Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30879 * 126.20078 * 2 1 4 4 C 1.34569 * 107.28719 * 180.24891 * 3 2 1 5 5 C 1.47834 * 126.02306 * 179.73144 * 4 3 2 6 6 O 1.21558 * 119.99837 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99936 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99868 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47249 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47513 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99828 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00596 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99833 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00635 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46715 * 59.99807 * 14 12 10 16 16 H 1.48494 * 109.47443 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46992 * 300.00154 * 14 12 10 18 18 N 1.31566 * 107.95424 * 359.73197 * 4 3 2 19 19 N 1.28862 * 108.70384 * 359.97438 * 18 4 3 20 20 C 1.40156 * 125.76820 * 179.97438 * 19 18 4 21 21 C 1.38856 * 120.05305 * 144.74822 * 20 19 18 22 22 C 1.38106 * 119.94606 * 180.29903 * 21 20 19 23 23 C 1.38401 * 120.05268 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 119.94128 * 180.02562 * 23 22 21 25 25 C 1.38396 * 120.10946 * 0.02562 * 23 22 21 26 26 C 1.38098 * 120.05505 * 0.02562 * 25 23 22 27 27 H 1.08995 * 109.47691 * 270.19749 * 1 2 3 28 28 H 1.09000 * 109.47169 * 30.20809 * 1 2 3 29 29 H 1.09005 * 109.46928 * 150.19978 * 1 2 3 30 30 H 0.97000 * 119.99720 * 359.97438 * 7 5 4 31 31 H 1.08996 * 109.47646 * 300.00423 * 8 7 5 32 32 H 1.09010 * 109.47017 * 60.00371 * 8 7 5 33 33 H 1.08996 * 109.47387 * 300.00882 * 9 8 7 34 34 H 1.09002 * 109.47169 * 60.00254 * 9 8 7 35 35 H 0.97000 * 120.00555 * 179.97438 * 13 12 10 36 36 H 1.07998 * 120.02606 * 0.25103 * 21 20 19 37 37 H 1.07991 * 119.97449 * 179.97438 * 22 21 20 38 38 H 1.07992 * 119.96948 * 179.97438 * 25 23 22 39 39 H 1.08000 * 120.02788 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0561 0.0000 4 6 3.5530 0.6199 -0.0056 5 6 4.7630 1.4692 -0.0132 6 8 5.8652 0.9567 -0.0183 7 7 4.6440 2.8117 -0.0146 8 6 5.8431 3.6533 -0.0217 9 6 5.4319 5.1270 -0.0225 10 6 6.6653 5.9928 -0.0303 11 1 7.6447 5.5374 -0.0348 12 6 6.5437 7.3661 -0.0319 13 7 5.3511 7.9207 -0.0270 14 14 8.0726 8.4393 -0.0409 15 1 8.8740 8.1488 -1.2569 16 1 7.6735 9.8696 -0.0418 17 1 8.8858 8.1526 1.1681 18 7 3.5310 -0.6955 -0.0030 19 7 2.3037 -1.0883 0.0044 20 6 1.8700 -2.4211 0.0087 21 6 0.7255 -2.7777 0.7094 22 6 0.3036 -4.0927 0.7172 23 6 1.0204 -5.0547 0.0271 24 17 0.4872 -6.7067 0.0384 25 6 2.1615 -4.7017 -0.6720 26 6 2.5880 -3.3883 -0.6820 27 1 -0.3634 0.0035 1.0276 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3633 -0.8918 -0.5108 30 1 3.7644 3.2206 -0.0110 31 1 6.4400 3.4428 0.8656 32 1 6.4314 3.4402 -0.9143 33 1 4.8351 5.3373 -0.9100 34 1 4.8434 5.3405 0.8699 35 1 5.2655 8.8869 -0.0277 36 1 0.1660 -2.0274 1.2484 37 1 -0.5862 -4.3706 1.2623 38 1 2.7193 -5.4542 -1.2094 39 1 3.4783 -3.1133 -1.2280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = 71.558078 kcal Electronic energy + Delta-G solvation = -24358.510617 eV Core-core repulsion = 20521.921512 eV Total energy + Delta-G solvation = -3836.589105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.90952 -40.05358 -38.98859 -37.18770 -34.94710 -34.76487 -33.65791 -32.81467 -31.80557 -30.45279 -29.51229 -28.41877 -25.77735 -24.16661 -23.91057 -22.72944 -21.42666 -20.82440 -20.18984 -18.73952 -17.64324 -17.19242 -16.96523 -16.37186 -15.82469 -15.32040 -15.18663 -14.84002 -14.49944 -14.40826 -14.32350 -14.21862 -13.57920 -13.52800 -13.19969 -13.06209 -13.00200 -12.46001 -12.30121 -12.27008 -11.92728 -11.47825 -11.19532 -11.01556 -10.90678 -10.69141 -10.62268 -10.31077 -10.06984 -9.89805 -9.86112 -9.55111 -9.25351 -9.04071 -8.54738 -8.34112 -6.05824 -4.08902 0.00365 0.47590 1.36811 1.41682 1.79210 1.93037 2.79378 3.26114 3.33891 3.37606 3.41602 3.53309 3.74665 3.91547 4.05282 4.19766 4.39337 4.42631 4.49413 4.76428 4.82053 4.94629 4.99834 5.14289 5.17495 5.30972 5.35855 5.42676 5.51582 5.75475 5.84492 6.12780 6.30495 6.34716 6.38058 6.72914 6.84074 7.53394 7.65077 7.70485 7.92181 8.02663 8.29383 8.52979 8.96582 9.55553 11.05657 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.001784 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.612714 B =15689.054733 C =16306.775208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.221 3.779 3 N -0.470 5.470 4 C 0.166 3.834 5 C 0.603 3.397 6 O -0.526 6.526 7 N -0.696 5.696 8 C 0.122 3.878 9 C 0.012 3.988 10 C -0.522 4.522 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.255 5.255 19 N -0.261 5.261 20 C 0.135 3.865 21 C -0.105 4.105 22 C -0.091 4.091 23 C -0.029 4.029 24 Cl -0.058 7.058 25 C -0.091 4.091 26 C -0.083 4.083 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.408 0.592 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.694 -27.884 0.056 33.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.196 5.196 4 C -0.114 4.114 5 C 0.384 3.616 6 O -0.400 6.400 7 N -0.346 5.346 8 C 0.000 4.000 9 C -0.025 4.025 10 C -0.561 4.561 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 N -0.090 5.090 19 N -0.051 5.051 20 C 0.045 3.955 21 C -0.125 4.125 22 C -0.110 4.110 23 C -0.057 4.057 24 Cl -0.028 7.028 25 C -0.111 4.111 26 C -0.103 4.103 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.243 0.757 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.464 -28.152 0.055 32.613 hybrid contribution 0.134 0.612 0.018 0.627 sum -16.331 -27.540 0.073 32.018 Atomic orbital electron populations 1.20528 0.82981 1.05471 1.04604 1.25051 0.97565 0.81572 1.01049 1.71369 1.00478 1.27609 1.20150 1.24147 0.93203 0.88519 1.05552 1.16319 0.84712 0.82254 0.78358 1.90812 1.25257 1.73682 1.50232 1.46101 1.12445 1.04324 1.71773 1.21875 0.84880 0.91984 1.01237 1.19337 0.97833 0.87181 0.98167 1.20999 0.92515 0.91022 1.51562 0.92222 1.24991 0.96146 0.98121 0.95000 1.69951 1.22112 1.10909 1.50204 0.86564 0.83010 0.79137 0.78758 1.20129 1.21271 1.20124 1.74491 1.00335 1.14267 1.19906 1.44452 1.03882 1.06046 1.50736 1.17600 0.96764 0.80339 1.00847 1.21077 0.95874 0.97046 0.98523 1.20929 1.00396 0.90751 0.98923 1.21108 0.96871 0.86675 1.01011 1.98405 1.89710 1.17300 1.97434 1.21030 0.95138 0.96148 0.98740 1.21102 1.00091 0.91372 0.97723 0.88751 0.87786 0.89614 0.75653 0.92037 0.92040 0.95695 0.95696 0.92798 0.83429 0.83340 0.83445 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 8.67 36.00 0.31 -0.13 16 2 C 0.22 2.52 7.79 -155.25 -1.21 1.31 16 3 N -0.47 -7.06 11.09 -8.47 -0.09 -7.15 16 4 C 0.17 2.88 7.96 -156.30 -1.24 1.64 16 5 C 0.60 11.95 7.83 -12.33 -0.10 11.85 16 6 O -0.53 -11.90 17.08 5.31 0.09 -11.81 16 7 N -0.70 -13.51 5.55 -61.25 -0.34 -13.85 16 8 C 0.12 2.67 5.61 -4.04 -0.02 2.65 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C -0.52 -14.60 9.11 -34.45 -0.31 -14.91 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 14 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 N -0.25 -4.10 11.76 32.08 0.38 -3.72 16 19 N -0.26 -3.18 3.47 -7.99 -0.03 -3.20 16 20 C 0.14 1.20 6.22 -83.59 -0.52 0.68 16 21 C -0.10 -0.60 8.26 -39.40 -0.33 -0.93 16 22 C -0.09 -0.43 9.82 -39.57 -0.39 -0.82 16 23 C -0.03 -0.17 6.32 -39.46 -0.25 -0.42 16 24 Cl -0.06 -0.32 28.95 -51.86 -1.50 -1.82 16 25 C -0.09 -0.56 9.82 -39.57 -0.39 -0.95 16 26 C -0.08 -0.67 9.70 -39.40 -0.38 -1.05 16 27 H 0.09 0.35 7.72 -51.93 -0.40 -0.05 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.32 6.89 -51.93 -0.36 -0.04 16 30 H 0.41 7.33 8.18 -40.82 -0.33 7.00 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.15 0.56 6.10 -52.49 -0.32 0.24 16 37 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.15 1.30 8.02 -52.49 -0.42 0.88 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -34.49 359.50 -9.76 -44.25 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.33 Total: 0.24 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -5.07 Total: 0.68 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.65 Total: -53.46 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.49 -9.76 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.810 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds