11 7.23 -83.90 -0.61 0.51 16 21 N -0.58 -6.78 6.01 -6.85 -0.04 -6.82 16 22 H 0.42 3.43 8.96 -40.82 -0.37 3.07 16 23 C 0.20 2.92 6.60 -81.74 -0.54 2.38 16 24 C -0.05 -0.77 5.39 -104.99 -0.57 -1.33 16 25 C -0.03 -0.52 7.45 -39.14 -0.29 -0.81 16 26 C -0.12 -1.67 10.03 -39.65 -0.40 -2.07 16 27 C -0.10 -1.22 10.04 -39.48 -0.40 -1.61 16 28 C -0.13 -1.48 10.03 -39.64 -0.40 -1.88 16 29 C -0.10 -1.26 9.79 -39.14 -0.38 -1.64 16 30 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 31 H 0.04 1.18 7.34 -51.93 -0.38 0.79 16 32 H -0.01 -0.14 8.03 -51.93 -0.42 -0.56 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.29 7.43 -51.93 -0.39 0.91 16 35 H 0.08 1.61 7.40 -51.93 -0.38 1.23 16 36 H 0.14 1.86 5.70 -52.49 -0.30 1.56 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.13 2.25 6.75 -52.49 -0.35 1.90 16 41 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -34.69 367.68 -11.15 -45.84 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.48 Total: 2.02 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -6.37 Total: -11.56 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.11 Total: -49.52 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.69 -11.15 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095947876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.323 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds